CAS: Statistics and Ecoinformatics
| Title | CAS: Statistics and Ecoinformatics |
|---|---|
| Type | Research cluster |
Outputs
Sort by: Date Title
The impact of weather and increased atmospheric CO2 from 1892 to 2016 on simulated yields of UK wheat
A - Papers appearing in refereed journals
Addy, J. W. G., Ellis, R.H., Macdonald, A. J., Semenov, M. A. and Mead, A. 2021. The impact of weather and increased atmospheric CO2 from 1892 to 2016 on simulated yields of UK wheat. Journal of the Royal Society Interface. 18 (179), p. 20210250. https://doi.org/10.1098/rsif.2021.0250
Resolving the identification of weak-flying insects during flight: a coupling between rigorous data processing and biology
A - Papers appearing in refereed journals
Hassall, K. L., Dye, A., Potamitis, I and Bell, J. R. 2021. Resolving the identification of weak-flying insects during flight: a coupling between rigorous data processing and biology. Agricultural and Forest Entomology. https://doi.org/10.1111/afe.12453
Wheat amino acid transporters highly expressed in grain cells regulate amino acid accumulation in grain
A - Papers appearing in refereed journals
Wan, Y., Wang, Y., Shi, Z., Rentsch, D., Ward, J. L., Hassall, K. L., Sparks, C. A., Huttly, A. K., Buchner, P. H., Powers, S. J., Shewry, P. R. and Hawkesford, M. J. 2021. Wheat amino acid transporters highly expressed in grain cells regulate amino acid accumulation in grain. PLOS ONE. 16 (2), p. e0246763. https://doi.org/10.1371/journal.pone.0246763
Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorus acquisition in plants
A - Papers appearing in refereed journals
Mezeli, M. M., Page, S., George, T. S., Neilson, R., Mead, A., Blackwell, M. S. A. and Haygarth, P. M. 2020. Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorus acquisition in plants. Soil Biology and Biochemistry. 142, p. 107695. https://doi.org/10.1016/j.soilbio.2019.107695
Data Study Group Network Final Report: Rothamsted Research
A - Papers appearing in refereed journals
Breure, T., Carmona, C. U., Ellisck, S., Evans, B., Fahmi, A., Haefele, S. M., Hassall, K. L., Loning, M., Ruiz, D. P., Shchepanovska, D. and Thomas, C. L. 2020. Data Study Group Network Final Report: Rothamsted Research. Data Study Group Network Final Report: Rothamsted Research. Zenodo. https://doi.org/10.5281/zenodo.3775489
Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorous acquisition in plants
A - Papers appearing in refereed journals
Mezeli, M. M., Page, S., George, T. S., Neilson, R., Mead, A., Blackwell, M. S. A. and Haygarth, P. M. 2020. Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorous acquisition in plants. Soil Biology and Biochemistry. 142, p. 107695. https://doi.org/10.1016/j/soilbio.2019.107695
The contribution of fiber components to water absorption of wheat grown in the UK
A - Papers appearing in refereed journals
Lovegrove, A., Wood, A., Hassall, K. L., Howes, L., Poole, M, Tosie, P. and Shewry, P. R. 2020. The contribution of fiber components to water absorption of wheat grown in the UK. Cereal chemistry. 97 (5), pp. 940-948. https://doi.org/10.1002/cche.10316
Extracted features from opto-acoustic audio recordings of aphids and beetles
N - Datasets
Hassall, K. L., Dye, A. and Bell, J. R. 2020. Extracted features from opto-acoustic audio recordings of aphids and beetles. Rothamsted Research. https://doi.org/10.23637/rothamsted.981w8
Opto-acoustic audio recordings of aphids and beetles
N - Datasets
Hassall, K. L., Dye, A. and Bell, J. R. 2020. Opto-acoustic audio recordings of aphids and beetles. Rothamsted Research. https://doi.org/10.23637/rothamsted.981w7
Do modern types of wheat have lower quality for human health?
A - Papers appearing in refereed journals
Shewry, P. R., Hassall, K. L., Grausgruber, H., Andersson, A., Lampi, A-M., Piironen, V., Ward, J. L. and Lovegrove, A. 2020. Do modern types of wheat have lower quality for human health? Nutrition Bulletin. 45 (4), pp. 362-373. https://doi.org/10.1111/nbu.12461
Characterisation of bird cherry-oat aphid (Rhopalosiphum padi L.) behaviour and aphid host preference in relation to partially resistant and susceptible wheat landraces
A - Papers appearing in refereed journals
Singh, B., Simon, A. L., Halsey, K., Kurup, S., Clark, S. J. and Aradottir, G. I. 2020. Characterisation of bird cherry-oat aphid (Rhopalosiphum padi L.) behaviour and aphid host preference in relation to partially resistant and susceptible wheat landraces. Annals of Applied Biology - AAB. 177 (2), pp. 184-194. https://doi.org/10.1111/aab.12616
Book review for Model-based Geostatistics in global public health
G - Articles in popular magazines and other technical publications
Hassall, K. L. 2020. Book review for Model-based Geostatistics in global public health. Biometrical Journal. https://doi.org/10.1002/bimj.202000175
Low protein wheat for bread making
D1 - Technical reports: non-confidential
Shewry, P. R., Wood, A. J., Hassall, K. L., Pellny, T. K., Riche, A. B., Hussain, A., Hawkesford, M. J., Griffiths, S., Penson, S., Tucker, G. and Baker, C. 2020. Low protein wheat for bread making. Agriculture and Horticulture Development Board.
Genetic variation in wheat grain quality is associated with differences in the galactolipid content of flour and the gas bubble properties of dough liquor
A - Papers appearing in refereed journals
Min, B., Salt, L., Wilde, P., Kosik, O., Hassall, K. L., Przewieslik-Allen, A., Burridge, A. J., Poole, M., Snape, J., Wingen, L., Haslam, R. P., Griffiths, S. and Shewry, P. R. 2020. Genetic variation in wheat grain quality is associated with differences in the galactolipid content of flour and the gas bubble properties of dough liquor. Food Chemistry. 60, p. 100093. https://doi.org/10.1016/j.fochx.2020.100093
Long-term agricultural research at Rothamsted
B - Book chapters etc edited externally
Macdonald, A. J., Poulton, P. R., Glendining, M. J. and Powlson, D. S. 2020. Long-term agricultural research at Rothamsted. in: Bhullar, G.S. and Riar, A. (ed.) Long-term Farming Systems Research - Ensuring Food Security in Changing Scenarios Academic Press Inc Elsevier Science. pp. 15-33
Overexpression of an endogenous type 2 diacylglycerol acyltransferase in the marine diatom Phaeodactylum tricornutum enhances lipid production and omega-3 long-chain polyunsaturated fatty acid content
A - Papers appearing in refereed journals
Haslam, R. P., Hamilton, M. L., Economou, C., Smith, Richard T., Hassall, K. L., Napier, J. A. and Sayanova, O. V. 2020. Overexpression of an endogenous type 2 diacylglycerol acyltransferase in the marine diatom Phaeodactylum tricornutum enhances lipid production and omega-3 long-chain polyunsaturated fatty acid content . Biotechnology for Biofuels. 13 (87). https://doi.org/10.1186/s13068-020-01726-8
Visiting dark sides of model simulation of carbon stocks in European temperate agricultural soils: allometric function and model initialization
A - Papers appearing in refereed journals
Taghizadeh-Toosi, A., Cong, W-F., Eriksen, J., Mayer, J., Olesen, J. E., Keel, S. G., Glendining, M. J., Katterer, T. and Christensen, B. T. 2020. Visiting dark sides of model simulation of carbon stocks in European temperate agricultural soils: allometric function and model initialization. Plant and Soil. 450, pp. 255-272. https://doi.org/10.1007/s11104-020-04500-9
High level accumulation of EPA and DHA in field-grown transgenic Camelina – a multi-territory evaluation of TAG accumulation and heterogeneity
A - Papers appearing in refereed journals
Han, L., Usher, S. L., Sandgrind, S., Hassall, K. L., Sayanova, O. V., Michaelson, L. V., Haslam, R. P. and Napier, J. A. 2020. High level accumulation of EPA and DHA in field-grown transgenic Camelina – a multi-territory evaluation of TAG accumulation and heterogeneity . Plant Biotechnology Journal. 18 (11), pp. 2280-2291. https://doi.org/10.1111/pbi.13385
Covid-19: dogma over potential for prolonged droplet dispersal in air
A - Papers appearing in refereed journals
West, J. S. and Perryman, S. A. M. 2020. Covid-19: dogma over potential for prolonged droplet dispersal in air. Frontiers in public health. 8, p. 551836. https://doi.org/10.3389/fpubh.2020.551836
Historical changes in the contents and compositions of fibre components and polar metabolites in white wheat flour
A - Papers appearing in refereed journals
Lovegrove, A., Pellny, T. K., Hassall, K. L., Plummer, A., Wood, A., Bellisai, A., Przewieslik-Allen, A., Burridge, A. J., Ward, J. L. and Shewry, P. R. 2020. Historical changes in the contents and compositions of fibre components and polar metabolites in white wheat flour. Scientific Reports. 10, p. 5920. https://doi.org/10.1038/s41598-020-62777-3
Functional QTL mapping and genomic prediction of canopy height in wheat measured using a robotic field phenotyping platform
A - Papers appearing in refereed journals
Lyra, D. H., Virlet, N., Sadeghi-Tehran, P., Hassall, K. L., Wingen, L. U., Orford, S., Griffiths, S., Hawkesford, M. J. and Slavov, G. 2020. Functional QTL mapping and genomic prediction of canopy height in wheat measured using a robotic field phenotyping platform . Journal of Experimental Botany. p. erz545. https://doi.org/10.1093/jxb/erz545
The effects of cropping sequence, fertilization, and straw management on the yield stability of winter wheat (1986–2017) in the Broadbalk Wheat Experiment, Rothamsted, UK.
A - Papers appearing in refereed journals
Macholdt, J., Piepho, H-P., Honermeier, B., Perryman, S. A. M., Macdonald, A. J. and Poulton, P. R. 2020. The effects of cropping sequence, fertilization, and straw management on the yield stability of winter wheat (1986–2017) in the Broadbalk Wheat Experiment, Rothamsted, UK. The Journal of Agricultural Science. 158 (1-2), pp. 65-79. https://doi.org/10.1017/S0021859620000301
Identification of a major QTL and associated molecular marker for high arabinoxylan fibre in white wheat flour
A - Papers appearing in refereed journals
Lovegrove, A., Wingen, L. U., Plummer, A., Wood, A., Passmore, D., Kosik, O., Freeman, J., Mitchell, R. A. C., Hassall, K. L., Ulker, M., Tremmel-Bede, K., Rakszegi, M., Bedo, Z., Perretant, M-R., Charmet, G., Pont, C., Salse, J., Leverington Waite, M., Orford, S., Burridge, A., Pellny, T. K., Shewry, P. R. and Griffiths, S. 2020. Identification of a major QTL and associated molecular marker for high arabinoxylan fibre in white wheat flour. PLOS ONE. 15 (2), p. e0227826. https://doi.org/10.1371/journal.pone.0227826
Investigating the effects of inter-annual weather variation (1968-2016) on the functional response of cereal grain yield to applied nitrogen, using data from the Rothamsted Long-Term Experiments
A - Papers appearing in refereed journals
Addy, J., Ellis, R. H., Macdonald, A. J., Semenov, M. A. and Mead, A. 2020. Investigating the effects of inter-annual weather variation (1968-2016) on the functional response of cereal grain yield to applied nitrogen, using data from the Rothamsted Long-Term Experiments. Agricultural and Forest Meteorology. 284, p. 107898. https://doi.org/10.1016/j.agrformet.2019.107898
Changes of oxygen isotope values of soil P pools associated with changes in soil pH
A - Papers appearing in refereed journals
Pfahler, V., Macdonald, A. J., Mead, A., Smith, A. C., Tamburini, F., Blackwell, M. S. A. and Granger, S. J. 2020. Changes of oxygen isotope values of soil P pools associated with changes in soil pH. Scientific Reports. 10 (2065). https://doi.org/10.1038/s41598-020-59103-2
Species matter when considering landscape effects on carabid distributions
A - Papers appearing in refereed journals
Jowett, K., Milne, A. E., Metcalfe, H., Hassall, K. L., Potts, S. G., Senapathi, D. and Storkey, J. 2019. Species matter when considering landscape effects on carabid distributions. Agriculture, Ecosystems & Environment. 285 (2019), p. 106631. https://doi.org/10.1016/j.agee.2019.106631
Insights into Pasteurellaceae carriage dynamics in the nasal passages of healthy beef calves
A - Papers appearing in refereed journals
Lee, M. R. F., Bailey, M., Mead, A., Morales-Aza, B., Reynolds, R., Vipond, B., Finn, A., Eisler, M.C. and Thomas, A.C. 2019. Insights into Pasteurellaceae carriage dynamics in the nasal passages of healthy beef calves. Scientific Reports. 9 (11943), p. 11943. https://doi.org/10.1038/s41598-019-48007-5
Gradients of Gluten Proteins and Free Amino Acids along the Longitudinal Axis of the Developing Caryopsis of Bread Wheat
A - Papers appearing in refereed journals
Shi, Z., Wang, Y., Wan, Y., Hassall, K. L., Jiang, D., Shewry, P. R. and Hawkesford, M. J. 2019. Gradients of Gluten Proteins and Free Amino Acids along the Longitudinal Axis of the Developing Caryopsis of Bread Wheat . Journal of Agricultural and Food Chemistry - JAFC. 67 (31), pp. 8706-8714. https://doi.org/10.1021/acs.jafc.9b02728
The contribution of spatial mass effects to plant diversity in arable fields
A - Papers appearing in refereed journals
Metcalfe, H., Hassall, K. L., Boinot, S. and Storkey, J. 2019. The contribution of spatial mass effects to plant diversity in arable fields . Journal of Applied Ecology. 56 (3), pp. 1-15. https://doi.org/10.1111/1365-2664.13414
Effects of soybean oil supplements to diets of lactating dairy cows, on productive performance, and milk fat acids profile: a meta-analysis
A - Papers appearing in refereed journals
Mahdavi, A., Mahdavi, A., Darabighane, B., Mead, A. and Lee, M. R. F. 2019. Effects of soybean oil supplements to diets of lactating dairy cows, on productive performance, and milk fat acids profile: a meta-analysis. Italian Journal of Animal Science. https://doi.org/10.1080/1828051X.2019.1585211
Yield responses of arable crops to liming - An evaluation of relationships between yields and soil pH from a long-term liming experiment
A - Papers appearing in refereed journals
Holland, J. E., White, P. J., Glendining, M. J., Goulding, K. W. T. and McGrath, S. P. 2019. Yield responses of arable crops to liming - An evaluation of relationships between yields and soil pH from a long-term liming experiment. European Journal of Agronomy. 105 (April), pp. 176-188. https://doi.org/10.1016/j.eja.2019.02.016
ACE: Application for Conditional probability Elicitation
J - Computer programs
Hassall, K. L. 2019. ACE: Application for Conditional probability Elicitation. GitHub Rothamsted Research. https://doi.org/10.5281/zenodo.2563239
Facilitating the elicitation of beliefs for use in Bayesian Belief modelling
A - Papers appearing in refereed journals
Hassall, K. L., Dailey, A. G., Zawadzka, J., Milne, A. E., Harris, J. A., Corstanje, R. and Whitmore, A. P. 2019. Facilitating the elicitation of beliefs for use in Bayesian Belief modelling. Environmental Modelling and Software. 122, p. 104539. https://doi.org/10.1016/j.envsoft.2019.104539
Accounting for data sparsity when forming spatially coherent zones
A - Papers appearing in refereed journals
Hassall, K. L., Whitmore, A. P. and Milne, A. E. 2019. Accounting for data sparsity when forming spatially coherent zones. Applied Mathematical Modelling. 72 (August), pp. 537-552. https://doi.org/10.1016/j.apm.2019.03.030
Calcium Exerts a Strong Influence upon Phosphohydrolase Gene Abundance and Phylogenetic Diversity in Soil
A - Papers appearing in refereed journals
Neal, A. L. and Glendining, M. L. 2019. Calcium Exerts a Strong Influence upon Phosphohydrolase Gene Abundance and Phylogenetic Diversity in Soil. Soil Biology and Biochemistry. 139 (December), p. 107613. https://doi.org/10.1016/j.soilbio.2019.107613
Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive
E - Books edited/written by staff member, alone/with others
Macdonald, A. J., Poulton, P. R., Clark, I. M., Scott, T., Glendining, M. J., Perryman, S. A. M., Storkey, J., Bell, J. R., Shield, I. F., Mcmillan, V. E. and Hawkins, J. M. B. Macdonald, A. J. (ed.) 2018. Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive. Rothamsted Research, Harpenden.
Loop-mediated isothermal amplification (LAMP) assays for rapid detection of Pyrenopeziza brassicae (light leaf spot of brassicas)
A - Papers appearing in refereed journals
King, K. M., Krivova, V., Canning, G. G. M., Hawkins, N. J., Kaczmarek, A. M., Perryman, S. A. M., Dyer, P. S., Fraaije, B. A. and West, J. S. 2018. Loop-mediated isothermal amplification (LAMP) assays for rapid detection of Pyrenopeziza brassicae (light leaf spot of brassicas). Plant Pathology. 67 (1), pp. 167-174. https://doi.org/10.1111/ppa.12717
Genetic interactions between ABA signalling and the Arg/N-end rule pathway during Arabidopsis seedling establishment
A - Papers appearing in refereed journals
Zhang, H., Gannon, L., Jones, P. D., Rundle, C. A., Hassall, K. L., Gibbs, D. J., Holdsworth, M. J. and Theodoulou, F. L. 2018. Genetic interactions between ABA signalling and the Arg/N-end rule pathway during Arabidopsis seedling establishment. Scientific Reports. 8, p. 15192. https://doi.org/10.1038/s41598-018-33630-5
New insights in the composition of wax and sterol esters in common and mutant sunflower oils revealed by ESI-MS/MS
A - Papers appearing in refereed journals
Broughton, R., Ruíz-Lopez, N., Hassall, K. L., Martínez-Force, E., Garcés, R., Salas, J. J. and Beaudoin, F. 2018. New insights in the composition of wax and sterol esters in common and mutant sunflower oils revealed by ESI-MS/MS. Food Chemistry. 269, pp. 70-79. https://doi.org/10.1016/j.foodchem.2018.06.135
Hyperspectral measurements of yellow rust and fusarium head blight in cereal crops: Part 1: Laboratory study
A - Papers appearing in refereed journals
Whetton, R. L., Hassall, K. L., Waine, T. W. and Mouazen, A. M. 2018. Hyperspectral measurements of yellow rust and fusarium head blight in cereal crops: Part 1: Laboratory study. Biosystems Engineering. 166, pp. 101-115. https://doi.org/10.1016/j.biosystemseng.2017.11.008