BCP: Wheat Pathogenomics
| Title | BCP: Wheat Pathogenomics |
|---|---|
| Type | Research cluster |
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An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota
A - Papers appearing in refereed journals
Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778. https://doi.org/10.1111/1462-2920.13038
Host to a stranger: Arabidopsis and Fusarium ear blight
A - Papers appearing in refereed journals
Brewer, H. C. and Hammond-Kosack, K. E. 2015. Host to a stranger: Arabidopsis and Fusarium ear blight. Trends in Plant Science. 20, pp. 651-663. https://doi.org/10.1016/j.tplants.2015.06.011
G-protein alpha-subunit (GPA1) regulates stress, nitrate and phosphate response, flavonoid biosynthesis, fruit/seed development and substantially shares GCR1 regulation in A. thaliana
A - Papers appearing in refereed journals
Chakroborty, N., Sharma, P., Kanyuka, K., Pathak, R. R., Choudhury, D., Hooley, R. and Raghuram, N. 2015. G-protein alpha-subunit (GPA1) regulates stress, nitrate and phosphate response, flavonoid biosynthesis, fruit/seed development and substantially shares GCR1 regulation in A. thaliana. Plant Molecular Biology. 89, pp. 559-576. https://doi.org/10.1007/s11103-015-0374-2
Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence
A - Papers appearing in refereed journals
Urban, M., Irvine, A. G., Cuzick, A. and Hammond-Kosack, K. E. 2015. Using the pathogen-host interactions database (PHI-base) to investigate plant pathogen genomes and genes implicated in virulence. Frontiers in Plant Science. 6, p. 605. https://doi.org/10.3389/fpls.2015.00605
The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum
A - Papers appearing in refereed journals
King, R., Urban, M., Hammond-Kosack, M. C. U., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum. BMC Genomics. 16, p. 544. https://doi.org/10.1186/s12864-015-1756-1
Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence
A - Papers appearing in refereed journals
Derbyshire, M. C., Michaelson, L. V., Parker, J., Kelly, S., Thacker, U., Powers, S. J., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2015. Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence. Fungal Genetics and Biology. 82 (September), pp. 69-84. https://doi.org/10.1016/j.fgb.2015.05.008
Previous bottlenecks and future solutions to dissecting the Zymoseptoria tritici -wheat host-pathogen interaction
A - Papers appearing in refereed journals
Rudd, J. J. 2015. Previous bottlenecks and future solutions to dissecting the Zymoseptoria tritici -wheat host-pathogen interaction. Fungal Genetics and Biology. 79, pp. 24-28. https://doi.org/10.1016/j.fgb.2015.04.005
An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea
A - Papers appearing in refereed journals
Heard, S., Brown, N. A. and Hammond-Kosack, K. E. 2015. An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLOS ONE. 10, p. e0130534. https://doi.org/10.1371/journal.pone.0130534
Unraveling incompatibility between wheat and the fungal pathogen Zymoseptoria tritici through apoplastic proteomics
A - Papers appearing in refereed journals
Yang, F., Li, W., Derbyshire, M., Larsen, M. R., Rudd, J. J. and Palmisano, G. 2015. Unraveling incompatibility between wheat and the fungal pathogen Zymoseptoria tritici through apoplastic proteomics. BMC Genomics. 16, p. 362. https://doi.org/10.1186/s12864-015-1549-6
Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions
A - Papers appearing in refereed journals
Urban, M., King, R., Hassani-Pak, K. and Hammond-Kosack, K. E. 2015. Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions. BMC Genomics. 16, p. 261. https://doi.org/10.1186/s12864-015-1412-9
Virus induced gene silencing (VIGS) for functional anaylsis of wheat genes involved in Zymoseptoria tritici susceptibiblity and resistance
A - Papers appearing in refereed journals
Lee, W-S., Rudd, J. J. and Kanyuka, K. 2015. Virus induced gene silencing (VIGS) for functional anaylsis of wheat genes involved in Zymoseptoria tritici susceptibiblity and resistance. Fungal Genetics and Biology. 79 (June), pp. 84-88. https://doi.org/10.1016/j.fgb.2015.04.006
Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat
A - Papers appearing in refereed journals
Lee, W-S., Devonshire, B. J., Hammond-Kosack, K. E., Rudd, J. J. and Kanyuka, K. 2015. Deregulation of plant cell death through disruption of chloroplast functionality affects asexual sporulation of Zymoseptoria tritici on wheat. Molecular Plant-Microbe Interactions. 28, pp. 590-604. https://doi.org/10.1094/MPMI-10-14-0346-R
In planta transient expression systems for monocots
B - Book chapters etc edited externally
Lee, W-S., Hammond-Kosack, K. E. and Kanyuka, K. 2015. In planta transient expression systems for monocots. in: Davey, M. R., Azhakanandam, K., Daniell, H. and Silverstone, A. (ed.) Recent advancements in gene expression and enabling technologies in crop plants Springer, New York. pp. 391-432
Plant virus particles carrying tumour antigen activate TLR7 and induce high levels of protective antibody
A - Papers appearing in refereed journals
Jobsri, J., Allen, A., Rajagopal, D., Shipton, M., Kanyuka, K., Lomonossoff, G. P., Ottensmeier, C., Diebold, S. S., Stevenson, F. K. and Savelyeva, N. 2015. Plant virus particles carrying tumour antigen activate TLR7 and induce high levels of protective antibody. PLOS ONE. 10, p. e0118096. https://doi.org/10.1371/journal.pone.0118096
Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition
A - Papers appearing in refereed journals
Rudd, J. J., Kanyuka, K., Hassani-Pak, K., Derbyshire, M., Andongabo, A. E., Devonshire, J., Lysenko, A., Saqi, M., Desai, N. M., Powers, S. J., Hooper, J., Ambroso, L., Bharti, A., Farmer, A., Hammond-Kosack, K. E., Dietrich, R. A. and Courbot, M. 2015. Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition. Plant Physiology. 167 (3), pp. 1158-1185. https://doi.org/10.1104/pp.114.255927
Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation
A - Papers appearing in refereed journals
Chakraborty, N., Sharma, P., Kanyuka, K., Pathak, R. R., Choudhury, D., Hooley, R. A. and Raghuram, N. 2015. Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation. PLOS ONE. 10, p. e0117819. https://doi.org/10.1371/journal.pone.0117819
The Pathogen-Host Interactions database (PHI-base): additions and future developments
A - Papers appearing in refereed journals
Urban, M., Pant, R., Raghunath, A., Irvine, A. G., Pedro, H. and Hammond-Kosack, K. E. 2015. The Pathogen-Host Interactions database (PHI-base): additions and future developments. Nucleic Acids Research. 43, pp. D645-D655. https://doi.org/10.1093/nar/gku1165
Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici
A - Papers appearing in refereed journals
Lee, J., Orosa, B., Millyard, L., Edwards, M., Kanyuka, K., Gatehouse, A., Rudd, J. J., Hammond-Kosack, K. E., Pain, N. and Sadanandom, A. 2015. Functional analysis of a wheat homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici. New Phytologist. 206 (2), pp. 598-605. https://doi.org/10.1111/nph.13323
Functional analysis of candidate secreted protein effectors from the wheat pathogen Zymoseptoria tritici
C2 - Non-edited contributions to conferences
Kettles, G. J., Cairns, C., Haynes, K., Kanyuka, K. and Rudd, J. J. 2014. Functional analysis of candidate secreted protein effectors from the wheat pathogen Zymoseptoria tritici. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI), Rhodes, 6-10 July 2014 . pp. P310
Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum
A - Papers appearing in refereed journals
Brewer, H. C., Hammond-Kosack, K. E. and Hawkins, N. D. 2014. Mutations in the Arabidopsis homoserine kinase gene DMR1 confer enhanced resistance to Fusarium culmorum and F. graminearum. BMC Plant Biology. 14, p. 317. https://doi.org/10.1186/s12870-014-0317-0
Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici
C2 - Non-edited contributions to conferences
Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions, Rhodes, 6-10 July 2014 . pp. P703
A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences
C2 - Non-edited contributions to conferences
Kanyuka, K., Lysenko, A., Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, K., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P069
Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction
C2 - Non-edited contributions to conferences
Kanyuka, K., Andongabo, A. E., Hassani-Pak, K., Powers, S. J., Lysenko, A., Saqi, M., Derbyshire, M., Lee, W-S., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction. Abstracts Plant Genomics Congress, London, 12-13 May 2014 .
Rhynchosporium commune avirulence gene discovery: a path to more durable barley resistance
C2 - Non-edited contributions to conferences
Gamble, L., Lynott, J., Berepiki, A., Kanyuka, K., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A. C., Birch, P. R. J. and Avrova, A. 2014. Rhynchosporium commune avirulence gene discovery: a path to more durable barley resistance. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P332
Fine mapping of Stb6, a major resistance gene effective against Zymoseptoria tritici isolate IPO323, in wheat
C2 - Non-edited contributions to conferences
Cambon, F., Lasserre-Zuber, P., Langin, T., Kanyuka, K. and Saintenac, C. 2014. Fine mapping of Stb6, a major resistance gene effective against Zymoseptoria tritici isolate IPO323, in wheat. Abstracts Mycosphaerella Research Community Meeting, Exeter, 11-12 September 2014 .
Rhynchosporium commune effector compliment and their role in pathogenicity on barley
C2 - Non-edited contributions to conferences
Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effector compliment and their role in pathogenicity on barley. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P335
Rhynchosporium commune effectors identification and exploitation
C2 - Non-edited contributions to conferences
Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Looseley, M., Knogge, W., Newton, A., Birch, P., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Rhynchosporium commune effectors identification and exploitation. Abstracts 1st International Workshop on Barley Leaf Diseases, Salsomaggiore Terme, 3-6 June 2014 .
Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley
C2 - Non-edited contributions to conferences
Avrova, A., Gamble, L., Griffe, L., Franco Orozco, B., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Identification of Rhynchosporium commune avirulence genes through genome wide association and their recognition by the host plant barley. Abstracts 10th International Mycological Congress, Bangkok, 3-8 August 2014 .
From Rhynchosporium commune genome sequence to barley resistance
C2 - Non-edited contributions to conferences
Avrova, A., Gamble, L., Griffe, L., Ruiz, O., Munsterkotter, M., Knogge, W., Newton, A., Birch, P. R. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. From Rhynchosporium commune genome sequence to barley resistance. Abstracts Crop Protection in Northern Britain, Dundee, 25-26 February 2014 .
Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species
A - Papers appearing in refereed journals
Mcmillan, V. E., Gutteridge, R. J. and Hammond-Kosack, K. E. 2014. Identifying variation in resistance to the take-all fungus, Gaeumannomyces graminis var. tritici, between different ancestral and modern wheat species. BMC Plant Biology. 14, p. 212. https://doi.org/10.1186/s12870-014-0212-8
Biotechnology: plant protection
B - Book chapters etc edited externally
Hammond-Kosack, K. E. 2014. Biotechnology: plant protection. in: Vanalfen, N. K. (ed.) Encyclopedia of agriculture and food systems, Vol. 2 Elsevier, San Diego. pp. 134-152
The role of chitin signalling in defence against Zymoseptoria tritici in wheat
C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. The role of chitin signalling in defence against Zymoseptoria tritici in wheat. Abstracts Monogram Network Meeting, Reading,27-28 March 2014 .
WGIN Stakeholders' Newsletter [April 2014]
G - Articles in popular magazines and other technical publications
Hammond-Kosack, K. E., Hawkesford, M. J., Mcmillan, V. E., Hammond-Kosack, M., Shepherd, G., Griffiths, S. and Foulkes, J. 2014. WGIN Stakeholders' Newsletter [April 2014]. WGIN Stakeholders' Newsletter. April.
Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici
C2 - Non-edited contributions to conferences
Derbyshire, M., Courbot, M., Hammond-Kosack, K. E., Michaelson, L. V., Parker, J., Thacker, U., Li, N., Bailey, A. and Rudd, J. J. 2014. Functional characterisation of members of the cytochrome B5 reductase gene family in the wheat-infecting fungus Zymoseptoria tritici. Abstracts Meeting on Molecular Biology of Plant Pathogens, Reading, 26-27 March 2014 .
Genetic analyses of BaMMV/BaYMV resistance in barley accession HOR4224 result in the identification of an allele of the translation initiation factor 4e (Hv-eIF4E) exclusively effective against Barley mild mosaic virus (BaMMV)
A - Papers appearing in refereed journals
Perovic, D., Kramer, I., Habekuss, A., Perner, K., Pickering, R., Proeseler, G., Kanyuka, K. and Ordon, F. 2014. Genetic analyses of BaMMV/BaYMV resistance in barley accession HOR4224 result in the identification of an allele of the translation initiation factor 4e (Hv-eIF4E) exclusively effective against Barley mild mosaic virus (BaMMV). Theoretical and Applied Genetics. 127, pp. 1061-1071. https://doi.org/10.1007/s00122-014-2279-x
Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat
A - Papers appearing in refereed journals
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2014. Mycosphaerella graminicola LysM effector-mediated stealth pathogenesis subverts recognition through both CERK1 and CEBiP homologues in wheat. Molecular Plant-Microbe Interactions. 27 (3), pp. 236-243. https://doi.org/10.1094/MPMI-07-13-0201-R
Virus-induced gene silencing as a useful tool for functional genomics in wheat
C2 - Non-edited contributions to conferences
Kanyuka, K. 2014. Virus-induced gene silencing as a useful tool for functional genomics in wheat. International Conference on Translational Cereal Genomics, Vienna, 9-11 February 2014 . pp. 22
New developments in identification and quantification of airborne inoculum
C2 - Non-edited contributions to conferences
West, J. S., Heard, S., Canning, G., Fraaije, B. A. and Hammond-Kosack, K. E. 2013. New developments in identification and quantification of airborne inoculum.
Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions
C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect cereal plant-fungal interactions. Abstracts EMBO Workshop on Green Viruses, from Gene to Landscape, Hyeres-les-Palmiers, 7-11 September 2013 . pp. 79
BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta
C2 - Non-edited contributions to conferences
Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables functional characterisation of small heterologous proteins in planta. Abstracts BBSRC Crop Improvement Research Club 5th Dissemination Event, Edinburgh, 11-12 December 2013 .