SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
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Soil as an Extended Composite Phenotype of the Microbial Metagenome
A - Papers appearing in refereed journals
Neal, A. L., Bacq-Labreuil, A., Zhang, X., Clark, I. M., Coleman, K., Mooney, S. J., Ritz, K. and Crawford, J. W. 2020. Soil as an Extended Composite Phenotype of the Microbial Metagenome. Scientific Reports. 10, p. 10649. https://doi.org/10.1038/s41598-020-67631-0
A novel approach to estimate soil penetrometer resistance from water content, bulk density, and shear wave velocity: A laboratory study on a loamy sand soil
A - Papers appearing in refereed journals
Zhang, W., Gao, W., Ren, T. and Whalley, W. R. 2020. A novel approach to estimate soil penetrometer resistance from water content, bulk density, and shear wave velocity: A laboratory study on a loamy sand soil. Geoderma. 368 (1 June), p. 114276. https://doi.org/10.1016/j.geoderma.2020.114276
Frost damage to maize in northeast India: assessment and estimated loss of yield by hyperspectral proximal remote sensing
A - Papers appearing in refereed journals
Choudhury, B. U., Webster, R., Sharma, V., Goswami, J., Meetei, T. T., Krishnappa, R. and Raju, P. L. N. 2019. Frost damage to maize in northeast India: assessment and estimated loss of yield by hyperspectral proximal remote sensing. Journal of Applied Remote Sensing. 13 (4), p. 044527. https://doi.org/10.1117/1.JRS.13.044527
The pH optimum of soil exoenzymes adapt to long term changes in soil pH
A - Papers appearing in refereed journals
Puissant, J., Briony, J., Goodall, T., Mang, D., Blaud, A., Gweon, H. S., Malik, A., Jones, D. L., Clark, I. M., Hirsch, P. R. and Griffiths, R. 2019. The pH optimum of soil exoenzymes adapt to long term changes in soil pH. Soil Biology and Biochemistry. 138, p. 107601. https://doi.org/10.1016/j.soilbio.2019.107601
Effects of urease and nitrification inhibitors on soil N, nitrifier abundance and activity in a sandy loam soil
A - Papers appearing in refereed journals
Fu, Q., Abadie, M., Blaud, A., Carswell, A. M., Misselbrook, T. H., Clark, I. M. and Hirsch, P. R. 2019. Effects of urease and nitrification inhibitors on soil N, nitrifier abundance and activity in a sandy loam soil . Biology And Fertility Of Soils. pp. 1-10. https://doi.org/10.1007/s00374-019-01411-5
Soil strength influences wheat root interactions with soil macropores
A - Papers appearing in refereed journals
Atkinson, J. A., Hawkesford, M. J., Whalley, W. R., Zhou, H. and Money, S. J. 2019. Soil strength influences wheat root interactions with soil macropores. Plant, Cell and Environment. pp. 1-11. https://doi.org/10.1111/pce.13659
Development of a reproducible method of analysis of iron, zinc and phosphorus in vegetables digests by SEC-ICP-MS
A - Papers appearing in refereed journals
Dellaquila, C., Neal, A. L. and Shewry, P. R. 2019. Development of a reproducible method of analysis of iron, zinc and phosphorus in vegetables digests by SEC-ICP-MS . Food Chemistry. 308 (2020), p. 125652. https://doi.org/10.1016/j.foodchem.2019.125652
Land management and microbial seed load effect on rhizosphere and endosphere bacterial community assembly in wheat
A - Papers appearing in refereed journals
Kavamura, V. N., Robinson, R. J., Hayat, R., Clark, I. M., Hughes, D. J., Rossmann, M., Hirsch, P. R., Mendes, R. and Mauchline, T. H. 2019. Land management and microbial seed load effect on rhizosphere and endosphere bacterial community assembly in wheat. Frontiers in Microbiology. 10 (2625). https://doi.org/10.3389/fmicb.2019.02625
Plant–microbe networks in soil are weakened by century‐long use of inorganic fertilizers
A - Papers appearing in refereed journals
Huang, R., McGrath, S. P., Hirsch, P. R., Clark, I. M., Storkey, J., Wu, L., Zhou, J. and Liang, Y. 2019. Plant–microbe networks in soil are weakened by century‐long use of inorganic fertilizers. Microbial Biotechnology. 12 (6), pp. 1464-1475. https://doi.org/10.1111/1751-7915.13487
Learning to love the world's most hated crop
A - Papers appearing in refereed journals
Jackson, T. A., Crawford, J. W., Traeholt, C. and Sanders, T. A. B. 2019. Learning to love the world's most hated crop. Journal of Oil Palm Research. 31 (September), pp. 331-347. https://doi.org/10.21894/jopr.2019.0046
Estimation of the iron bioavailability in green vegetables using an in vitro digestion/Caco-2 cell model
A - Papers appearing in refereed journals
Rodriguez-Ramiro, I., Dellaquila, C., Ward, J. L., Neal, A. L., Bruggaber, S. F. A, Shewry, P. R. and Fairweather-Tail, S. 2019. Estimation of the iron bioavailability in green vegetables using an in vitro digestion/Caco-2 cell model. Food Chemistry. 301 (15 December), p. 125292. https://doi.org/10.1016/j.foodchem.2019.125292
Hydrogeophysics for agriculture - Capabilities and Limitations
A - Papers appearing in refereed journals
Blanchy, G., Watts, C. W. and Binley, A. 2019. Hydrogeophysics for agriculture - Capabilities and Limitations. Landwards. 74 (3), pp. 19(i-iii).
Evidence for diversifying selection of genetic regions of encoding putative collagen-like host-adhesive fibers in Pasteuria penetrans
A - Papers appearing in refereed journals
Srivastava, A., Mohan, S., Mauchline, T. H. and Davies, K. G. 2019. Evidence for diversifying selection of genetic regions of encoding putative collagen-like host-adhesive fibers in Pasteuria penetrans . FEMS Microbiology Ecology. 95 (1), p. fiy217. https://doi.org/10.1093/femsec/fiy217
Analysis of variance in soil research: Examining the assumptions
A - Papers appearing in refereed journals
Webster, R. and Lark, R. M. 2019. Analysis of variance in soil research: Examining the assumptions. European Journal of Soil Science. 70 (5), pp. 990-1000. https://doi.org/10.1111/ejss.12804
Microorganisms Cycling Soil Nutrients
B - Book chapters etc edited externally
Hirsch, P. R. 2019. Microorganisms Cycling Soil Nutrients. in: Modern Soil Microbiology Florida CRC Press. pp. 179-192
Exploring future food provision scenarios for China
A - Papers appearing in refereed journals
Ma, L., Bai, Z., Ma, M., Guo, M., Jiang, R., Liu, J., Oenema, O., Velthof, G. L., Whitmore, A. P., Crawford, J. W., Dobermann, A., Schwoob, M. and Zhang, F. 2019. Exploring future food provision scenarios for China. Environmental Science & Technology. 53 (3), pp. 1385-1393. https://doi.org/10.1021/acs.est.8b04375
Multiple abiotic stress, nitrate availability and the growth of wheat
A - Papers appearing in refereed journals
Ge, Y., Hawkesford, M. J., Rosolem, C. A., Mooney, S. J., Ashton, R. W., Evans, J. and Whalley, W. R. 2019. Multiple abiotic stress, nitrate availability and the growth of wheat . Soil & Tillage Research. 191 (August), pp. 171-184. https://doi.org/10.1016/j.still.2019.04.005
Landmark Papers: No. 8 Burgess, T.M. & Webster, R. 1980. Optimal interpolation and isarithmic mapping of soil properties. I. The semi-variogram and punctual kriging. Journal of Soil Science, 31, 315–331 Reflections by R. Webster
A - Papers appearing in refereed journals
Webster, R. 2019. Landmark Papers: No. 8 Burgess, T.M. & Webster, R. 1980. Optimal interpolation and isarithmic mapping of soil properties. I. The semi-variogram and punctual kriging. Journal of Soil Science, 31, 315–331 Reflections by R. Webster. European Journal of Soil Science. 2019 (70), pp. 2-6. https://doi.org/10.1111/ejss.12750
Optimal interpolation and isarithmic mapping of soil properties .1. The semi-variogram and punctual kriging
A - Papers appearing in refereed journals
Burgess, T. M. and Webster, R. 2019. Optimal interpolation and isarithmic mapping of soil properties .1. The semi-variogram and punctual kriging. European Journal of Soil Science. 70 (1), pp. 11-19. https://doi.org/10.1111/ejss.12784
The role of plant species and soil condition in the structural development of the rhizosphere
A - Papers appearing in refereed journals
Helliwell, J. R., Sturrock, C. J., Miller, A. J., Whalley, W. R. and Mooney, S. J. 2019. The role of plant species and soil condition in the structural development of the rhizosphere. Plant, Cell and Environment. 42 (6), pp. 1974-1986. https://doi.org/10.1111/pce.13529
Soil water contents for tillage : a comparison of approaches and consequences for the number of workable days
A - Papers appearing in refereed journals
Obour, P. B., Keller, T., Jensen, J. L., Edwards, G., Lamande, M., Watts, C. W., Sorensen, C. G and Munkholm, L. J. 2019. Soil water contents for tillage : a comparison of approaches and consequences for the number of workable days . Soil & Tillage Research. 195, p. 104384. https://doi.org/10.1016/j.still.2019.104384
Phacelia (Phacelia tanacetifolia Benth.) affects soil structure differently depending on soil texture
A - Papers appearing in refereed journals
Bacq-Labreuil, A., Crawford, J. W., Mooney, S., Neal, A. L. and Ritz, K. 2019. Phacelia (Phacelia tanacetifolia Benth.) affects soil structure differently depending on soil texture. Plant and Soil. 441 (1-2), p. 543–554. https://doi.org/10.1007/s11104-019-04144-4
A high-resolution map of soil pH in China made by hybrid modelling of sparse soil data and environmental covariates and its implications for pollution
A - Papers appearing in refereed journals
Chen, S., Liang, Z., Webster, R., Zhang, G., Zhou, Y., Teng, H., Hi, B., Arrouays, D. and Shi, Z. 2019. A high-resolution map of soil pH in China made by hybrid modelling of sparse soil data and environmental covariates and its implications for pollution. Science of the Total Environment. 655, pp. 273-283. https://doi.org/10.1016/j.scitotenv.2018.11.230
Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype
A - Papers appearing in refereed journals
Bacq-Labreuil, A., Crawford, J. W., Mooney, S., Neal, A. L. and Ritz, K. 2019. Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype. Scientific Reports. 9 (7473). https://doi.org/10.1038/s41598-019-43937-6
Increasing livestock wastewater application in alternate-furrow irrigation reduces nitrification gene abundance but not nitrification rate in rhizosphere
A - Papers appearing in refereed journals
Lui, Y., Neal, A. L., Zhang, X., Cui, E., Gao, F., Fan, X., Hu, C. and Li, Z. 2019. Increasing livestock wastewater application in alternate-furrow irrigation reduces nitrification gene abundance but not nitrification rate in rhizosphere. Biology And Fertility Of Soils. pp. 1-17. https://doi.org/10.1007/s00374-019-01361-y
Calcium Exerts a Strong Influence upon Phosphohydrolase Gene Abundance and Phylogenetic Diversity in Soil
A - Papers appearing in refereed journals
Neal, A. L. and Glendining, M. L. 2019. Calcium Exerts a Strong Influence upon Phosphohydrolase Gene Abundance and Phylogenetic Diversity in Soil. Soil Biology and Biochemistry. 139 (December), p. 107613. https://doi.org/10.1016/j.soilbio.2019.107613
Variations in soil and plant-microbiome composition with different quality irrigation waters and biochar supplementation
A - Papers appearing in refereed journals
Cui, E., Fan, X., Li, Z., Liu, Y., Neal, A. L., Hu, C. and Gao, F. 2019. Variations in soil and plant-microbiome composition with different quality irrigation waters and biochar supplementation. Applied Soil Ecology. 142, pp. 99-109. https://doi.org/10.1016/j.apsoil.2019.04.026
The relationships between seedling root screens, root growth in the field and grain yield for wheat
A - Papers appearing in refereed journals
Bai, C., Ge, Y., Ashton, R. W., Evans, J., Milne, A. E., Hawkesford, M. J., Whalley, W. R., Parry, M. A. J., Melichar, J., Feuerhelm, D., Bansept, P. and Bartsch, M. 2019. The relationships between seedling root screens, root growth in the field and grain yield for wheat . Plant and Soil. https://doi.org/10.1007/s11104-019-04088-9
Baseline map of soil organic carbon in Tibet and its uncertainty in the 1980s
A - Papers appearing in refereed journals
Zhou, Y., Webster, R., Viscara Rossel, R. A., Shi, Z. and Chen, S. 2019. Baseline map of soil organic carbon in Tibet and its uncertainty in the 1980s. Geoderma. 334, pp. 123-133. https://doi.org/10.1016/j.geoderma.2018.07.037
Relating soil C and organic matter fractions to structural stability
A - Papers appearing in refereed journals
Jensen, J. L., Schjonning, P., Watts, C. W., Christensen, B. T., Peltre, C. and Munkholm, L. 2019. Relating soil C and organic matter fractions to structural stability. Geoderma. 337 (1 March), pp. 834-843. https://doi.org/10.1016/j.geoderma.2018.10.034
Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture.
A - Papers appearing in refereed journals
Bacq-Labreuila, A., Crawford, J. W., Mooney, S. J., Neal, A. L., Akkari, E., McAuliffe, C., Zhang, X., Redmile-Gordon, M. A. and Ritz, K. 2018. Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture. Geoderma. 332, pp. 73-83. https://doi.org/10.1016/j.geoderma.2018.07.002
Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances
A - Papers appearing in refereed journals
Taketani, R. G., Moitinho, M. A., Mauchline, T. H. and Melo, I. S. 2018. Co-occurrence patterns of litter decomposing communities in mangroves indicate a robust community resistant to disturbances. PeerJ. 6, p. e5710. https://doi.org/10.7717/peerj.5710
Shrinkage characteristics of lime concretion black soil as affected by biochar amendment
A - Papers appearing in refereed journals
Wei, C., Gao, W., Whalley, W. R. and Li, B. 2018. Shrinkage characteristics of lime concretion black soil as affected by biochar amendment. Pedosphere. 28 (5), pp. 713-725. https://doi.org/10.1016/S1002-0160(18)60041-4
A Lattice Boltzmann model for 2D fractional advection-dispersion equation: Theory and application
A - Papers appearing in refereed journals
Wang, F., Zhang, X., Shen, X. and Sun, J, 2018. A Lattice Boltzmann model for 2D fractional advection-dispersion equation: Theory and application . Journal of Hydrology. 564 (564), pp. 246-255. https://doi.org/10.1016/j.jhydrol.2018.06.083
Direct methods to calculate the mass exchange between solutes inside and outside aggregates in macroscopic model for solute transport in aggregated soil
A - Papers appearing in refereed journals
Zhang, X., Wang, D. and Liu, Y. 2018. Direct methods to calculate the mass exchange between solutes inside and outside aggregates in macroscopic model for solute transport in aggregated soil. Geoderma. 320 (15), pp. 126-135. https://doi.org/10.1016/j.geoderma.2018.01.021
Quantifying Network Dynamics and Information Flow Across Chinese Social Media During the African Ebola Outbreak
A - Papers appearing in refereed journals
Feng, S., Hossain, L., Crawford, J. W. and Bossomaier, T. 2018. Quantifying Network Dynamics and Information Flow Across Chinese Social Media During the African Ebola Outbreak. Disaster Medicine and Public Health Preparedness. 12 (1), pp. 26-37. https://doi.org/10.1017/dmp.2017.29
Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive
E - Books edited/written by staff member, alone/with others
Macdonald, A. J., Poulton, P. R., Clark, I. M., Scott, T., Glendining, M. J., Perryman, S. A. M., Storkey, J., Bell, J. R., Shield, I. F., Mcmillan, V. E. and Hawkins, J. M. B. Macdonald, A. J. (ed.) 2018. Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive. Rothamsted Research, Harpenden.
The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management
A - Papers appearing in refereed journals
Fu, Q., Clark, I. M., Zhu, J., Hu, H. Q. and Hirsch, P. R. 2018. The short-term effects of nitrification inhibitors on the abundance and expression of ammonia and nitrite oxidizers in a long-term field experiment comparing land management. Biology And Fertility Of Soils. 54 (1), pp. 163-172. https://doi.org/10.1007/s00374-017-1249-2
Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil
A - Papers appearing in refereed journals
Mauchline, T. H., Hayat, R., Clark, I. M. and Hirsch, P. R. 2018. Old meets new: most probable number validation of metagenomic and metatranscriptomic datasets in soil. Letters in Applied Microbiology. 66 (1), pp. 14-18. https://doi.org/10.1111/lam.12821
Analysis of variance in soil research : let the analysis fit the action
A - Papers appearing in refereed journals
Webster, R. and Lark, R. M. 2018. Analysis of variance in soil research : let the analysis fit the action. European Journal of Soil Science. 69 (1), pp. 216-139. https://doi.org/10.1111/ejss.12511