BCP: Surveillance and Monitoring
| Title | BCP: Surveillance and Monitoring |
|---|---|
| Type | Research cluster |
Outputs
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Improved Extraction Methods to Isolate High Molecular Weight DNA From Magnaporthaceae and Other Grass Root Fungi for Long-Read Whole Genome Sequencing
A - Papers appearing in refereed journals
Grey, M. J., Freeman, J., Rudd, J. J., Irish, N., Canning, G., Chancellor, T., Palma-Guerrero, J., Hill, R., Hall, N., Hammond-Kosack, K. E. and McMullan, M. 2025. Improved Extraction Methods to Isolate High Molecular Weight DNA From Magnaporthaceae and Other Grass Root Fungi for Long-Read Whole Genome Sequencing. Bio-protocol. 15 (6), p. e5245. https://doi.org/10.21769/BioProtoc.5245
Microfluidics for the biological analysis of atmospheric ice-nucleating particles: Perspectives and challenges
A - Papers appearing in refereed journals
Tarn, M. D., Shaw, K. J., Foster, P. B., West, J. S., Johnston, I. D., McCluskey, D. K., Peyman, S. A. and Murray, B. J. 2025. Microfluidics for the biological analysis of atmospheric ice-nucleating particles: Perspectives and challenges. Biomicrofluidics. 19 (1), p. 011502. https://doi.org/10.1063/5.0236911
An agent-based model of farmer decision making: Application to shared water resources in Arid and semi-arid regions
A - Papers appearing in refereed journals
El-Fartassi, I., Milne, A. E., Metcalfe, H., El Alami, R., Diarra, A., Alonso Chavez, V., Zawadzka, J., Waine, T. W. and Constanje, R. 2025. An agent-based model of farmer decision making: Application to shared water resources in Arid and semi-arid regions. Agricultural Water Management. 310 (April), p. 109357. https://doi.org/10.1016/j.agwat.2025.109357
Colletotrichum species associated with durian (Durio zibethinus Murray) in Hainan, China
A - Papers appearing in refereed journals
Xu, H., Zhang, Z., Zhou, Z., West, J. S., Wang, J. and Cao, X. 2025. Colletotrichum species associated with durian (Durio zibethinus Murray) in Hainan, China. Crop Protection. 188 (February), p. 107034. https://doi.org/10.1016/j.cropro.2024.107034
Early detection strategies for invading tree pests: Targeted surveillance and stakeholder perspectives
A - Papers appearing in refereed journals
Alonso Chavez, V., Brown, N., Van Den Bosch, F., Parnell, S., Dyke, A., Hall, C., Karlsdottir, B., Marzano, M., Morris, J., O’Brien, L., Williams, D. and Milne, A. E. 2025. Early detection strategies for invading tree pests: Targeted surveillance and stakeholder perspectives. Journal of Applied Ecology. pp. 1-15. https://doi.org/10.1111/1365-2664.70009
Starship giant transposable elements cluster by host taxonomy using kmer-based phylogenetics
A - Papers appearing in refereed journals
Hill, R., Smith, D., Canning, G., Grey, M., Hammond-Kosack, K. E. and McMullan, M. 2025. Starship giant transposable elements cluster by host taxonomy using kmer-based phylogenetics. G3: Genes, Genomes, Genetics. p. JKAF082. https://doi.org/10.1093/g3journal/jkaf082
Evolutionary genomics reveals variation in structure and genetic content implicated in virulence and lifestyle in the genus Gaeumannomyces
A - Papers appearing in refereed journals
Hammond-Kosack, K. E., Hill, R., Grey, M., Fedi, M. O., Smith, D. P., Ward, S. J., Canning, G., Irish, N., Smith, J., Mcmillan, V. E., Hammond, J., Osborne, S., Chancellor, T., Swarbreck, D., Hall, N., Palma-Guerrero, J. and McMullan, M. 2025. Evolutionary genomics reveals variation in structure and genetic content implicated in virulence and lifestyle in the genus Gaeumannomyces. BMC Genomics. 26, p. 239. https://doi.org/10.1186/s12864-025-11432-0
Identifying insect predators using camera traps reveal unexpected predator communities in oilseed rape fields
A - Papers appearing in refereed journals
Seimandi-Corda, G., Hood, T., Hampson, M., Jenkins, T., Blumgart, D., Hall, J., Jowett, K., Hoye, T. T. and Cook, S. M. 2024. Identifying insect predators using camera traps reveal unexpected predator communities in oilseed rape fields. Biological Control. 198, p. 105636. https://doi.org/10.1016/j.biocontrol.2024.105636
Development and application of a qPCR-based method coupled with spore trapping to monitor airborne pathogens of wheat causing stripe rust, powdery mildew, and Fusarium head blight
A - Papers appearing in refereed journals
A, Wang, Z, Shang, R, Jiang, M, Zhang, J, Wang, H, Li, B, Zhang, H, Tang, F, Xu, X, Hu, W, Liu, J, Fan, Y, Zhou and West, J. S. 2024. Development and application of a qPCR-based method coupled with spore trapping to monitor airborne pathogens of wheat causing stripe rust, powdery mildew, and Fusarium head blight. Plant Disease. https://doi.org/10.1094/PDIS-03-24-0548-SR
Validating a cassava production spatial disaggregation model in sub-Saharan Africa
A - Papers appearing in refereed journals
Hassall, K. L., Alonso Chavez, V., Sint, H. M., Helps, J., Abidrabo, P., Okao-Okuja, G., Eboulem, R. G., Amoakon, W. J., Otron, D. H. and Szyniszewska, A. 2024. Validating a cassava production spatial disaggregation model in sub-Saharan Africa. PLOS ONE. https://doi.org/10.1371/journal.pone.0312734
Prey nutrient content is associated with the trophic interactions of spiders and their prey selection under field conditions
A - Papers appearing in refereed journals
Cuff, J. P., Tercel, M. P. T. G., Vaughan, I. P., Drake, L. E., Wilder, S. M., Bell, J. R., Muller, C. T., Wengel, P. O. and Symondson, W. O. C. 2024. Prey nutrient content is associated with the trophic interactions of spiders and their prey selection under field conditions. Oikos. p. e10712. https://doi.org/10.1111/oik.10712
A new species to Europe of East Asian aphid, Longicaudinus corydalisicola (Tao, 1962) (Aphidinae: Macrosiphini), recorded from Britain and Ireland
A - Papers appearing in refereed journals
Greenslade, A. F. C., Lester, L., Pichon, A., Alderson, L. J., Kruger, T., Martin, M., Gizycka, H., Garrett, D., Webb, H., Buchard, C. and Carnegie, M. 2024. A new species to Europe of East Asian aphid, Longicaudinus corydalisicola (Tao, 1962) (Aphidinae: Macrosiphini), recorded from Britain and Ireland. Zootaxa. 5523 (3), p. 396–398. https://doi.org/10.11646/zootaxa.5523.3.8
Identifying archived insect bulk samples using DNA metabarcoding: A case study using the long-term Rothamsted Insect Survey
A - Papers appearing in refereed journals
Petsopoulos, D., Cuff, J. P., Bell, J. R., Kitson, J. J. N., Collins, L., Boonham, N., Morales-Hojas, R. and Evans, D. M. 2024. Identifying archived insect bulk samples using DNA metabarcoding: A case study using the long-term Rothamsted Insect Survey. Environmental DNA. 6 (3), p. e542. https://doi.org/10.1002/edn3.542
Threeruns Carabid dataset
N - Datasets
Jowett, K., Milne, A. E., Garrett, D., Blumgart, D., Potts, S. G., Senapathi, D. and Storkey, J. 2024. Threeruns Carabid dataset. Rothamsted Research. https://doi.org/10.23637/rothamsted.990y0
Using a multi-scale approach to examine the effects of field margins and landscape features on predatory carabid communities in crop fields
A - Papers appearing in refereed journals
Jowett, K., Milne, A. E., Garrett, D., Blumgart, D., Potts, S. G., Senapathi, D. and Storkey, J. 2024. Using a multi-scale approach to examine the effects of field margins and landscape features on predatory carabid communities in crop fields . Agriculture, Ecosystems & Environment. 373 (1 October), p. 109115. https://doi.org/10.1016/j.agee.2024.109115
A fungal endophyte induces local cell wall-mediated resistance in wheat roots against take-all disease
A - Papers appearing in refereed journals
Chancellor, T., Smith, D. P., Chen, W., Clark, S. J., Venter, E., Halsey, K., Carrera, E., Mcmillan, V. E., Canning, G., Armer, V., Hammond-Kosack, K. E. and Palma-Guerrero, J. 2024. A fungal endophyte induces local cell wall-mediated resistance in wheat roots against take-all disease. Frontiers in Plant Science. 15, p. 1444271. https://doi.org/10.3389/fpls.2024.1444271
Phoma stem canker (blackleg) of oilseed rape (canola) and other Brassica crops
A - Papers appearing in refereed journals
West, J. S. and King, K. M. 2024. Phoma stem canker (blackleg) of oilseed rape (canola) and other Brassica crops. Plant Health Cases CABI Reviews. https://doi.org/10.1079/planthealthcases.2024.0007
A one health roadmap towards understanding and mitigating emerging Fungal Antimicrobial Resistance: fAMR
A - Papers appearing in refereed journals
Fisher, M. C., Burnett, F., Chandler, C., Gow, N. A. R., Gurr, S., Hart, A., Holmes, A., May, R. C., Quinn, J., Soliman, T., Talbot, N. J., West, H. M., West, J. S., White, P. L., Bromley, M. and Armstrong-James, D. 2024. A one health roadmap towards understanding and mitigating emerging Fungal Antimicrobial Resistance: fAMR. npj Antimicrobials and Resistance. 2, p. 36. https://doi.org/10.1038/s44259-024-00055-2
Swift manuscript dataset
N - Datasets
Romanowski, H., Shortall, C. R., Jowett, K. and Garrett, D. 2024. Swift manuscript dataset. Rothamsted Research. https://doi.org/10.23637/rothamsted.99011
MinION sequencing of fungi in Sub-Saharan African air, and a novel LAMP assay for rapid detection of the tropical phytopathogenic genus Lasiodiplodia
A - Papers appearing in refereed journals
King, K. M., Canning, G. and West, J. S. 2024. MinION sequencing of fungi in Sub-Saharan African air, and a novel LAMP assay for rapid detection of the tropical phytopathogenic genus Lasiodiplodia . Pathogens. 13 (4), p. 330. https://doi.org/10.3390/pathogens13040330
Implications and impacts of aligning regional agriculture with a healthy diet
A - Papers appearing in refereed journals
Sharp, R., Bellamy, A. S., Clear, A., Finnigan, S. M., Furness, E., Meador, E., Metcalfe, H., Mills, S., Coleman, K., Whitmore, A. P. and Milne, A. E. 2024. Implications and impacts of aligning regional agriculture with a healthy diet. Journal of Cleaner Production. 449, p. 141375. https://doi.org/10.1016/j.jclepro.2024.141375
Swift sampling of farmland aerial invertebrates offers insights into foraging behaviour in an aerial insectivore
A - Papers appearing in refereed journals
Romanowski, H., Shortall, C. R., Jowett, K. and Garrett, D. 2024. Swift sampling of farmland aerial invertebrates offers insights into foraging behaviour in an aerial insectivore. Wildlife Biology. p. e01294. https://doi.org/10.1002/wlb3.01294
Sources of prey availability data alter interpretation of outputs from prey choice null networks
A - Papers appearing in refereed journals
Cuff, J. P., Tercel, M. P. T. G., Windsor, F. M., Hawthorne, B. S. J., Hamback, P. A., Bell, J. R., Symondson, W. O. C. and Vaughan, I. P. 2024. Sources of prey availability data alter interpretation of outputs from prey choice null networks. Ecological Entomology. https://doi.org/10.1111/een.13315
Genome assembly and transcriptomic analysis to elucidate the ability of Nasonovia ribisnigri to break host plant resistance
A - Papers appearing in refereed journals
Garrett, D., Teakle, G., Collier, R., Bell, J., Cerezo-Medina, S. and Morales-Hojas, R. 2024. Genome assembly and transcriptomic analysis to elucidate the ability of Nasonovia ribisnigri to break host plant resistance. Insect Molecular Biology. pp. 1-18. https://doi.org/10.1111/imb.12894
Population Genetic Structure of the Rubber Tree Powdery Mildew Pathogen (Erysiphe quercicola) from China
A - Papers appearing in refereed journals
Cao, X., Han, Q., Xiao, Y., He, J., Chuan, X., Jiang, G., West, J. S. and Xu, X. 2024. Population Genetic Structure of the Rubber Tree Powdery Mildew Pathogen (Erysiphe quercicola) from China. Plant Disease. https://doi.org/10.1094/PDIS-03-23-0575-RE
Spray-induced gene silencing as a potential tool to control rubber tree powdery mildew disease
A - Papers appearing in refereed journals
Cao X., Han Q. and West, J. S. 2024. Spray-induced gene silencing as a potential tool to control rubber tree powdery mildew disease. Physiological and Molecular Plant Pathology. 129, p. 102182. https://doi.org/10.1016/j.pmpp.2023.102182
How aphids fly: take off, free flight and implications for short and long distance migration
A - Papers appearing in refereed journals
Bell, J. R. and Shephard, G. 2024. How aphids fly: take off, free flight and implications for short and long distance migration . Agricultural and Forest Entomology. p. afe.12623. https://doi.org/10.1111/afe.12623
Evolution of decreased sensitivity to azole fungicides in western European populations of Plenodomus lingam (cause of Phoma leaf spot / stem canker on oilseed rape)
A - Papers appearing in refereed journals
King, K. M., Barr, L., Bousquet, L., Glaab, A., Canning, G., Ritchie, F., Kildea, S., Fraaije, B. A. and West, J. S. 2024. Evolution of decreased sensitivity to azole fungicides in western European populations of Plenodomus lingam (cause of Phoma leaf spot / stem canker on oilseed rape). Plant Pathology. pp. 1-16. https://doi.org/10.1111/ppa.13897
Efficient qPCR estimation and discrimination of airborne inoculum of Leptosphaeria maculans and L. biglobosa, the causal organisms of phoma leaf spotting and stem canker of oilseed rape
A - Papers appearing in refereed journals
Kaczmarek, J., West, J. S., King, K. M., Canning, G., Latunde-Dada, A. O., Huang, Y-J., Fitt, B. D. L. and Jedryczka, M. 2024. Efficient qPCR estimation and discrimination of airborne inoculum of Leptosphaeria maculans and L. biglobosa, the causal organisms of phoma leaf spotting and stem canker of oilseed rape. Pest Management Science. 80 (5), pp. 2453-2460. https://doi.org/10.1002/ps.7800
Long‐term trends in migrating Brassicogethes aeneus in the UK
A - Papers appearing in refereed journals
Shortall, C. R., Cook, S. M., Mauchline, A. L. and Bell, J. R. 2024. Long‐term trends in migrating Brassicogethes aeneus in the UK. Pest Management Science. 80 (5), pp. 2294-2305. https://doi.org/10.1002/ps.7501
Effective control of Leptosphaeria maculans increases importance of L. biglobosa as a cause of phoma stem canker epidemics on oilseed rape
A - Papers appearing in refereed journals
Huang, Y-J., Sidique, S. N. M., Dewage, C. S. K., Gajula, L. H., Mitrousia, G. K., Qi, A., West, J. S. and Fitt, B. D. L. 2024. Effective control of Leptosphaeria maculans increases importance of L. biglobosa as a cause of phoma stem canker epidemics on oilseed rape. Pest Management Science. 80 (5), pp. 2405-2415. https://doi.org/10.1002/ps.7248
Characterization of Colletotrichum Species Infecting Litchi in Hainan, China
A - Papers appearing in refereed journals
Li, X. C., Xu, H., Li, H., Wang, S., Wang, G., West, J. S. and Wang, J. 2023. Characterization of Colletotrichum Species Infecting Litchi in Hainan, China. Journal of fungi. 9 (11), p. 1042. https://doi.org/10.3390/jof9111042
Trade-offs constrain the success of glyphosate-free farming.
A - Papers appearing in refereed journals
Metcalfe, H., Storkey, J., Hull, R. I., Bullock, J. M., Whitmore, A. P., Sharp, R. and Milne, A. E. 2023. Trade-offs constrain the success of glyphosate-free farming. Scientific Reports. 14, p. 8001. https://doi.org/10.1038/s41598-024-58183-8
Insights in disease management - Editorial
A - Papers appearing in refereed journals
West, J. S., Spadaro, D. and Hofte, M. 2023. Insights in disease management - Editorial. Frontiers in Agronomy. 5, p. 1155058. https://doi.org/10.3389/fagro.2023.1155058
Host map of Ash trees in Great Britain
N - Datasets
Brown, N., Alonso Chavez, V., Milne, A. E. and Parnell, S. 2023. Host map of Ash trees in Great Britain. Rothamsted Research. https://doi.org/10.23637/rothamsted.98y37
Temporal variation in spider trophic interactions is explained by the influence of weather on prey communities, web building and prey choice
A - Papers appearing in refereed journals
Cuff, J. P., Windsor, F. M., Tercel, M. P. T. G., Bell, J. R., Symondson, W. O. C. and Vaughan, I. P 2023. Temporal variation in spider trophic interactions is explained by the influence of weather on prey communities, web building and prey choice. Ecography. 7, p. e06737. https://doi.org/10.1111/ecog.06737
Promoting dietary changes for achieving health and sustainability targets
A - Papers appearing in refereed journals
Bellamy, A. S., Furness, E., Mills, S., Clear, A., Finnigan, S. M., Meador, J. E., Milne, A. E. and Sharp, R. T. 2023. Promoting dietary changes for achieving health and sustainability targets. Frontiers in Sustainable Food Systems. 7, p. 1160627. https://doi.org/10.3389/fsufs.2023.1160627
Aerobiology of the Wheat Blast Pathogen: Inoculum Monitoring and Detection of Fungicide Resistance Alleles
A - Papers appearing in refereed journals
Vicentini, S. N. C., Hawkins, N. J., King, K. M., Moreira, S. I., Custodio, A. A. D. P., Junior, R. P. L., Portalanza, D., Garces-Fiallos, F. R., Krug, L. D., West, J. S., Fraaije, B. A., Junior, W. C. D. J. and Ceresini, P. C. 2023. Aerobiology of the Wheat Blast Pathogen: Inoculum Monitoring and Detection of Fungicide Resistance Alleles. Agronomy. 13 (5), p. 1238. https://doi.org/10.3390/agronomy13051238
Temporal population structure of rubber tree powdery mildew pathogen Erysiphe quercicola in Hainan, China.
A - Papers appearing in refereed journals
Cao, X., Xiao, Y., Han, Q., West, J. S. and Daquan, L. 2023. Temporal population structure of rubber tree powdery mildew pathogen Erysiphe quercicola in Hainan, China. Plant Pathology. 72 (7), pp. 1218-1225. https://doi.org/10.1111/ppa.13736
Explainable neural networks for trait-based multispecies distribution modelling—A case study with butterflies and moths
A - Papers appearing in refereed journals
Bourhis, Y., Bell, J. R., Shortall, C. R., Kunin, W. and Milne, A. E. 2023. Explainable neural networks for trait-based multispecies distribution modelling—A case study with butterflies and moths. Methods in ecology and evolution. 14 (6), pp. 1531-1542. https://doi.org/10.1111/2041-210X.14097