SAS-H: Soil Biology

Title	SAS-H: Soil Biology
Type	Research cluster

Outputs

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Unbalanced analysis of variance

B - Book chapters etc edited externally

Webster, R. 2023. Unbalanced analysis of variance. in: Daya Sagar, B. S, Cheng, Q., McKinley, J. and Agterberg, F. (ed.) Encyclopedia of Mathematical Geosciences Springer. pp. 1579-1583

A loss function to evaluate agricultural decision‑making under uncertainty: a case study of soil spectroscopy

A - Papers appearing in refereed journals

Breure, T., Haefele, S. M., Hannam, J. A., Corstanje, R., Webster, R., Moreno-Rojas, S. and Milne, A. E. 2022. A loss function to evaluate agricultural decision‑making under uncertainty: a case study of soil spectroscopy. Precision Agriculture. 23, pp. 1333 - 1353. https://doi.org/10.1007/s11119-022-09887-2

Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses

A - Papers appearing in refereed journals

Sokolidi, A., Webster, R., Milne, A. E., Clark, S. J., Clarkson, J., Bielik M., Morley, P. and West, J. S. 2022. Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses. Phytopathology. 112 (11), pp. 49-49.

Spatial characteristics of the fungus powdery mildew (Erysiphe neolycopersici) on tomatoes and its spread in industrial greenhouses

A - Papers appearing in refereed journals

Sokolidi, A., Webster, R., Milne, A. E., Bielik, M., Morley, P., Clarkson, J. P. and West, J. S. 2022. Spatial characteristics of the fungus powdery mildew (Erysiphe neolycopersici) on tomatoes and its spread in industrial greenhouses. Biostatistics. 1 (1), pp. 18-30.

Improving the shear design of steel-bar reinforced ultra high performance fibre reinforced concrete beams using mesoscale modelling

A - Papers appearing in refereed journals

Zhang, Y, Yang, Z, Zhang, H., Tsang, N. and Zhang, X. 2022. Improving the shear design of steel-bar reinforced ultra high performance fibre reinforced concrete beams using mesoscale modelling. Advances in structural engineering. 24 (4). https://doi.org/10.1177/13694332221137174

A hydro-mechanical-damage fully coupled cohesive phase field model for complicated fracking simulations in poroelastic media

A - Papers appearing in refereed journals

Lia, H., Lei, H., Yang, Z., Wu, J., Zhang, X. and Li, S. 2022. A hydro-mechanical-damage fully coupled cohesive phase field model for complicated fracking simulations in poroelastic media. Computer Methods in Applied Mechanics and Engineering. 399, p. 115451. https://doi.org/10.1016/j.cma.2022.115451

Causal Modeling of Soil Processes for Improved Generalization

Conference paper

Neal, A. L., Sharma, S., Crawford, J. W., Kiciman, E., Malvar, S., Rodriguez, E. and Chandra, R. 2022. Causal Modeling of Soil Processes for Improved Generalization. NeurIPS 2022. New Orleans Conference Center 28 Nov 2022

Abundance and phylogenetic distribution of eight key enzymes of the phosphorus biogeochemical cycle in grassland soils.

A - Papers appearing in refereed journals

Garaycochea, S., Altier, N., Leoni, C., Neal, A. L. and Romero, H. 2022. Abundance and phylogenetic distribution of eight key enzymes of the phosphorus biogeochemical cycle in grassland soils. Environmental Microbiology. https://doi.org/10.1111/1758-2229.13159

Assessing pre-pandemic carbon footprint of diet transitions in UK nations and regions

A - Papers appearing in refereed journals

Ali, M., Koh, L., Liu, L., Zhang, J., Roberts, W., Robins, D. and Cooper, D. 2022. Assessing pre-pandemic carbon footprint of diet transitions in UK nations and regions. International Journal of Production Research. 61 (18), pp. 6115-6130. https://doi.org/10.1080/00207543.2022.2104182

Statistics in soil science

A - Papers appearing in refereed journals

Webster, R. 2022. Statistics in soil science. Reference module in earth systems and environmental sciences. https://doi.org/10.1016/B978-0-12-822974-3.00002-1

Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses

Conference poster

Different Responses in Root Water Uptake of Summer Maize to Planting Density and Nitrogen Fertilization

A - Papers appearing in refereed journals

Gao, Y., Chen, J., Wang, G., Liu, Z., Sun, W., Zhang, Y. and Zhang, X. 2022. Different Responses in Root Water Uptake of Summer Maize to Planting Density and Nitrogen Fertilization. Frontiers in Plant Science. 13, p. 918043. https://doi.org/10.3389/fpls.2022.918043

An overlooked mechanism underlying the attenuated temperature response of soil heterotrophic respiration

A - Papers appearing in refereed journals

Zhang, X., Whalley, P. A., Gregory, A. S., Whalley, W. R., Coleman, K., Neal, A. L., Mooney, S. J., Soga, K. and Illangasekare, T. H. 2022. An overlooked mechanism underlying the attenuated temperature response of soil heterotrophic respiration. Journal of the Royal Society Interface. 19 (192), p. 20220276. https://doi.org/10.1098/rsif.2022.0276

Diffuse reflectance spectroscopy for estimating soil properties: A technology for the 21st century

A - Papers appearing in refereed journals

Rossel, R. A. V., Behrens, T., Ben-Dor, E., Chabrillat, S., Dematte, J. A. M., Ge, Y., Gomez, C., Guerrero, C., Peng, Y., Ramirez-Lopez, L., Shi, Z., Stenberg, B., Webster, R., Winowiecki, L. and Shen, Z. 2022. Diffuse reflectance spectroscopy for estimating soil properties: A technology for the 21st century. European Journal of Soil Science. 73 (4), p. e13271. https://doi.org/10.1111/ejss.13271

Identification of novel aphid-killing bacteria to protect plants.

A - Papers appearing in refereed journals

Paliwal, D., Hamilton, A. J., Barrett, G. A., Alberti, F., Emden, H. V., Monteil, C. L., Mauchline, T. H., Nauen, R., Wagstaff, C., Bass, C. G. and Jackson, R. W. 2022. Identification of novel aphid-killing bacteria to protect plants. Microbial Biotechnology. 15 (4), pp. 1203-1220. https://doi.org/10.1111/1751-7915.13902

Spatial statistics and soil mapping: A blossoming partnership under pressure

A - Papers appearing in refereed journals

Heuvelink, G. B. M. and Webster, R. 2022. Spatial statistics and soil mapping: A blossoming partnership under pressure. Spatial Statistics. 50, p. 100639. https://doi.org/10.1016/j.spasta.2022.100639

Changes of soil structure under different tillage management assessed by bulk density, penetrometer resistance, water retention curve, least limiting water range and X-ray computed tomography

A - Papers appearing in refereed journals

Tian, M., Qin, S., Whalley, W. R., Zhou, H., Ren, T. and Gao, W. 2022. Changes of soil structure under different tillage management assessed by bulk density, penetrometer resistance, water retention curve, least limiting water range and X-ray computed tomography. Soil & Tillage Research. 221, p. 105420. https://doi.org/10.1016/j.still.2022.105420

Complementary protein extraction methods increase the identification of the Park Grass Experiment metaproteome

A - Papers appearing in refereed journals

Quinn, G. A., Abdelhameed, A., Banat, I. M., Berra, D., Doerr,S. H., Dudley, E., Francis, L. W., Gazze, S. A., Hallin, I., Matthews, G. P., Swain, M. T., Whalley, W. R. and Van Keulena, G. 2022. Complementary protein extraction methods increase the identification of the Park Grass Experiment metaproteome. Applied Soil Ecology. 173, p. 104388. https://doi.org/10.1016/j.apsoil.2022.104388

The impact of drought length and intensity on N cycling gene abundance, transcription and the size of an N2O hot moment from a temperate grassland soil

A - Papers appearing in refereed journals

Barrat, H., Clark, I. M., Evans, J., Chadwick, D. R. and Cardenas, L. M. 2022. The impact of drought length and intensity on N cycling gene abundance, transcription and the size of an N2O hot moment from a temperate grassland soil. Soil Biology and Biochemistry. 168 (May), p. 108606. https://doi.org/10.1016/j.soilbio.2022.108606

A nation that rebuilds its soils rebuilds itself- an engineer’s perspective

A - Papers appearing in refereed journals

Johnson, K. L., Gray, N. D., Stone, W., Kelly, B. F. J., Fitzsimons, M., Clarke, C., Blake, L., Chivasa, S., Mtambanengwe, F., Mapfumo, P., Baker, A., Beckmann, S., Dominelli, L., Neal, A. L. and Gwandu, T. 2022. A nation that rebuilds its soils rebuilds itself- an engineer’s perspective. Soil Security. 7, p. 100060. https://doi.org/10.1016/j.soisec.2022.100060

Distribution of heavy metals polluting the soil near an abandoned mine in Northwestern Mexico

A - Papers appearing in refereed journals

Gonzalez-Mendez, B., Webster, R., Loredo-Portales, R., Molina-Freaner, F. and Djellouli, R. 2022. Distribution of heavy metals polluting the soil near an abandoned mine in Northwestern Mexico. Environmental Earth Sciences. 81 (6), p. 176. https://doi.org/10.1007/s12665-022-10285-0

Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat

A - Papers appearing in refereed journals

Oszvald, M., Hassall, K. L., Hughes, D. J., Torres-Ballesteros, A., Clark, I. M., Riche, A. B. and Heuer, S. 2022. Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat. Frontiers in Plant Science. 13, p. 816475. https://doi.org/10.3389/fpls.2022.816475

The cost-effectiveness of reflectance spectroscopy for estimating soil organic carbon

A - Papers appearing in refereed journals

Li, S., Viscarra Rossel, R. A. and Webster, R. 2022. The cost-effectiveness of reflectance spectroscopy for estimating soil organic carbon. European Journal of Soil Science. 73 (1), p. e13202. https://doi.org/10.1111/ejss.13202

N2O hot moments were not driven by changes in nitrogen and carbon substrates or changes in N cycling functional genes

A - Papers appearing in refereed journals

Barrat, H., Charteris, A., Le Cocq, K., Abadie, M., Clark, I. M., Chadwick, D. R. and Cardenas, L. M. 2022. N2O hot moments were not driven by changes in nitrogen and carbon substrates or changes in N cycling functional genes. European Journal of Soil Science. 73 (1), p. e13190. https://doi.org/10.1111/ejss.13190

Localized nutrient supply can facilitate root proliferation and increase nitrogen-use efficiency in compacted soil

A - Papers appearing in refereed journals

Wu, X., Li, H., Rengel, Z., Whalley, W. R., Li, H., Zhang, F., Shen, J. and Jin, K. 2022. Localized nutrient supply can facilitate root proliferation and increase nitrogen-use efficiency in compacted soil. Soil & Tillage Research. 215 (January), p. 105198. https://doi.org/10.1016/j.still.2021.105198

Reduction effect of individual N, P, K fertilization on antibiotic resistance genes in reclaimed water irrigated soil

A - Papers appearing in refereed journals

Cui, E., Fan, X., Hu, C., Neal, A. L., Cui, B., Liu, C. and Gao, F. 2022. Reduction effect of individual N, P, K fertilization on antibiotic resistance genes in reclaimed water irrigated soil . Ecotoxicology and Environmental Safety. 231, p. 113185. https://doi.org/10.1016/j.ecoenv.2022.113185

Cropping system exerts stronger influence on antibiotic resistance gene assemblages in greenhouse soils than reclaimed wastewater irrigation

A - Papers appearing in refereed journals

Liu, Y., Neal, A. L., Zhang, X., Fan, H., Liu, H. and Li, Z. 2022. Cropping system exerts stronger influence on antibiotic resistance gene assemblages in greenhouse soils than reclaimed wastewater irrigation . Journal Of Hazardous Materials. 425, p. 128046. https://doi.org/10.1016/j.jhazmat.2021.128046

The molecular size continuum of soil organic phosphorus and its chemical associations

A - Papers appearing in refereed journals

Reusser, J. E., Tamburini, F., Neal, A. L., Verel, R., Frossard, E. and McLaren, T. I. 2022. The molecular size continuum of soil organic phosphorus and its chemical associations . Geoderma. 412, p. 115716. https://doi.org/10.1016/j.geoderma.2022.115716

Evolution of the transport properties of soil aggregates and their relationship with soil organic carbon following land use changes

A - Papers appearing in refereed journals

Wang, F., Zhang, X., Neal, A. L., Crawford, J. W., Mooney, S. and Bacq-Lebreuil, A. 2022. Evolution of the transport properties of soil aggregates and their relationship with soil organic carbon following land use changes. Soil & Tillage Research. 215, p. 105226. https://doi.org/10.1016/j.still.2021.105226

Influence of organic matter on soil properties: by how much can organic carbon be increased in arable soils and can changes be measured?

A - Papers appearing in refereed journals

Powlson, D. S. and Neal, A. L. 2021. Influence of organic matter on soil properties: by how much can organic carbon be increased in arable soils and can changes be measured? Proceedings of the International Fertiliser Society. 862, pp. 1-32.

Geostatistics : Modelling spatial variation

B - Book chapters etc edited externally

Webster, R. 2021. Geostatistics : Modelling spatial variation. in: Encyclopedia of Soils in the Environment Elsevier.

On the improved Brutsaert's model to estimate the soil water content by measuring P-wave and S-wave speeds: A commentary on Xu et al. (2020)

A - Papers appearing in refereed journals

Shin, H. C. and Whalley, W. R. 2021. On the improved Brutsaert's model to estimate the soil water content by measuring P-wave and S-wave speeds: A commentary on Xu et al. (2020). Geoderma. 402 (15 November), p. 115335. https://doi.org/10.1016/j.geoderma.2021.115335

Land management legacy affects abundance and function of the acdS gene in wheat root associated pseudomonads

A - Papers appearing in refereed journals

Ruscoe, H., Taketani, R., Clark, I. M., Lund, G., Hughes, D. J., Dodd, I., Hirsch, P. R. and Mauchline, T. H. 2021. Land management legacy affects abundance and function of the acdS gene in wheat root associated pseudomonads. Frontiers in Microbiology. 12, p. 611339. https://doi.org/10.3389/fmicb.2021.611339

Theory of microbial coexistence in promoting soil–plant ecosystem health

A - Papers appearing in refereed journals

Zhang, N., Nunan, N., Hirsch, P. R., Sun, B., Zhou, J. and Liang, Y. 2021. Theory of microbial coexistence in promoting soil–plant ecosystem health. Biology And Fertility Of Soils. 57, p. 897–911. https://doi.org/10.1007/s00374-021-01586-w

Comparison of soil tortuosity calculated by different methods

A - Papers appearing in refereed journals

Zhang, Y., Yang, Z., Wang, F. and Zhang, X. 2021. Comparison of soil tortuosity calculated by different methods. Geoderma. 402, p. 115358. https://doi.org/10.1016/j.geoderma.2021.115358

Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils

A - Papers appearing in refereed journals

Clark, I. M., Hughes, D. J., Fu, Q., Abadie, M. and Hirsch, P. R. 2021. Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils . Scientific Reports. 11, p. 15905. https://doi.org/10.1038/s41598-021-95100-9

Editorial to the Thematic Topic Towards a more sustainable agriculture through managing soil microbiomes

A - Papers appearing in refereed journals

Babin, D., Leoni, C., Neal, A. L., Sessitsch, A. and Smalla, K. 2021. Editorial to the Thematic Topic Towards a more sustainable agriculture through managing soil microbiomes. FEMS Microbiology Ecology. 97 (8), p. fiab094. https://doi.org/10.1093/femsec/fiab094

Enterotype-like microbiome stratification as emergent structure in complex adaptive systems: A mathematical model

A - Papers appearing in refereed journals

Martin, M. A., Crawford, J. W., Neal, A. L. and Garcia-Gutierrez-Baez, C. 2021. Enterotype-like microbiome stratification as emergent structure in complex adaptive systems: A mathematical model. Fractals: Complex Geometry, Patterns, and Scaling in Nature and Society. https://doi.org/10.1142/S0218348X21502108

Relative contributions of bacteria and fungi to nitrous oxide emissions following nitrate application in soils representing different land uses

A - Papers appearing in refereed journals

Castellano-Hinojosa, A., Le Cocq, K., Charteris, A., Abadie, M., Chadwick, D. R., Clark, I. M., Bedmar, E. J. and Cardenas, L. M. 2021. Relative contributions of bacteria and fungi to nitrous oxide emissions following nitrate application in soils representing different land uses. International Biodeterioration & Biodegradation. 159, p. 105199. https://doi.org/10.1016/j.ibiod.2021.105199

Determination of wheat spike and spikelet architecture and grain traits using X-ray Computed Tomography imaging

A - Papers appearing in refereed journals

Zhou, H., Riche, A. B., Hawkesford, M. J., Whalley, W. R., Atkinson, B. S., Sturrock, C. J. and Mooney, S. J. 2021. Determination of wheat spike and spikelet architecture and grain traits using X-ray Computed Tomography imaging. Plant Methods. 17 (article), p. 26. https://doi.org/10.1186/s13007-021-00726-5