SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
Sort by: Date Title
A genomic network to monitor Earth
G - Articles in popular magazines and other technical publications
Davies, N., Field, D. and Hirsch, P. R. 2012. A genomic network to monitor Earth. Nature. 481 (7380), p. 145. https://doi.org/10.1038/481145a
Multi-scale approaches to investigating C dynamics in grassland systems
C2 - Non-edited contributions to conferences
Dungait, J. A. J., Bol, R., Murray, P. J., Dixon, E. R., Granger, S. J., Crotty, F. V., Hirsch, P. R., Evershed, R. and Goulding, K. W. T. 2011. Multi-scale approaches to investigating C dynamics in grassland systems. Abstracts AGU Fall Meeting 2011, San Francisco, 5-9 December 2011 .
Soil metagenomics reveals impacts of land management on microbial communities in long-term field experiments
C2 - Non-edited contributions to conferences
Hirsch, P. R. 2011. Soil metagenomics reveals impacts of land management on microbial communities in long-term field experiments. Abstracts 2011 International Conference on Soil Omics (ICSO), Nanjing, 19-24 November 2011 .
The role of soil bacteria in nitrogen cycling
C2 - Non-edited contributions to conferences
Hirsch, P. R. 2011. The role of soil bacteria in nitrogen cycling. Abstracts SEE11: Joint Meeting of the Royal Entomological Society of London and the Soil Ecology Society, Plymouth, 14-16 September 2011 .
Genetic and management approaches to boost UK wheat yields by ameliorating water deficits
A - Papers appearing in refereed journals
Dodd, I. C., Whalley, W. R., Ober, E. S. and Parry, M. A. J. 2011. Genetic and management approaches to boost UK wheat yields by ameliorating water deficits. Journal of Experimental Botany. 62, pp. 5241-5248. https://doi.org/10.1093/jxb/err242
Conservation of targeting but divergence in function and quality control of peroxisomal ABC transporters: an analysis using cross-kingdom expression
A - Papers appearing in refereed journals
Zhang, X., De Marcos Lousa, C., Schutte-Lensink, N., Ofman, R., Wanders, R. J., Baldwin, S. A., Baker, A., Kemp, S. and Theodoulou, F. L. 2011. Conservation of targeting but divergence in function and quality control of peroxisomal ABC transporters: an analysis using cross-kingdom expression. Biochemical Journal. 436, pp. 547-557. https://doi.org/10.1042/BJ20110249
A model to predict the effects of soil structure on denitrification and N2O emission
A - Papers appearing in refereed journals
Laudone, G. M., Matthews, G. P., Bird, N. R. A., Whalley, W. R., Cardenas, L. M. and Gregory, A. S. 2011. A model to predict the effects of soil structure on denitrification and N2O emission. Journal of Hydrology. 409, pp. 283-290. https://doi.org/10.1016/j.jhydrol.2011.08.026
Exploiting genomics to understand the interactions between root-knot nematodes and Pasteuria penetrans
B - Book chapters etc edited externally
Schaff, J. E., Mauchline, T. H. and Opperman, C. H. 2011. Exploiting genomics to understand the interactions between root-knot nematodes and Pasteuria penetrans. in: Davies, K. G. and Spiegel, Y. (ed.) Biological control of plant-parasitic nematodes: building coherence between microbial ecology and molecular mechanisms Springer, Dordrecht. pp. 91-113
Identification of new single nucleotide polymorphism-based markers for inter- and intraspecies discrimination of obligate bacterial parasites (Pasteuria spp.) of invertebrates
A - Papers appearing in refereed journals
Mauchline, T. H., Knox, R., Mohan, S., Powers, S. J., Kerry, B. R., Davies, K. G. and Hirsch, P. R. 2011. Identification of new single nucleotide polymorphism-based markers for inter- and intraspecies discrimination of obligate bacterial parasites (Pasteuria spp.) of invertebrates. Applied and Environmental Microbiology. 77, pp. 6388-6394. https://doi.org/10.1128/AEM.05185-11
Ecology of Pochonia chlamydosporia in the rhizosphere at the population, whole organism and molecular scales
B - Book chapters etc edited externally
Kerry, B. R. and Hirsch, P. R. 2011. Ecology of Pochonia chlamydosporia in the rhizosphere at the population, whole organism and molecular scales. in: Davies, K. G. and Spiegel, Y. (ed.) Biological control of plant-parasitic nematodes: building coherence between microbial ecology and molecular mechanisms Springer, Dordrecht. pp. 171-182
The velocity of shear waves in saturated soil
A - Papers appearing in refereed journals
Whalley, W. R., Jenkins, M. and Attenborough, K. 2011. The velocity of shear waves in saturated soil. Soil Science Society of America Journal. 75, pp. 1652-1657. https://doi.org/10.2136/sssaj2010.0449
Metagenomic comparison of direct and indirect soil DNA extraction approaches
A - Papers appearing in refereed journals
Delmont, T. O., Robe, P., Clark, I. M., Simonet, P. and Vogel, T. M. 2011. Metagenomic comparison of direct and indirect soil DNA extraction approaches. Journal of Microbiological Methods. 86 (3), pp. 397-400. https://doi.org/10.1016/j.mimet.2011.06.013
Water supply and not nitrate concentration determines primary root growth in Arabidopsis
A - Papers appearing in refereed journals
Chapman, N., Whalley, W. R., Lindsey, K. and Miller, A. J. 2011. Water supply and not nitrate concentration determines primary root growth in Arabidopsis. Plant, Cell and Environment. 34 (10), pp. 1630-1638. https://doi.org/10.1111/j.1365-3040.2011.02358.x
Drought stress, effect on soil mechanical impedance and root (crop) growth
G - Articles in popular magazines and other technical publications
Whalley, W. R. and Clark, L. J. 2011. Drought stress, effect on soil mechanical impedance and root (crop) growth.
Crop emergence, the impact of mechanical impedance
B - Book chapters etc edited externally
Whalley, W. R. and Finch-Savage, W. E. 2011. Crop emergence, the impact of mechanical impedance. in: Glinski, J., Lipiec, J. and Horabik, J. (ed.) Encyclopedia of agrophysics Springer, Dordrecht. pp. 163-167
Discrimination of Australian soil horizons and classes from their visible-near infrared spectra
A - Papers appearing in refereed journals
Viscarra Rossel, R. A. and Webster, R. 2011. Discrimination of Australian soil horizons and classes from their visible-near infrared spectra. European Journal of Soil Science. 62 (4), pp. 637-647. https://doi.org/10.1111/j.1365-2389.2011.01356.x
Pochonia chlamydosporia: advances and challenges to improve its performance as a biological control agent of sedentary endo-parasitic nematodes
C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Esteves, I., Finetti-Sialer, M., Hirsch, P. R., Ward, E., Devonshire, J., Hidalgo, L. and Kerry, B. R. 2011. Pochonia chlamydosporia: advances and challenges to improve its performance as a biological control agent of sedentary endo-parasitic nematodes. Abstracts 50th Annual Meeting of the Society of Nematologists, Corvallis, 17-20 July 2011 . pp. 105-106
Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control
C1 - Edited contributions to conferences/learned societies
Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2011. Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control.
Transcriptome analysis shows differential gene expression in the saprotrophic to parasitic transition of Pochonia chlamydosporia
A - Papers appearing in refereed journals
Rosso, L. C., Finetti-Sialer, M. M., Hirsch, P. R., Ciancio, A., Kerry, B. R. and Clark, I. M. 2011. Transcriptome analysis shows differential gene expression in the saprotrophic to parasitic transition of Pochonia chlamydosporia. Applied Microbiology and Biotechnology. 90, pp. 1981-1994. https://doi.org/10.1007/s00253-011-3282-7
Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil
A - Papers appearing in refereed journals
Macdonald, C. A., Clark, I. M., Hirsch, P. R., Zhao, F-J. and McGrath, S. P. 2011. Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil. Applied and Environmental Microbiology. 77, pp. 4626-4633. https://doi.org/10.1128/AEM.02232-10
Impacts of land use change on denitrifying bacteria and nitrous oxide emissions
C2 - Non-edited contributions to conferences
Hirsch, P. R., Jhurreea, D., Scott, T., Misselbrook, T. H., Goulding, K. W. T. and Clark, I. M. 2011. Impacts of land use change on denitrifying bacteria and nitrous oxide emissions. Abstracts Theo Murphy Scientific Meeting: Nitrous Oxide, the Forgotten Greenhouse Gas, Chicheley, 23-24 May 2011 .
Nutrient regulation of parasitism genes in the nematophagous fungus Pochonia chlamydosporia
C2 - Non-edited contributions to conferences
Ward, E., Kerry, B. R., Manzanilla-Lopez, R. H. and Hirsch, P. R. 2011. Nutrient regulation of parasitism genes in the nematophagous fungus Pochonia chlamydosporia. Abstracts 26th Fungal Genetics Conference, Asilomar, 15-20 March 2011 . pp. 237
Effect of soil saturation on denitrification in a grassland soil
C2 - Non-edited contributions to conferences
Cardenas, L. M., Butler, M., Gregory, A. S., Matthews, G. P., Whalley, W. R., Bird, N. R. A., Misselbrook, T. H., Laudone, G. M. and Scholefield, D. 2011. Effect of soil saturation on denitrification in a grassland soil. Abstracts Conference on Nitrogen and Global Change: Key Findings - Future Challenges, Edinburgh, 11-15 April 2011 .
Ginninderra revisited: the contribution of B. E. Butler to statistical pedology
A - Papers appearing in refereed journals
Webster, R. 2011. Ginninderra revisited: the contribution of B. E. Butler to statistical pedology. Soil Research. 49, pp. 203-211. https://doi.org/10.1071/SR10174
Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils
A - Papers appearing in refereed journals
Macdonald, C. A., Clark, I. M., Zhao, F-J., Hirsch, P. R., Singh, B. K. and McGrath, S. P. 2011. Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils. Soil Biology and Biochemistry. 43, pp. 932-941. https://doi.org/10.1016/j.soilbio.2011.01.004
Accessing the soil metagenome for studies of microbial diversity
A - Papers appearing in refereed journals
Delmont, T. O., Robe, P., Cecillon, S., Clark, I. M., Constancias, F., Simonet, P., Hirsch, P. R. and Vogel, T. M. 2011. Accessing the soil metagenome for studies of microbial diversity. Applied and Environmental Microbiology. 77 (4), pp. 1315-1324. https://doi.org/10.1128/AEM.01526-10
Soil engineering in vivo: harnessing natural biogeochemical systems for sustainable, multi-functional engineering solutions
A - Papers appearing in refereed journals
Dejong, J. T., Soga, K., Banwart, S. A., Whalley, W. R., Ginn, T. R., Nelson, D. C., Mortensen, B. M., Martinez, B. C. and Barkouki, T. 2011. Soil engineering in vivo: harnessing natural biogeochemical systems for sustainable, multi-functional engineering solutions. Journal of the Royal Society Interface. 8, pp. 1-15. https://doi.org/10.1098/rsif.2010.0270
Soil management in relation to sustainable agriculture and ecosystem services
A - Papers appearing in refereed journals
Powlson, D. S., Gregory, P. J., Whalley, W. R., Quinton, J. N., Hopkins, D. W., Whitmore, A. P., Hirsch, P. R. and Goulding, K. W. T. 2011. Soil management in relation to sustainable agriculture and ecosystem services. Food Policy. 36, pp. S72-S87. https://doi.org/10.1016/j.foodpol.2010.11.025
Estimating soil strength in the rooting zone of wheat
A - Papers appearing in refereed journals
Whitmore, A. P., Whalley, W. R., Bird, N. R. A., Watts, C. W. and Gregory, A. S. 2011. Estimating soil strength in the rooting zone of wheat. Plant and Soil. 339, pp. 363-375. https://doi.org/10.1007/s11104-010-0588-7
Landscape-scale controls on the spatial distribution of caesium 137: a study based on an airborne geophysical survey across Northern Ireland
A - Papers appearing in refereed journals
Rawlins, B. G., Scheib, C., Beamish, D., Webster, R., Tyler, A. N. and Young, M. E. 2011. Landscape-scale controls on the spatial distribution of caesium 137: a study based on an airborne geophysical survey across Northern Ireland. Earth Surface Processes And Landforms. 36 (2), pp. 158-169. https://doi.org/10.1002/esp.2026
Peroxisomal transport systems: roles in signaling and metabolism
B - Book chapters etc edited externally
Theodoulou, F. L., Zhang, X., De Marcos Lousa, C., Nyathi, Y. and Baker, A. 2011. Peroxisomal transport systems: roles in signaling and metabolism. in: Geisler, M. and Venema, K. (ed.) Transporters and pumps in plant signaling Springer, Berlin. pp. 327-351
Soil without plants: the consequences for microorganisms and mesofauna
C1 - Edited contributions to conferences/learned societies
Goulding, K. W. T., Murray, P. J., Sohi, S. P., Gilliam, L. M., Williams, J. K., Clark, I. M. and Hirsch, P. R. 2010. Soil without plants: the consequences for microorganisms and mesofauna. Gilkes, R. and Prakongkep, N. (ed.) Proceedings 19th World Congress of Soil Science, Brisbane, 1-6 August 2010 . Australian Society of Soil Science, Warragul. pp. 1622-1625
Mapping the three-dimensional variation of electrical conductivity in a paddy rice soil
C2 - Non-edited contributions to conferences
Li, H. Y., Shi, Z., Webster, R. and Guo, Y. 2010. Mapping the three-dimensional variation of electrical conductivity in a paddy rice soil. Abstracts 19th World Congress of Soil Science: Soil Solutions for a Changing World, Brisbane, 1-6 August 2010 . pp. 95-98
Pasteuria from Heterodera cajani reveals evidence that spore germination is a specificity determinant
C2 - Non-edited contributions to conferences
Mohan, S., Rowe, J., Mauchline, T. H., Davies, K. G., Kerry, B. R. and Gaur, H. S. 2010. Pasteuria from Heterodera cajani reveals evidence that spore germination is a specificity determinant. Abstracts 30th International Symposium of the European Society of Nematologists, Vienna, 19-23 September 2010 .
Pasteuria from Heterodera cajani exhibits altered spore orientation of attachment, germination and infection of Globodera pallida
C2 - Non-edited contributions to conferences
Mohan, S., Rowe, J., Mauchline, T. H., Davies, K. G., Kerry, B. R. and Gaur, H. S. 2010. Pasteuria from Heterodera cajani exhibits altered spore orientation of attachment, germination and infection of Globodera pallida. Abstracts 30th International Symposium of the European Society of Nematologists, Vienna, 19-23 September 2010 .
Nutrient regulation of parasitism in Pochonia chlamydosporia
C2 - Non-edited contributions to conferences
Ward, E., Mutua, G., Manzanilla-Lopez, R. H., Kerry, B. R., Kimenju, J. and Hirsch, P. R. 2010. Nutrient regulation of parasitism in Pochonia chlamydosporia. Abstracts ONTA 42nd Annual Meeting, Quito, Ecuador, 3-8 October 2010 . pp. 40
Exploring microbial diversity - methods and meaning
B - Book chapters etc edited externally
Ogilvie, L. A. and Hirsch, P. R. 2010. Exploring microbial diversity - methods and meaning. in: Tepper, G. H. (ed.) Species diversity and extinction Nova Science Publishers, Hauppauge. pp. 24pp
Pochonia chlamydosporia: some biological and physiological aspects in the host-parasite relationship
C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Kerry, B. R., Esteves, I., Ward, E. and Hirsch, P. R. 2010. Pochonia chlamydosporia: some biological and physiological aspects in the host-parasite relationship. Abstracts ONTA 42nd Annual Meeting, Quito, Ecuador, 3-8 October 2010 . pp. 10
Separating the effects of water and nitrate stress on root system architecture
C2 - Non-edited contributions to conferences
Chapman, N., Whalley, W. R., Miller, A. J. and Lindsey, K. 2010. Separating the effects of water and nitrate stress on root system architecture. Abstracts 15th International Workshop on Plant Membrane Biology, Adelaide, 19-24 September 2010 . pp. 61
Effects of long-term fertilization and liming on microbial functions and diversity in the grassland site at Rothamsted Research, UK
C2 - Non-edited contributions to conferences
Wu, Liyou, Liang, Y., Clark, I. M., Wue, K., Deng, Y., He, Z., Van Nostrand, J., Macdonald, C., Hirsch, P. R., McGrath, S. P. and Zhou, J. 2010. Effects of long-term fertilization and liming on microbial functions and diversity in the grassland site at Rothamsted Research, UK. Abstracts 13th International Symposium on Microbial Ecology, Seattle, 22-27 August 2010 .