PS: Resilience and Development

Title	PS: Resilience and Development
Type	Research cluster

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Loss-of-function mutation of EIN2 in Arabidopsis exaggerates oxidative stress induced by salinity

A - Papers appearing in refereed journals

Lin, Y., Chen, D., Paul, M. J., Zu, Y. and Tang, Z. 2013. Loss-of-function mutation of EIN2 in Arabidopsis exaggerates oxidative stress induced by salinity. Acta physiologiae plantarum. 35, pp. 1319-1328. https://doi.org/10.1007/s11738-012-1172-y

Regulation of growth by sugars through the T6P/SnRK1 signalling pathway

C2 - Non-edited contributions to conferences

Nunes, C., Primavesi, L. F., Delatte, T. L., Schluepmann, H., Somsen, G. W., Fevereiro, P. S., Wingler, A. and Paul, M. J. 2012. Regulation of growth by sugars through the T6P/SnRK1 signalling pathway. Abstracts SEB Annual Main Meeting, Salzburg, 29 June - 2 July 2012 . pp. 204

Development and characterization of a new TILLING population of common bread wheat (Triticum aestivum L.)

A - Papers appearing in refereed journals

Chen, L., Huang, L., Min, D., Phillips, A. L., Wang, S., Madgwick, P. J., Parry, M. A. J. and Hu, Y-G. 2012. Development and characterization of a new TILLING population of common bread wheat (Triticum aestivum L.). PLOS ONE. 7, p. e41570 (11pp). https://doi.org/10.1371/journal.pone.0041570

Regulatory connections between carbon availability, development and environmental stress responses

C2 - Non-edited contributions to conferences

O'hara, L. E., Wingler, A., Knight, H., Paul, M. J. and Schluepmann, H. 2012. Regulatory connections between carbon availability, development and environmental stress responses. Abstracts SEB Annual Main Meeting, Salzburg, 29 June - 2 July 2012 . pp. 263

Molecular mechanism for the interaction between gibberellin and brassinosteroid signaling pathways in Arabidopsis

A - Papers appearing in refereed journals

Gallego-Bartolome, J., Minguet, E. G., Grau-Enguix, F., Abbas, M., Locascio, A., Thomas, S. G., Alabadi, D. and Blazquez, M. A. 2012. Molecular mechanism for the interaction between gibberellin and brassinosteroid signaling pathways in Arabidopsis. Proceedings of the National Academy of Sciences. 109, pp. 13446-13451. https://doi.org/10.1073/pnas.1119992109

Preface (to special issue on resource allocation and growth)

A - Papers appearing in refereed journals

Wingler, A. and Paul, M. J. 2012. Preface (to special issue on resource allocation and growth). Journal of Experimental Botany. 63 (9), pp. 3321-3323. https://doi.org/10.1093/jxb/ers087

Concentrations of free amino acids and sugars in nine potato varieties: effects of storage and relationship with acrylamide formation

A - Papers appearing in refereed journals

Halford, N. G., Muttucumaru, N., Powers, S. J., Gillatt, P. N., Hartley, L., Elmore, J. S. and Mottram, D. S. 2012. Concentrations of free amino acids and sugars in nine potato varieties: effects of storage and relationship with acrylamide formation. Journal of Agricultural and Food Chemistry - JAFC. 60, pp. 12044-12055. https://doi.org/10.1021/jf3037566

Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling

A - Papers appearing in refereed journals

Middleton, A. M., Ubeda-Tomas, S., Griffiths, J., Holman, T., Hedden, P., Thomas, S. G., Phillips, A. L., Holdsworthy, M. J., Bennett, M. J., King, J. R. and Owen, M. R. 2012. Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling. Proceedings of the National Academy of Sciences. 109, pp. 7571-7576. https://doi.org/10.1073/pnas.1113666109

Characterization of the fungal gibberellin desaturase as a 2-oxoglutarate-dependent dioxygenase and its utilization for enhancing plant growth

A - Papers appearing in refereed journals

Bhattacharya, A., Kourmpetli, S., Ward, D. A., Thomas, S. G., Gong, F., Powers, S. J., Carrera, E., Taylor, B., Nunez De Caceres Gonzalez, F., Tudzynski, B., Phillips, A. L., Davey, M. R. and Hedden, P. 2012. Characterization of the fungal gibberellin desaturase as a 2-oxoglutarate-dependent dioxygenase and its utilization for enhancing plant growth. Plant Physiology. 160, pp. 837-845. https://doi.org/10.1104/pp.112.201756

Exploiting genetic variation to increase the dietary fibre content of wheat grain and flour

C1 - Edited contributions to conferences/learned societies

Shewry, P. R., Ulker, M., Lovegrove, A., Freeman, J., Pellny, T. K., Mitchell, R. A. C., Gebruers, K. and Rakszegi, M. 2012. Exploiting genetic variation to increase the dietary fibre content of wheat grain and flour. Lang, L. and Bedo, Z. (ed.) Plant Breeding for Future Generations: Proceedings 19th EUCARPIA General Congress, Budapest, 21-24 May 2012 . Agricultural Institute, Martonvasar. pp. 171-175

An integrated study of grain development of wheat (cv. Hereward)

A - Papers appearing in refereed journals

Shewry, P. R., Mitchell, R. A. C., Tosi, P., Wan, Y., Toscano-Underwood, C., Lovegrove, A., Freeman, J., Toole, G. A., Mills, E. N. C. and Ward, J. L. 2012. An integrated study of grain development of wheat (cv. Hereward). Journal of Cereal Science. 56, pp. 21-30. https://doi.org/10.1016/j.jcs.2011.11.007

Improving wheat health benefits through manipulation of starch composition

C1 - Edited contributions to conferences/learned societies

Lafiandra, D., Sestili, F., Botticella, E. and Phillips, A. L. 2012. Improving wheat health benefits through manipulation of starch composition. Lang, L. and Bedo, Z. (ed.) Plant Breeding for Future Generations: Proceedings 19th EUCARPIA General Congress, Budapest, 21-24 May 2012 . Agricultural Institute, Martonvasar. pp. 180-183

Toward two decades of plant biotechnology: successes, failures and prospects

A - Papers appearing in refereed journals

Halford, N. G. 2012. Toward two decades of plant biotechnology: successes, failures and prospects. Food and Energy Security. 1, pp. 9-28. https://doi.org/10.1002/fes3.3

Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs

A - Papers appearing in refereed journals

Plackett, A. R. G., Powers, S. J., Fernandez-Garcia, N., Urbanova, T., Takebayashi, Y., Seo, M., Jikumaru, Y., Benlloch, R., Nilsson, O., Ruiz-Rivero, O., Phillips, A. L., Wilson, Z. A., Thomas, S. G. and Hedden, P. 2012. Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs. The Plant Cell. 24, pp. 941-960. https://doi.org/10.1105/tpc.111.095109

Gibberellin biosynthesis and its regulation

A - Papers appearing in refereed journals

Hedden, P. and Thomas, S. G. 2012. Gibberellin biosynthesis and its regulation. Biochemical Journal. 444, pp. 11-25. https://doi.org/10.1042/BJ20120245

Engineering gibberellin metabolism in Solanum nigrum L. by ectopic expression of gibberellin oxidase genes

A - Papers appearing in refereed journals

Bhattacharya, A., Ward, D. A., Hedden, P., Phillips, A. L., Power, J. B. and Davey, M. R. 2012. Engineering gibberellin metabolism in Solanum nigrum L. by ectopic expression of gibberellin oxidase genes. Plant Cell Reports. 31, pp. 945-953. https://doi.org/10.1007/s00299-011-1214-8

Shortcomings in wheat yield predictions

A - Papers appearing in refereed journals

Semenov, M. A., Mitchell, R. A. C., Whitmore, A. P., Hawkesford, M. J., Parry, M. A. J. and Shewry, P. R. 2012. Shortcomings in wheat yield predictions. Nature Climate Change. 2, pp. 380-382. https://doi.org/10.1038/nclimate1511

Trehalose 6-phosphate is required for the onset of leaf senescence associated with high carbon availability

A - Papers appearing in refereed journals

Wingler, A., Delatte, T. L., O'hara, L. E., Primavesi, L. F., Jhurreea, D., Paul, M. J. and Schluepmann, H. 2012. Trehalose 6-phosphate is required for the onset of leaf senescence associated with high carbon availability. Plant Physiology. 158 (3), pp. 1241-1251. https://doi.org/10.1104/pp.111.191908

The acrylamide problem: a plant and agronomic science issue

A - Papers appearing in refereed journals

Halford, N. G., Curtis, T. Y., Muttucumaru, N., Postles, J., Elmore, J. S. and Mottram, D. S. 2012. The acrylamide problem: a plant and agronomic science issue. Journal of Experimental Botany. 63, pp. 2841-2851. https://doi.org/10.1093/jxb/ers011

Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome

A - Papers appearing in refereed journals

Pellny, T. K., Lovegrove, A., Freeman, J., Tosi, P., Love, C. G., Knox, J. P., Shewry, P. R. and Mitchell, R. A. C. 2012. Cell walls of developing wheat starchy endosperm: comparison of composition and RNA-Seq transcriptome. Plant Physiology. 158, pp. 612-627. https://doi.org/10.1104/pp.111.189191

Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses

A - Papers appearing in refereed journals

Anders, N., Wilkinson, M. D., Lovegrove, A., Freeman, J., Tryfona, T., Pellny, T. K., Weimar, T., Mortimer, J. C., Stott, K., Baker, J. M., Defoin-Platel, M., Shewry, P. R., Dupree, P. and Mitchell, R. A. C. 2012. Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses. Proceedings of the National Academy of Sciences. 109 (3), pp. 989-993. https://doi.org/10.1073/pnas.1115858109

Genetically modified crops, 2nd ed

E - Books edited/written by staff member, alone/with others

Halford, N. G. 2012. Genetically modified crops, 2nd ed. Imperial College Press, London.

Evidence that abscisic acid promotes degradation of SNF1-related protein kinase (SnRK) 1 in wheat and activation of a putative calcium-dependent SnRK2

A - Papers appearing in refereed journals

Coello, P., Hirano, E., Hey, S. J., Muttucumaru, N., Martinez-Barajas, E., Parry, M. A. J. and Halford, N. G. 2012. Evidence that abscisic acid promotes degradation of SNF1-related protein kinase (SnRK) 1 in wheat and activation of a putative calcium-dependent SnRK2. Journal of Experimental Botany. 63, pp. 913-924. https://doi.org/10.1093/jxb/err320

Overexpression of GCN2-type protein kinase in wheat has profound effects on free amino acid concentration and gene expression

A - Papers appearing in refereed journals

Byrne, E. H., Prosser, I. M., Muttucumaru, N., Curtis, T. Y., Wingler, A., Powers, S. J. and Halford, N. G. 2012. Overexpression of GCN2-type protein kinase in wheat has profound effects on free amino acid concentration and gene expression. Plant Biotechnology Journal. 10 (3), pp. 328-340. https://doi.org/10.1111/j.1467-7652.2011.00665.x

Challenges and opportunities for using wheat for biofuel production

B - Book chapters etc edited externally

Shewry, P. R., Freeman, J., Wilkinson, M. D., Pellny, T. K. and Mitchell, R. A. C. 2011. Challenges and opportunities for using wheat for biofuel production. in: Halford, N. G. and Karp, A. (ed.) Energy Crops London Royal Society of Chemistry (RSC). pp. 13-26 Chapter 2

Producing low acrylamide risk potatoes: a three-year public/private sector collaborative project in the United Kingdom, focussed on genetics, agronomy and storage

C1 - Edited contributions to conferences/learned societies

Halford, N. G. 2011. Producing low acrylamide risk potatoes: a three-year public/private sector collaborative project in the United Kingdom, focussed on genetics, agronomy and storage. Aspects of Applied Biology .

Producing low acrylamide risk potatoes: a three-year public/private sector collaborative project in the United Kingdom, focussed on genetics, agronomy and storage

C1 - Edited contributions to conferences/learned societies

The role of gibberellin in determining wheat grain size and quality

C2 - Non-edited contributions to conferences

Vaughan, S. P., Wanchoo-Kohli, A., Patil, A., Huttly, A. K., Phillips, A. L. and Hedden, P. 2011. The role of gibberellin in determining wheat grain size and quality. ABRATES.

The genetics and biochemistry of wheat grain colour

C2 - Non-edited contributions to conferences

Vaughan, S. P., Baker, J., Ward, J. L., Huttly, A. K. and Phillips, A. L. 2011. The genetics and biochemistry of wheat grain colour. ABRATES.

The role of gibberellin in determining wheat grain size and quality

C1 - Edited contributions to conferences/learned societies

Vaughan, S. P., Wanchoo-Kohli, A., Patil, A., Huttly, A. K., Phillips, A. L. and Hedden, P. 2011. The role of gibberellin in determining wheat grain size and quality. GM Crops: from Basic Research to Application. Aspects of Applied Biology 110 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 14

Systems approaches to crop improvement (Aspects of Applied Biology 107)

E - Books edited/written by staff member, alone/with others

Halford, N. G. and Semenov, M. A. (ed.) 2011. Systems approaches to crop improvement (Aspects of Applied Biology 107). Association of Applied Biologists (AAB) Wellesbourne Warwick .

GM crops: from basic research to application

E - Books edited/written by staff member, alone/with others

Halford, N. G. and Jones, H. D. (ed.) 2011. GM crops: from basic research to application. Association of Applied Biologists (AAB) Wellesbourne Warwick .

Biomass and energy crops IV (Aspects of Applied Biology 112)

E - Books edited/written by staff member, alone/with others

Booth, E., Halford, N. G., Shield, I. F., Taylor, G. and Turley, D. Voigt, T. (ed.) 2011. Biomass and energy crops IV (Aspects of Applied Biology 112). Association of Applied Biologists (AAB) Wellesbourne Warwick .

Molecular characterization of Rht-1 dwarfing genes in hexaploid wheat

A - Papers appearing in refereed journals

Pearce, S., Saville, R., Vaughan, S. P., Chandler, P. M., Wilhelm, E. P., Sparks, C. A., Al-Kaff, N., Korolev, A., Boulton, M. I., Phillips, A. L., Hedden, P., Nicholson, P. and Thomas, S. G. 2011. Molecular characterization of Rht-1 dwarfing genes in hexaploid wheat. Plant Physiology. 157, pp. 1820-1831. https://doi.org/10.1104/pp.111.183657

How do sugars regulate plant growth? A commentary on 'Trehalose 6-phosphate: connecting plant metabolism and development' by Ponnu, J. et al. (2011) Front. Plant Sci. 2:70

A - Papers appearing in refereed journals

Paul, M. J. and Van Dijck, P. 2011. How do sugars regulate plant growth? A commentary on 'Trehalose 6-phosphate: connecting plant metabolism and development' by Ponnu, J. et al. (2011) Front. Plant Sci. 2:70. Frontiers in Plant Science. 2, p. Article 90 (1pp). https://doi.org/10.3389/fpls.2011.00090

High resolution melting analysis for the detection of EMS induced mutations in wheat SBEIIa genes

A - Papers appearing in refereed journals

Botticella, E., Sestili, F., Hernandez-Lopez, A., Phillips, A. L. and Lafiandra, D. 2011. High resolution melting analysis for the detection of EMS induced mutations in wheat SBEIIa genes. BMC Plant Biology. 11, p. 156. https://doi.org/10.1186/1471-2229-11-156

Willow

B - Book chapters etc edited externally

Hanley, S. J. 2011. Willow. in: Karp, A. and Halford, N. G. (ed.) Energy crops Royal Society of Chemistry (RSC), Cambridge. pp. 259-274

The role of plant breeding and biotechnology in meeting the challenge of global warming

B - Book chapters etc edited externally

Halford, N. G. 2011. The role of plant breeding and biotechnology in meeting the challenge of global warming. in: Carayannis, E. G. (ed.) Planet earth 2011 - global warming challenges and opportunities for policy and practice InTechOpen Ltd. pp. 493-506

Gibberellin control of stamen development: a fertile field

A - Papers appearing in refereed journals

Plackett, A. R. G., Thomas, S. G., Wilson, Z. A. and Hedden, P. 2011. Gibberellin control of stamen development: a fertile field. Trends in Plant Science. 16, pp. 568-578. https://doi.org/10.1016/j.tplants.2011.06.007

Growth arrest by trehalose-6-phosphate: an astonishing case of primary metabolite control over growth by way of the SnRK1 signaling pathway

A - Papers appearing in refereed journals

Delatte, T. L., Sedijani, P., Kondou, Y., Matsui, M., De Jong, G. J., Somsen, G. W., Wiese-Klinkenberg, A., Primavesi, L. F., Paul, M. J. and Schluepmann, H. 2011. Growth arrest by trehalose-6-phosphate: an astonishing case of primary metabolite control over growth by way of the SnRK1 signaling pathway. Plant Physiology. 157 (1), pp. 160-174. https://doi.org/10.1104/pp.111.180422