PLOS ONE

Journal

TitlePLOS ONE
ISSN1932-6203
PublisherPublic Library of Science (PLOS)
Notes

No embargo on manuscript

Web address (URL)http://journals.plos.org/plosone/s/journal-information

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Agricultural Management and Climatic Change Are the Major Drivers of Biodiversity Change in the UK

A - Papers appearing in refereed journals
Burns, F., Eaton, M. A., Barlow, K. E., Beckmann, B. C., Brereton, T., Brooks, D. R., Brown, P. M. J., Al Fulaij, N., Gent, T., Henderson, I., Noble, D. G., Parsons, M., Powney, G. D., Roy, H. E., Stroh, P., Walker, K., Wilkinson, J. W., Wotton, S. R. and Gregory, R. D. 2016. Agricultural Management and Climatic Change Are the Major Drivers of Biodiversity Change in the UK. PLOS ONE. 11 (3). https://doi.org/10.1371/journal.pone.0151595

Novel mutations in the voltage-gated sodium channel of pyrethroid-resistant Varroa destructor populations from the Southeastern USA

A - Papers appearing in refereed journals
Gonzalez-Cabrera, J., Rodriguez-Vargas, S., Davies, T. G. E., Field, L. M., Schmehl, D., Ellis, J. D., Krieger, K. and Williamson, M. S. 2016. Novel mutations in the voltage-gated sodium channel of pyrethroid-resistant Varroa destructor populations from the Southeastern USA. PLOS ONE. 11 (5). https://doi.org/10.1371/journal.pone.0155332

An Indirect Defence Trait Mediated through Egg-Induced Maize Volatiles from Neighbouring Plants

A - Papers appearing in refereed journals
Mutyambai, D. M., Bruce, T. J. A., Van Den Berg, J., Midega, C. A. O., Pickett, J. A. and Khan, Z. R. 2016. An Indirect Defence Trait Mediated through Egg-Induced Maize Volatiles from Neighbouring Plants. PLOS ONE. 11 (7). https://doi.org/10.1371/journal.pone.0158744

Nutritional Evaluation of an EPA-DHA Oil from Transgenic Camelina sativa in Feeds for Post-Smolt Atlantic Salmon (Salmo salar L.)

A - Papers appearing in refereed journals
Betancor, M. B., Sprague, M., Sayanova, O. V., Usher, S., Metochis, C., Campbell, P. J., Napier, J. A. and Tocher, D. R. 2016. Nutritional Evaluation of an EPA-DHA Oil from Transgenic Camelina sativa in Feeds for Post-Smolt Atlantic Salmon (Salmo salar L.). PLOS ONE. 11 (7). https://doi.org/10.1371/journal.pone.0159934

Life-long radar tracking of bumblebees

A - Papers appearing in refereed journals
Woodgate, J. L., Makinson, J. C., Lim, K. S., Reynolds, A. M. and Chittka, L. 2016. Life-long radar tracking of bumblebees. PLOS ONE. 11 (8). https://doi.org/10.1371/journal.pone.0160333

Dual Fatty Acid Elongase Complex Interactions in Arabidopsis

A - Papers appearing in refereed journals
Morineau, C., Gissot, L., Bellec, Y., Hematy, K., Tellier, F., Renne, C., Haslam, R. P., Beaudoin, F., Napier, J. A. and Faure, J. D. 2016. Dual Fatty Acid Elongase Complex Interactions in Arabidopsis. PLOS ONE. 11 (9), p. 20. https://doi.org/10.1371/journal.pone.0160631

Metabolome analysis reveals betaine lipids as major source for triglyceride formation, and the accumulation of sedoheptulose during nitrogen-starvation of Phaeodactylum tricornutum

A - Papers appearing in refereed journals
Popko, J., Herrfurth, C., Feussner, K., Ischebeck, T., Iven, T., Haslam, R. P., Hamilton, M. L., Sayanova, O. V., Napier, J. A., Khozin-Goldberg, I. and Feussner, I. 2016. Metabolome analysis reveals betaine lipids as major source for triglyceride formation, and the accumulation of sedoheptulose during nitrogen-starvation of Phaeodactylum tricornutum. PLOS ONE. 11 (10), p. e0164674. https://doi.org/10.1371/journal.pone.0164673

The evolution of fungicide resistance resulting from combinations of foliar-acting systemic seed treatments and foliar-applied fungicides: a modeling analysis

A - Papers appearing in refereed journals
Kitchen, J. L., Van Den Bosch, F., Paveley, N. D., Helps, J. and Van Den Berg, F. 2016. The evolution of fungicide resistance resulting from combinations of foliar-acting systemic seed treatments and foliar-applied fungicides: a modeling analysis. PLOS ONE. 11 (8), p. e0161887. https://doi.org/10.1371/journal.pone.0161887

Exploiting Co-Benefits of Increased Rice Production and Reduced Greenhouse Gas Emission through Optimized Crop and Soil Management

A - Papers appearing in refereed journals
An, N., Fan, M., Zhang, F., Christie, P., Yang, J., Huang, J., Guo, S., Shi, X., Tang, Q., Peng, J., Zhong, X., Sun, Y., Lv, S., Jiang, R. and Dobermann, A. 2015. Exploiting Co-Benefits of Increased Rice Production and Reduced Greenhouse Gas Emission through Optimized Crop and Soil Management. PLOS ONE. 10 (10), p. e0140023. https://doi.org/10.1371/journal.pone.0140023

Organic farming: biodiversity impacts can depend on dispersal characteristics and landscape context

A - Papers appearing in refereed journals
Feber, R., E., Johnson, PJ., Bell, J. R., Chamberlain, D. E., Firbank, L. G., Fuller, R. J., Manley, W., Mathews, F., Norton, L. R., Townsend, M. and Macdonald, D. W. 2015. Organic farming: biodiversity impacts can depend on dispersal characteristics and landscape context. PLOS ONE. 10 (8), p. e0135921. https://doi.org/10.1371/journal.pone.0135921

Towards the industrial production of omega-3 long chain polyunsaturated fatty acids from a genetically modified diatom Phaeodactylum tricornutum

A - Papers appearing in refereed journals
Hamilton, M. L., Warwick, J., Terry, A., Allen, M. J., Napier, J. A. and Sayanova, O. V. 2015. Towards the industrial production of omega-3 long chain polyunsaturated fatty acids from a genetically modified diatom Phaeodactylum tricornutum. PLOS ONE. 10, p. e0144054. https://doi.org/10.1371/journal.pone.0144054

Incidence, spread and mechanisms of pyrethroid resistance in European populations of the cabbage stem flea beetle, Psylliodes chrysocephala L. (Coleoptera: Chrysomelidae)

A - Papers appearing in refereed journals
Hojland, D. H., Nauen, R., Foster, S. P., Williamson, M. S. and Kristensen, M. 2015. Incidence, spread and mechanisms of pyrethroid resistance in European populations of the cabbage stem flea beetle, Psylliodes chrysocephala L. (Coleoptera: Chrysomelidae). PLOS ONE. 10, p. e0146045. https://doi.org/10.1371/journal.pone.0146045

The Aspergillus fumigatus pkcA G579R mutant is defective in the activation of the cell wall integrity pathway but is dispensable for virulence in a neutropenic mouse infection model

A - Papers appearing in refereed journals
Rocha, M. C., De Godoy, K. F., De Castro, P. A., Hori, J. I., Bom, V. L. P., Brown, N. A., Da Cunha, A. F., Goldman, G. H. and Malavazi, I. 2015. The Aspergillus fumigatus pkcA G579R mutant is defective in the activation of the cell wall integrity pathway but is dispensable for virulence in a neutropenic mouse infection model. PLOS ONE. 10, p. e0135195. https://doi.org/10.1371/journal.pone.0135195

Mutation scanning in wheat by exon capture and next-generation sequencing

A - Papers appearing in refereed journals
King, R., Bird, N., Ramirez-Gonzalez, R., Coghill, J. A., Patil, A., Hassani-Pak, K., Uauy, C. and Phillips, A. L. 2015. Mutation scanning in wheat by exon capture and next-generation sequencing. PLOS ONE. 10, p. e0137549. https://doi.org/10.1371/journal.pone.0137549

Effects of manipulated above- and belowground organic input on soil respiration in a Chinese pine plantation

A - Papers appearing in refereed journals
Fan, J., Wang, J., Zhao, B., Wu, L., Zhang, C., Zhao, X. and Gadow, K. V. 2015. Effects of manipulated above- and belowground organic input on soil respiration in a Chinese pine plantation. PLOS ONE. 10, p. e126337. https://doi.org/10.1371/journal.pone.0126337

TaER expression is associated with transpiration efficiency traits and yield in bread wheat

A - Papers appearing in refereed journals
Zheng, J., Yang, Z., Madgwick, P. J., Carmo-Silva, E., Parry, M. A. J. and Hu, Y-G. 2015. TaER expression is associated with transpiration efficiency traits and yield in bread wheat. PLOS ONE. 10, p. e0128415. https://doi.org/10.1371/journal.pone.0128415

An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea

A - Papers appearing in refereed journals
Heard, S., Brown, N. A. and Hammond-Kosack, K. E. 2015. An interspecies comparative analysis of the predicted secretomes of the necrotrophic plant pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLOS ONE. 10, p. e0130534. https://doi.org/10.1371/journal.pone.0130534

Heritability of attractiveness to mosquitoes

A - Papers appearing in refereed journals
Fernandez-Grandon, G. M., Gezan, S. A., Armour, J. A. L., Pickett, J. A. and Logan, J. G. 2015. Heritability of attractiveness to mosquitoes. PLOS ONE. 10, p. e0122716. https://doi.org/10.1371/journal.pone.0122716

Detection of powdery mildew in two winter wheat plant densities and prediction of grain yield using canopy hyperspectral reflectance

A - Papers appearing in refereed journals
Cao, X., Luo, Y., Zhou, Y., Fan, J., Xu, X., West, J. S., Duan, X. and Cheng, D. 2015. Detection of powdery mildew in two winter wheat plant densities and prediction of grain yield using canopy hyperspectral reflectance. PLOS ONE. 10, p. e0121462. https://doi.org/10.1371/journal.pone.0121462

Plant virus particles carrying tumour antigen activate TLR7 and induce high levels of protective antibody

A - Papers appearing in refereed journals
Jobsri, J., Allen, A., Rajagopal, D., Shipton, M., Kanyuka, K., Lomonossoff, G. P., Ottensmeier, C., Diebold, S. S., Stevenson, F. K. and Savelyeva, N. 2015. Plant virus particles carrying tumour antigen activate TLR7 and induce high levels of protective antibody. PLOS ONE. 10, p. e0118096. https://doi.org/10.1371/journal.pone.0118096

Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation

A - Papers appearing in refereed journals
Chakraborty, N., Sharma, P., Kanyuka, K., Pathak, R. R., Choudhury, D., Hooley, R. A. and Raghuram, N. 2015. Transcriptome analysis of Arabidopsis GCR1 mutant reveals its roles in stress, hormones, secondary metabolism and phosphate starvation. PLOS ONE. 10, p. e0117819. https://doi.org/10.1371/journal.pone.0117819

Cereal Aphid Colony Turnover and Persistence in Winter Wheat

A - Papers appearing in refereed journals
Winder, L., Alexander, C. J., Woolley, C., Perry, J. N. and Holland, J. M. 2014. Cereal Aphid Colony Turnover and Persistence in Winter Wheat. PLOS ONE. 9 (9). https://doi.org/10.1371/journal.pone.0106822

Traditional vs modern: role of breed type in determining enteric methane emissions from cattle grazing as part of contrasting grassland-based systems

A - Papers appearing in refereed journals
Fraser, M. D., Fleming, H. R. and Moorby, J. M. 2014. Traditional vs modern: role of breed type in determining enteric methane emissions from cattle grazing as part of contrasting grassland-based systems. PLOS ONE. 9, p. e107861. https://doi.org/10.1371/journal.pone.0107861

Plant volatile analogues strengthen attractiveness to insect

A - Papers appearing in refereed journals
Sun, Y., Yu, H., Zhou, J-J., Pickett, J. A. and Wu, K-M. 2014. Plant volatile analogues strengthen attractiveness to insect. PLOS ONE. 9, p. e99142. https://doi.org/10.1371/journal.pone.0099142

An individual-based model of the evolution of pesticide resistance in heterogeneous environments: control of Meligethes aeneus population in oilseed rape crops

A - Papers appearing in refereed journals
Stratonovitch, P., Elias, J., Denholm, I., Slater, R. and Semenov, M. A. 2014. An individual-based model of the evolution of pesticide resistance in heterogeneous environments: control of Meligethes aeneus population in oilseed rape crops. PLOS ONE. 9, p. e115631. https://doi.org/10.1371/journal.pone.0115631

Gene expression in plant lipid metabolism in Arabidopsis seedlings

A - Papers appearing in refereed journals
Hsiao, A-S., Haslam, R. P., Michaelson, L. V., Liao, P., Napier, J. A. and Chye, M-L. 2014. Gene expression in plant lipid metabolism in Arabidopsis seedlings. PLOS ONE. 9, p. e107372. https://doi.org/10.1371/journal.pone.0107372

Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development

A - Papers appearing in refereed journals
Chueasiri, C., Chunthong, K., Pitnjam, K., Chakhonkaen, S., Sangarwut, N., Sangsawang, K., Suksangpanomrung, M., Michaelson, L. V., Napier, J. A. and Muangprom, A. 2014. Rice ORMDL controls sphingolipid homeostasis affecting fertility resulting from abnormal pollen development. PLOS ONE. 9, p. e106386. https://doi.org/10.1371/journal.pone.0106386

Discovering study-specific gene regulatory networks

A - Papers appearing in refereed journals
Bo, V., Curtis, T., Lysenko, A., Saqi, M., Swift, S. and Tucker, A. 2014. Discovering study-specific gene regulatory networks. PLOS ONE. 9, p. e106524. https://doi.org/10.1371/journal.pone.0106524

Systems responses to progressive water stress in durum wheat

A - Papers appearing in refereed journals
Habash, D. Z., Baudo, M., Hindle, M. M., Powers, S. J., Defoin-Platel, M., Mitchell, R. A. C., Saqi, M., Rawlings, C. J., Latiri, K., Araus, J. L., Abdulkader, A., Tuberosa, R., Lawlor, D. W. and Nachit, M. M. 2014. Systems responses to progressive water stress in durum wheat. PLOS ONE. 9, p. e108431. https://doi.org/10.1371/journal.pone.0108431

Effect of breadmaking process on In vitro gut microbiota parameters in irritable bowel syndrome

A - Papers appearing in refereed journals
Costabile, A., Santarelli, S., Claus, S. P., Sanderson, J., Hudspith, B. N., Brostoff, J., Ward, J. L., Lovegrove, A., Shewry, P. R., Jones, H. E., Whitley, A. M. and Gibson, G. R. 2014. Effect of breadmaking process on In vitro gut microbiota parameters in irritable bowel syndrome. PLOS ONE. 9, p. e111225. https://doi.org/10.1371/journal.pone.0111225

Genome wide association mapping of grain arsenic, copper, molybdenum and zinc in rice (Oryza sativa L.) grown at four international field sites

A - Papers appearing in refereed journals
Norton, G. J., Douglas, A., Lahner, B., Yakubova, E., Guerinot, M. L., Pinson, S. R. M., Tarpley, L., Eizenga, G. C., McGrath, S. P., Zhao, F-J., Islam, M. R., Islam, S., Duan, G., Zhu, Y., Salt, D. E., Meharg, A. A. and Price, A. H. 2014. Genome wide association mapping of grain arsenic, copper, molybdenum and zinc in rice (Oryza sativa L.) grown at four international field sites. PLOS ONE. 9, p. e89685. https://doi.org/10.1371/journal.pone.0089685

Assessing quantitative resistance against Leptosphaeria maculans (phoma stem canker) in Brassica napus (oilseed rape) in young plants

A - Papers appearing in refereed journals
Huang, Y-J., Qi, A., King, G. J. and Fitt, B. D. L. 2014. Assessing quantitative resistance against Leptosphaeria maculans (phoma stem canker) in Brassica napus (oilseed rape) in young plants. PLOS ONE. 9, p. e84924. https://doi.org/10.1371/journal.pone.0084924

So near and yet so far: harmonic radar reveals reduced homing ability of Nosema infected honeybees

A - Papers appearing in refereed journals
Wolf, S., McMahon, D. P., Lim, K. S., Pull, C. D., Clark, S. J., Paxton, R. J. and Osborne, J. L. 2014. So near and yet so far: harmonic radar reveals reduced homing ability of Nosema infected honeybees. PLOS ONE. 9, p. e103989. https://doi.org/10.1371/journal.pone.0103989

Molecular characterization and differential expression of olfactory genes in the antennae of the black cutworm moth Agrotis ipsilon

A - Papers appearing in refereed journals
Gu, S-H., Sun, L., Yang, R-N., Wu, K-M., Guo, Y-Y., Li, X-C., Zhou, J-J. and Zhang, Y-J. 2014. Molecular characterization and differential expression of olfactory genes in the antennae of the black cutworm moth Agrotis ipsilon. PLOS ONE. 9, p. e103420. https://doi.org/10.1371/journal.pone.0103420

Distribution and frequency of kdr mutations within Anopheles gambiae s.l. populations and first report of the Ace.1 G119S mutation in Anopheles arabiensis from Burkina Faso (West Africa)

A - Papers appearing in refereed journals
Dabire, R. K., Namountougou, M., Diabate, A., Soma, D. D., Bado, J., Toe, H. K., Bass, C. and Combary, P. 2014. Distribution and frequency of kdr mutations within Anopheles gambiae s.l. populations and first report of the Ace.1 G119S mutation in Anopheles arabiensis from Burkina Faso (West Africa). PLOS ONE. 9, p. e101484. https://doi.org/10.1371/journal.pone.0101484

A process-based approach to predicting the effect of climate change on the distribution of an invasive allergenic plant in Europe

A - Papers appearing in refereed journals
Storkey, J., Stratonovitch, P., Chapman, D. S., Vidotto, F. and Semenov, M. A. 2014. A process-based approach to predicting the effect of climate change on the distribution of an invasive allergenic plant in Europe. PLOS ONE. 9, p. e88156. https://doi.org/10.1371/journal.pone.0088156

Sniffing out chemosensory genes from the Mediterranean fruit fly, Ceratitis capitata

A - Papers appearing in refereed journals
Siciliano, P., Scolari, F., Gomulski, L. M., Falchetto, M., Manni, M., Gabrieli, P., Field, L. M., Zhou, J-J., Gasperi, G. and Malacrida, A. R. 2014. Sniffing out chemosensory genes from the Mediterranean fruit fly, Ceratitis capitata. PLOS ONE. 9, p. e85523. https://doi.org/10.1371/journal.pone.0085523

The emergence of resistance to fungicides

A - Papers appearing in refereed journals
Hobbelen, P. H. F., Paveley, N. D. and Van Den Bosch, F. 2014. The emergence of resistance to fungicides. PLOS ONE. 9, p. e91910. https://doi.org/10.1371/journal.pone.0091910

Oviposition site-selection by Bactrocera dorsalis is mediated through an innate recognition template tuned to gamma-octalactone

A - Papers appearing in refereed journals
Damodaram, K. J. P., Kempraj, V., Aurade, R. M., Venkataramanappa, R. K., Nandagopal, B., Verghese, A. and Bruce, T. J. A. 2014. Oviposition site-selection by Bactrocera dorsalis is mediated through an innate recognition template tuned to gamma-octalactone. PLOS ONE. 9, p. e85764. https://doi.org/10.1371/journal.pone.0085764

Bacteria and fungi respond differently to multifactorial climate change in a temperate heathland, traced with 13C-glycine and FACE CO2

A - Papers appearing in refereed journals
Andresen, L. C., Dungait, J. A. J., Bol, R., Selsted, M. B., Ambus, P. and Michelsen, A. 2014. Bacteria and fungi respond differently to multifactorial climate change in a temperate heathland, traced with 13C-glycine and FACE CO2. PLOS ONE. 9, p. e85070. https://doi.org/10.1371/journal.pone.0085070