SAS-H: Soil Biology
| Title | SAS-H: Soil Biology |
|---|---|
| Type | Research cluster |
Outputs
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Life in earth – the root microbiome to the rescue?
A - Papers appearing in refereed journals
Mauchline, T. H. and Malone, J. G. 2017. Life in earth – the root microbiome to the rescue? Current Opinion in Microbiology. 37 (Supplement C), pp. 23-28. https://doi.org/10.1016/j.mib.2017.03.005
A recovery principle provides insight into auxin pattern control in the Arabidopsis root
A - Papers appearing in refereed journals
Moore, S., Liu, J., Zhang, X. and Lindsey, K. 2017. A recovery principle provides insight into auxin pattern control in the Arabidopsis root. Scientific Reports. 7, p. 43004. https://doi.org/10.1038/srep43004
Soil texture analysis revisited: Removal of organic matter matters more than ever
A - Papers appearing in refereed journals
Jensen, J. L., Schjonning, P., Watts, C. W., Christensen, B. T. and Munkholm, L. J. 2017. Soil texture analysis revisited: Removal of organic matter matters more than ever. PLOS ONE. 12 (5), p. 10p. https://doi.org/10.1371/journal.pone.0178039
Exploitation of endophytes for sustainable agricultural intensification Exploitation of endophytes
A - Papers appearing in refereed journals
Le Cocq, K., Gurr, S. J., Hirsch, P. R. and Mauchline, T. H. 2017. Exploitation of endophytes for sustainable agricultural intensification Exploitation of endophytes. Molecular Plant Pathology. 18 (3), pp. 469-473. https://doi.org/10.1111/mpp.12483
Sediment transfer at different spatial and temporal scales in the Sichuan Hilly Basin, China: Synthesizing data from multiple approaches and preliminary interpretation in the context of climatic and anthropogenic drivers
A - Papers appearing in refereed journals
Golosov, V., Collins, A. L., Tang, Q., Zhang, X., Zhou, P., He, X. and Wen, A. 2017. Sediment transfer at different spatial and temporal scales in the Sichuan Hilly Basin, China: Synthesizing data from multiple approaches and preliminary interpretation in the context of climatic and anthropogenic drivers. Science of the Total Environment. 598 (15 November), pp. 319-329. https://doi.org/10.1016/j.scitotenv.2017.04.133
Fate of 210Pb ex fallout in soil under forest and scrub of the central Spanish Pre-Pyrenees
A - Papers appearing in refereed journals
Gaspar, L., Webster, R. and Navas, A. 2017. Fate of 210Pb ex fallout in soil under forest and scrub of the central Spanish Pre-Pyrenees. European Journal of Soil Science. 68 (3), pp. 259-269. https://doi.org/10.1111/ejss.12427
Assessing sampling designs for determining fertilizer practice from yield data
A - Papers appearing in refereed journals
Muhammed, S. E., Marchant, B. P., Webster, R., Whitmore, A. P., Dailey, A. G. and Milne, A. E. 2017. Assessing sampling designs for determining fertilizer practice from yield data. Computers and Electronics in Agriculture. 135 (1 April), pp. 163-174. https://doi.org/10.1016/j.compag.2017.02.002
Milled cereal straw accelerates earthworm (Lumbricus terrestris) growth more than selected organic amendments
A - Papers appearing in refereed journals
Sizmur, T., Martin, E., Wagner, K., Parmentier, E., Watts, C. W. and Whitmore, A. P. 2017. Milled cereal straw accelerates earthworm (Lumbricus terrestris) growth more than selected organic amendments. Applied Soil Ecology. 113 (May), pp. 166-177. https://doi.org/10.1016/j.apsoil.2016.12.006
On the effectiveness of GPR early-time analysis for mapping soil water content
C1 - Edited contributions to conferences/learned societies
Van Dam, R. L., Alegro, J., Slater, L. D. and Watts, C. W. 2017. On the effectiveness of GPR early-time analysis for mapping soil water content. Proceedings 15th International Congress of the Brazillian Geophysical Society, Rio de Janeiro, 31st July-3rd August, 2017. Sociedade Brasileira de Geofisica. pp. 3pp https://doi.org/10.1190/sbgf2017-141
Identification and expression profile analysis of odorant binding protein and chemosensory protein genes in Bemisia tabaci MED by head transcriptome
A - Papers appearing in refereed journals
Wang, R., Li, F., Zhang, W., Zhang, X., Qu, C., Tetreau, G., Sun, L., Luo, C. and Zhou, J. 2017. Identification and expression profile analysis of odorant binding protein and chemosensory protein genes in Bemisia tabaci MED by head transcriptome. PLOS ONE. (e0171739), p. 19pp. https://doi.org/10.1371/journal.pone.0171739
Acid drainage from coal mining: Effect on paddy soil and productivity of rice
A - Papers appearing in refereed journals
Choudhury, B. U., Malang, A., Webster, R., Mohapatra, K. P., Verma, B. C., Kumar, M., Das, A., Islam, M. and Hazarika, S. 2017. Acid drainage from coal mining: Effect on paddy soil and productivity of rice. Science of the Total Environment. 583 (1 April), pp. 344-351. https://doi.org/10.1016/j.scitotenv.2017.01.074
Soil resilience and recovery: rapid community responses to management changes
A - Papers appearing in refereed journals
Hirsch, P. R., Jhurreea, D., Williams, J. K., Murray, P. J., Scott, T., Misselbrook, T. H., Goulding, K. W. T. and Clark, I. M. 2017. Soil resilience and recovery: rapid community responses to management changes. Plant and Soil. 412 (1-2), pp. 283-297. https://doi.org/10.1007/s11104-016-3068-x
Methods to estimate changes in soil water for phenotyping root activity in the field
A - Papers appearing in refereed journals
Whalley, W. R., Binley, A., Watts, C. W., Shanahan, P., Dodd, I. C., Ober, E. S., Ashton, R. W., Webster, C. P., White, R. P. and Hawkesford, M. J. 2017. Methods to estimate changes in soil water for phenotyping root activity in the field. Plant and Soil. 415 (1-2), pp. 407-422. https://doi.org/10.1007/s11104-016-3161-1
Cover cropping with oilseed radish (Raphanus sativus) alone does not enhance deep burrowing earthworm (Lumbricus terrestris) midden counts
A - Papers appearing in refereed journals
Stroud, J. L., Irons, D. E., Watts, C. W., Storkey, J., Morris, N. L., Stobart, R. M., Fielding, H. A. and Whitmore, A. P. 2017. Cover cropping with oilseed radish (Raphanus sativus) alone does not enhance deep burrowing earthworm (Lumbricus terrestris) midden counts. Soil & Tillage Research. 165 (January), pp. 11-15. https://doi.org/10.1016/j.still.2016.07.013
Replicate and randomize, or lie
A - Papers appearing in refereed journals
Webster, R. 2017. Replicate and randomize, or lie. Environmental Microbiology. 19 (1), pp. 25-28. https://doi.org/10.1111/1462-2920.13533
Land-use influences phosphatase gene microdiversity in soils
A - Papers appearing in refereed journals
Neal, A. L., Rossmann, M., Brearley, C., Akkari, E., Guyomar, C., Clark, I. M., Allen, E. and Hirsch, P. R. 2017. Land-use influences phosphatase gene microdiversity in soils. Environmental Microbiology. 19 (7), p. 2740–2753. https://doi.org/10.1111/1462-2920.13778
Effects of cover crops on phosphatase activity in a clay arable soil in the UK
C1 - Edited contributions to conferences/learned societies
Reynolds, S. H., Ritz, K., Crotty, F. V., Stoate, C., West, H. and Neal, A. L. 2017. Effects of cover crops on phosphatase activity in a clay arable soil in the UK. Association of Applied Biologists (AAB).
Soil aggregate stability and macrofauna as indicators of soil health and sustainable agricultural systems
Conference paper
Stroud, J. L. and Watts, C. W. 2017. Soil aggregate stability and macrofauna as indicators of soil health and sustainable agricultural systems. International Fertiliser Society 810. International Fertiliser Society (IFS).
The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface
A - Papers appearing in refereed journals
Helliwell, J. R., Sturrock, C. J., Mairhofer, S., Craigon, J., Ashton, R. W., Miller, A. J., Whalley, W. R. and Mooney, S. J. 2017. The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface. Scientific Reports. 7, p. 14875. https://doi.org/10.1038/s41598-017-14904-w
Enhanced Plant Rooting and Crop System Management for Improved N Use Efficiency
B - Book chapters etc edited externally
Rosolem, C. A., Ritz, K., Cantarella, H., Hawkesford, M. J., Whalley, W. R. and Mooney, S. J. 2017. Enhanced Plant Rooting and Crop System Management for Improved N Use Efficiency. in: Sparks, D. L. (ed.) Advances in Agronomy Vol.146 Academic Press Inc Elsevier Science.
Root growth in field-grown winter wheat: Some effects of soil conditions, season and genotype.
A - Papers appearing in refereed journals
Hodgkinson, L., Dodd, I. C., Binley, A., Ashton, R. W., White, R. P., Watts, C. W. and Whalley, W. R. 2017. Root growth in field-grown winter wheat: Some effects of soil conditions, season and genotype. European Journal of Agronomy. 91 (November), pp. 74-83. https://doi.org/10.1016/j.eja.2017.09.014
A Novel Method to Quantify Soil Aggregate Stability by Measuring Aggregate Bond Energies
A - Papers appearing in refereed journals
Efrat, R., Rawlins, B. G., Quinton, J. N., Watts, C. W. and Whitmore, A. P. 2016. A Novel Method to Quantify Soil Aggregate Stability by Measuring Aggregate Bond Energies. Geophysical Research Abstracts. 18, pp. EGU2016-513-3.
Unraveling the mechanistic complexity of Alzheimer's disease through systems biology
A - Papers appearing in refereed journals
Rollo, J. L., Banihashemi, N., Vafaee, F., Crawford, J. W., Kuncic, Z. and Holsinger, R. M. D. 2016. Unraveling the mechanistic complexity of Alzheimer's disease through systems biology. Alzheimers & Dementia. 12 (6), pp. 708-718. https://doi.org/10.1016/j.jalz.2015.10.010
Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides
A - Papers appearing in refereed journals
Nguyen, Don D., Melnik, Alexey V., Koyama, N., Lu, Xiaowen, Schorn, Michelle, Fang, Jinshu, Aguinaldo, Kristen, Lincecum Jr, Tommie L., Ghequire, Maarten G. K., Carrion, Victor J., Cheng, Tina L., Duggan, Brendan M., Malone, Jacob G., Mauchline, T. H., Sanchez, Laura M., Kilpatrick, A. Marm, Raaijmakers, Jos M., De Mot, René, Moore, Bradley S., Medema, Marnix H. and Dorrestein, Pieter C. 2016. Indexing the Pseudomonas specialized metabolome enabled the discovery of poaeamide B and the bananamides. Nature Microbiology. 2, p. 16197. https://doi.org/10.1038/nmicrobiol.2016.197
Coupled incorporation of maize (Zea mays L.) straw with nitrogen fertilizer increased soil organic carbon in Fluvic Cambisol
A - Papers appearing in refereed journals
Meng, F., Dungait, J. A. J., Xu, X., Bol, R., Zhang, X. and Wu, W. 2016. Coupled incorporation of maize (Zea mays L.) straw with nitrogen fertilizer increased soil organic carbon in Fluvic Cambisol. Geoderma. 304, pp. 19-27. https://doi.org/10.1016/j.geoderma.2016.09.010
Long-Term Impact of Field Applications of Sewage Sludge on Soil Antibiotic Resistome
A - Papers appearing in refereed journals
Xie, W-Y., McGrath, S. P., Su, J. Q., Hirsch, P. R., Clark, I. M., Shen, Q., Zhu, Y-G. and Zhao, F-J. 2016. Long-Term Impact of Field Applications of Sewage Sludge on Soil Antibiotic Resistome. Environmental Science & Technology. 50 (23), pp. 12602-12611. https://doi.org/10.1021/acs.est.6b02138
A multi-scale Lattice Boltzmann model for simulating solute transport in 3D X-ray micro-tomography images of aggregated porous materials
A - Papers appearing in refereed journals
Zhang, X. X., Crawford, J. W., Flavel, R. J. and Young, I. M. 2016. A multi-scale Lattice Boltzmann model for simulating solute transport in 3D X-ray micro-tomography images of aggregated porous materials. Journal of Hydrology. 541 (Part B), pp. 1020-1029. https://doi.org/10.1016/j.jhydrol.2016.08.013
Responses of microbial community from tropical pristine coastal soil to crude oil contamination
A - Papers appearing in refereed journals
Morais, D., Pylro, V., Clark, I. M., Hirsch, P. R. and Totola, M. R. 2016. Responses of microbial community from tropical pristine coastal soil to crude oil contamination. PeerJ. 4. https://doi.org/10.7717/peerj.1733
Increased soil phosphorus availability induced by faba bean root exudation stimulates root growth and phosphorus uptake in neighbouring maize
A - Papers appearing in refereed journals
Zhang, D. S., Zhang, C. C., Tang, X. Y., Li, H. G., Zhang, F-S., Rengel, Z., Whalley, W. R., Davies, W. J. and Shen, J. B. 2016. Increased soil phosphorus availability induced by faba bean root exudation stimulates root growth and phosphorus uptake in neighbouring maize. New Phytologist. 209 (2), pp. 823-831. https://doi.org/10.1111/nph.13613
Lumbricus terrestris middens are biological and chemical hotspots in a minimum tillage arable ecosystem
A - Papers appearing in refereed journals
Stroud, J. L., Irons, D. E., Carter, J. E., Watts, C. W., Murray, P. J., Norris, S. L. and Whitmore, A. P. 2016. Lumbricus terrestris middens are biological and chemical hotspots in a minimum tillage arable ecosystem. Applied Soil Ecology. 105, pp. 31-35. https://doi.org/10.1016/j.apsoil.2016.03.019
Misguided phylogenetic comparisons using DGGE excised bands may contaminate public sequence databases
A - Papers appearing in refereed journals
Pylro, V. S., Morais, D. K., Kalks, K. H. M., Roesch, L. F. W., Hirsch, P. R., Totola, M. R. and Yotoko, K. 2016. Misguided phylogenetic comparisons using DGGE excised bands may contaminate public sequence databases. Journal of Microbiological Methods. 126, pp. 18-23. https://doi.org/10.1016/j.mimet.2016.04.012
Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability
A - Papers appearing in refereed journals
Robinson, R. J., Fraaije, B. A., Clark, I. M., Jackson, R. W., Hirsch, P. R. and Mauchline, T. H. 2016. Endophytic bacterial community composition in wheat (Triticum aestivum) is determined by plant tissue type, developmental stage and soil nutrient availability. Plant and Soil. 405 (1-2), pp. 381-396. https://doi.org/10.1007/s11104-015-2495-4
Lumbricus terrestris abundance is not enhanced after three years of compost amendments on a reduced tillage wheat cultivation conversion
A - Papers appearing in refereed journals
Stroud, J. L., Irons, D., Watts, C. W. and Whitmore, A. P. 2016. Lumbricus terrestris abundance is not enhanced after three years of compost amendments on a reduced tillage wheat cultivation conversion. Applied Soil Ecology. 98, pp. 282-284. https://doi.org/10.1016/j.apsoil.2015.10.007
On the theory of Brutsaert about elastic wave speeds in unsaturated soils
A - Papers appearing in refereed journals
Shin, H., Whalley, W. R., Attenborough, K. and Taherzadeh, S. 2016. On the theory of Brutsaert about elastic wave speeds in unsaturated soils. Soil & Tillage Research. 156, pp. 155-165. https://doi.org/10.1016/j.still.2015.10.006
Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen
A - Papers appearing in refereed journals
Mehrabi, Z., Mcmillan, V. E., Clark, I. M., Canning, G., Hammond-Kosack, K. E., Preston, G., Hirsch, P. R. and Mauchline, T. H. 2016. Pseudomonas spp. diversity is negatively associated with suppression of the wheat take-all pathogen. Scientific Reports. 6. https://doi.org/10.1038/srep29905
Optimizing rice plant photosynthate allocation reduces N2O emissions from paddy fields
A - Papers appearing in refereed journals
Jiang, Y., Huang, X. M., Zhang, X., Zhang, X. Y., Zhang, Y., Zheng, C. Y., Deng, A. X., Zhang, J., Wu, L. H., Hu, S. J. and Zhang, W. J. 2016. Optimizing rice plant photosynthate allocation reduces N2O emissions from paddy fields. Scientific Reports. 6. https://doi.org/10.1038/srep29333
A simple model to predict soil penetrometer resistance as a function of density, drying and depth in the field
A - Papers appearing in refereed journals
Gao, W. D., Whalley, W. R., Tian, Z. C., Liu, J. and Ren, T. S. 2016. A simple model to predict soil penetrometer resistance as a function of density, drying and depth in the field. Soil & Tillage Research. 155, pp. 190-198. https://doi.org/10.1016/j.still.2015.08.004
Major crop species show differential balance between root morphological and physiological responses to variable phosphorus supply
A - Papers appearing in refereed journals
Lyu, Y., Tang, H. L., Li, H. G., Zhang, F-S., Rengel, Z., Whalley, W. R., Shen, J. B. and Stralia, V. P. 2016. Major crop species show differential balance between root morphological and physiological responses to variable phosphorus supply. Frontiers in Plant Science. 7. https://doi.org/10.3389/fpls.2016.01939
Population collapse of Lumbricus terrestris in conventional arable cultivations and response to straw applications
A - Papers appearing in refereed journals
Stroud, J. L., Irons, D. E., Watts, C. W., White, R. P., McGrath, S. P. and Whitmore, A. P. 2016. Population collapse of Lumbricus terrestris in conventional arable cultivations and response to straw applications. Applied Soil Ecology. 108 (December), pp. 72-75. https://doi.org/10.1016/j.apsoil.2016.08.002
A Lattice Boltzmann model for simulating water flow at pore scale in unsaturated soils
A - Papers appearing in refereed journals
Zhang, X., Crawford, J. W. and Young, I. M. 2016. A Lattice Boltzmann model for simulating water flow at pore scale in unsaturated soils. Journal of Hydrology. 538, pp. 152-160. https://doi.org/10.1016/j.jhydrol.2016.04.013