Intelligent Data Ecosystems
| Title | Intelligent Data Ecosystems |
|---|---|
| Type | Science Department |
| Institute | Rothamsted Research |
| Head | Chris Baker |
| Executive Assistant | Sally Murdoch |
Outputs
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Validating a cassava production spatial disaggregation model in sub-Saharan Africa
A - Papers appearing in refereed journals
Hassall, K. L., Alonso Chavez, V., Sint, H. M., Helps, J., Abidrabo, P., Okao-Okuja, G., Eboulem, R. G., Amoakon, W. J., Otron, D. H. and Szyniszewska, A. 2024. Validating a cassava production spatial disaggregation model in sub-Saharan Africa. PLOS ONE. https://doi.org/10.1371/journal.pone.0312734
Swarming insects may have finely tuned characteristic Reynolds numbers
A - Papers appearing in refereed journals
Reynolds, A. M. 2024. Swarming insects may have finely tuned characteristic Reynolds numbers. Biomimetics. 9 (11), p. 660. https://doi.org/10.3390/biomimetics9110660
Identifying the Fusarium effector proteases that play a role in pathogenesis in wheat
A - Papers appearing in refereed journals
Srivastava, M., Kroll, E., Darino, M., Smith, D., Urban, M. and Hammond-Kosack, K. E. 2024. Identifying the Fusarium effector proteases that play a role in pathogenesis in wheat. Molecular Plant-Microbe Interactions - MPMI. 37 (5 supplement), p. S1.24. https://doi.org/10.1094/MPMI-37-5-S1.1
Corrigendum to “Yield responses of arable crops to liming – An evaluation of relationships between yields and soil pH from a long-term liming experiment” [Eur. J. Agron. 105 (2019) 176–188]
A - Papers appearing in refereed journals
Holland, J. E., White, P. J., Glendining, M. J., Goulding, K. W. T. and McGrath, S. P. 2024. Corrigendum to “Yield responses of arable crops to liming – An evaluation of relationships between yields and soil pH from a long-term liming experiment” [Eur. J. Agron. 105 (2019) 176–188]. European Journal of Agronomy. 159 (Sept), p. 127221. https://doi.org/10.1016/j.eja.2024.127221
Spatial correlations in laboratory insect swarms
A - Papers appearing in refereed journals
Reynolds, A. M. 2024. Spatial correlations in laboratory insect swarms. Journal of the Royal Society Interface. 21 (216), p. 20240450. https://doi.org/10.1098/rsif.2024.0450
The role of ruminant urine and faeces in the recycling of nutrients by forages
A - Papers appearing in refereed journals
Kao, P., McGrath, S. P., Buss, H. L., Darch, T., Warren, H. E., Mcauliffe, G., Cardenas, L. M., Blackwell, M. S. A. and Lee, M. R. F. 2024. The role of ruminant urine and faeces in the recycling of nutrients by forages. Scientific Reports. 14, p. 16007. https://doi.org/10.1038/s41598-024-66648-z
Identifying pathways to more sustainable farming using archetypes and Multi-Objective Optimisation
A - Papers appearing in refereed journals
Butikofer, L., Goodwin, C. E., Varma, V., Evans, P. M., Redhead, J. W., Bullock, J. M., Pywell, R. F., Mead, A., Richter, G. M. and Storkey, J. 2024. Identifying pathways to more sustainable farming using archetypes and Multi-Objective Optimisation. Ecological Indicators. 166 (sept), p. 112433. https://doi.org/10.1016/j.ecolind.2024.112433
Sensitivities in associating land-system archetypes with sustainability metrics Insights from simulations
A - Papers appearing in refereed journals
Varma, V., Evans, P. M., Butikofer, L., Goodwin C. E. D., Pywell, R. F., Redhead, J. W., Storkey, J., Bullock, J. M. and Mead, A. 2024. Sensitivities in associating land-system archetypes with sustainability metrics Insights from simulations. bioRxiv. https://doi.org/10.1101/2024.08.01.606212v1
The differential assimilation of nitrogen fertilizer compounds by soil microorganisms
A - Papers appearing in refereed journals
Charteris, A., Knowles, T. D. J., Mead, A., Reay, M. K., Michaelides, K. and Evershed, R. P. 2024. The differential assimilation of nitrogen fertilizer compounds by soil microorganisms . FEMS Microbiology Letters. 371, p. fnae041. https://doi.org/10.1093/femsle/fnae041
Development of inoculation methods for Pythium violae to evaluate resistance of carrot cultivars and efficacy of crop protection products for cavity spot control
A - Papers appearing in refereed journals
Pereira, N., Hales, K. R., Mead, A., Chappell, L. H. K., Barker, G. C. and Clarkson, J. P. 2024. Development of inoculation methods for Pythium violae to evaluate resistance of carrot cultivars and efficacy of crop protection products for cavity spot control. Plant Pathology. https://doi.org/10.1111/ppa.13967
A Bayesian approach to analyzing long-term agricultural experiments
A - Papers appearing in refereed journals
Addy, J., Maclaren, C. and Lang, R. 2024. A Bayesian approach to analyzing long-term agricultural experiments . European Journal of Agronomy. 159 (Sept), p. 127227. https://doi.org/10.1016/j.eja.2024.127227
Navigating the Fusarium species complex: Host-range plasticity and genome variations
A - Papers appearing in refereed journals
Armer, V., Kroll, E., Darino, M., Smith, D., Urban, M. and Hammond-Kosack, K. E. 2024. Navigating the Fusarium species complex: Host-range plasticity and genome variations. Fungal Biology. https://doi.org/10.1016/j.funbio.2024.07.004
Spatial Variation in the Integrated Assessment of Pasture Dynamics and Soil Health on the North Wyke Farm Platform
N - Datasets
Yan, J., Ye, H., Le-Grice, P., Beaumont, D. A., Darch, T. and Hodge, J. A. 2024. Spatial Variation in the Integrated Assessment of Pasture Dynamics and Soil Health on the North Wyke Farm Platform. Rothamsted Research. https://doi.org/10.23637/rothamsted.990y5
Using long-term experiments to assess statistical models for determining critical P fertilisation thresholds
A - Papers appearing in refereed journals
Jordan-Meille, L., Mollier, A., Poulton, P. R., Glendining, M. J., Jouany, C., Gratecap, J. -., Hanocq, D., Montagnier, C. and Denoroy, P. 2024. Using long-term experiments to assess statistical models for determining critical P fertilisation thresholds. European Journal of Agronomy. 158 (August), p. 127220. https://doi.org/10.1016/j.eja.2024.127220
Why insect swarms seem unduly complicated
A - Papers appearing in refereed journals
Reynolds, A. M. 2024. Why insect swarms seem unduly complicated. European Physical Journal Plus. 139, p. 610. https://doi.org/10.1140/epjp/s13360-024-05401-x
Future proofing a long-term agricultural experiment for decades to come - Relocation and redesign
A - Papers appearing in refereed journals
Watson, C. A., Topp, C. F. E., Mead, A., Fraser, F., Fernandez-Huarte, M., Horne, J., Paton, G. I., Hallett, P. D., Norton, G., Graham, R. I. and Walker, R. L. 2024. Future proofing a long-term agricultural experiment for decades to come - Relocation and redesign. European Journal of Agronomy. 158 (August), p. 127214. https://doi.org/10.1016/j.eja.2024.127214
A fungal endophyte induces local cell-wall mediated resistance in wheat roots against take-all disease
A - Papers appearing in refereed journals
Chancellor, T., Smith, D. P., Chen, W., Clark, S. J., Venter, E., Halsey, K., Carrera, E., Mcmillan, V. E., Canning, G., Armer, V., Hammond-Kosack, K. E. and Palma-Guerrero, J. 2024. A fungal endophyte induces local cell-wall mediated resistance in wheat roots against take-all disease. Frontiers in Plant Science. 15, p. 1444271. https://doi.org/10.3389/fpls.2024.1444271
Stacked mutations in wheat homologues of rice SEMI-DWARF1 confer a novel semi-dwarf phenotype
A - Papers appearing in refereed journals
Ndreca, B., Huttly, A. K., Bibi, S., Bayon, C., Lund, G., Ham, J., Alarcon-Reverte, R., Addy, J., Tarkowská, D., Pearce, S., Hedden, P., Thomas, S. G. and Phillips, A. L. 2024. Stacked mutations in wheat homologues of rice SEMI-DWARF1 confer a novel semi-dwarf phenotype. BMC Plant Biology. 24, p. 384. https://doi.org/10.1186/s12870-024-05098-1
Projecting the Contribution of Provitamin A Maize Biofortification and Other Nutrition Interventions to the Nutritional Adequacy and Cost of Diets in Rural Zimbabwe
A - Papers appearing in refereed journals
Baudron, F., Cairns, J. E., Haefele, S. M., Hassall, K. L., Ndhlela, T., Nyagumbo, I., Kangara, G. and Joy, E. 2024. Projecting the Contribution of Provitamin A Maize Biofortification and Other Nutrition Interventions to the Nutritional Adequacy and Cost of Diets in Rural Zimbabwe. Journal Of Nutrition. 154 (6), pp. 1815-1826. https://doi.org/10.1016/j.tjnut.2024.04.009
Quantifying the impact of Psylliodes chrysocephala injury on the productivity of oilseed rape
A - Papers appearing in refereed journals
Coston, D. J., Clark, S. J., Breeze, T. D., Field, L. M., Potts, S. G. and Cook, S. M. 2024. Quantifying the impact of Psylliodes chrysocephala injury on the productivity of oilseed rape. Pest Management Science. 80 (5), pp. 2383-2392. https://doi.org/10.1002/ps.7860
Limited complementarity of functional and taxonomic diversity in Chilean benthic marine invertebrates
A - Papers appearing in refereed journals
Pino-Chandia, L. and Webb, T. J. 2024. Limited complementarity of functional and taxonomic diversity in Chilean benthic marine invertebrates. Diversity and Distributions. p. e13835. https://doi.org/10.1111/ddi.13835
Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum)
Conference poster
Blyth, H. R., Zarsav, A., Smith, D., Kanyuka, K., Hassall, K. L., Michaelson, L. V., Rudd, J. J. and Haslam, R. P. 2024. Feeling the Heat: Investigating the dual assault of Zymoseptoria tritici and Heat Stress on Wheat (Triticum aestivum) . 32nd Fungal Genetics Conference. Asilomar Conference Grounds, Pacific Grove, CA 12 Mar 2024
Stepwise model parametrisation using satellite imagery and hemispherical photography: Tuning AquaCrop sensitive parameters for improved winter wheat yield predictions in semi-arid regions
A - Papers appearing in refereed journals
Oulaid, B., Milne, A. E., Waine, T., Alami, R. E., Rafiqi, M. and Corstanje, R. 2024. Stepwise model parametrisation using satellite imagery and hemispherical photography: Tuning AquaCrop sensitive parameters for improved winter wheat yield predictions in semi-arid regions. Field Crops Research. 309, p. 109327. https://doi.org/10.1016/j.fcr.2024.109327
Soil Map of Rothamsted Estate
N - Datasets
Avery, B. W., Catt, J. A., Coleman, K., Pino-Chandia, L. and Ostler, R. 2024. Soil Map of Rothamsted Estate. Rothamsted Research. https://doi.org/10.23637/rothamsted.98z89
Identification and functional characterisation of a locus for target site integration in Fusarium graminearum
A - Papers appearing in refereed journals
Darino, M., Urban, M., Kaur, N., Wood, A. K. M., Smith, D., Grimwade-Mann, M., Beacham, A. and Hammond-Kosack, K. E. 2024. Identification and functional characterisation of a locus for target site integration in Fusarium graminearum. Fungal Biology and Biotechnology. 11 (2), pp. 1-21. https://doi.org/10.1186/s40694-024-00171-8
The Broadbalk Wheat Experiment, Rothamsted, UK Crop yields and soil changes during the last 50 years
A - Papers appearing in refereed journals
Poulton, P. R., Johnston, A. E., Glendining, M. J., White, R. P., Gregory, A. S., Clark, S. J., Gregory, W., Macdonald, A. J. and Powlson, D. S. 2024. The Broadbalk Wheat Experiment, Rothamsted, UK Crop yields and soil changes during the last 50 years. Advances in Agronomy. 184, pp. 173-298. https://doi.org/10.1016/bs.agron.2023.11.003
Why do we make changes to the long-term experiments at Rothamsted?
A - Papers appearing in refereed journals
Poulton, P. R., Powlson, D. S., Glendining, M. J. and Gregory, A. S. 2024. Why do we make changes to the long-term experiments at Rothamsted? European Journal of Agronomy. 154 (March), p. 127062. https://doi.org/10.1016/j.eja.2023.127062
The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum)
A - Papers appearing in refereed journals
Harrison, C., Noleto-Dias, C., Ruvo, G., Hughes, D. J., Smith, D., Mead, A., Ward, J. L., Heuer, S. and Macgregor, D. 2024. The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum). Functional Plant Biology. 51, p. FP23193. https://doi.org/10.1071/FP23193
Effect of Additional Herbage Areas on Grazing Dairy Cows in Commercial Herds Using Global Positioning and Long-Range Wide Area Network: A Case Study to Assess Changes in Herbage Intake and Milk Yield
A - Papers appearing in refereed journals
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2024. Effect of Additional Herbage Areas on Grazing Dairy Cows in Commercial Herds Using Global Positioning and Long-Range Wide Area Network: A Case Study to Assess Changes in Herbage Intake and Milk Yield. Archivos Latinoamericanos de Produccion Animal. 32 (1), pp. 37-54. https://doi.org/10.53588/alpa.320104
Ecological Intensification and the sustainable use of fertilisers
A - Papers appearing in refereed journals
Storkey, J., Maclaren, C. and Mead, A. 2023. Ecological Intensification and the sustainable use of fertilisers. Proceedings of the International Fertiliser Society. 886, pp. 1-20.
Smallholder farmer resilience to extreme weather events in a global food value chain
A - Papers appearing in refereed journals
Thompson, W. J., Varma, V., Joerin, J., Bonilla-Duarte, S., Bebber, D. P., Blaser-Hart, W., Kopainsky, B., Spath, L., Curcio, B., Six, J. and Krutli, P. 2023. Smallholder farmer resilience to extreme weather events in a global food value chain. Climatic Change. 176, p. 152. https://doi.org/10.1007/s10584-023-03586-1
The impact of feeding supplemental minerals to sheep on the return of micronutrients to pasture via urine and faeces
A - Papers appearing in refereed journals
Kao, P-T., Fleming, H. R., Warren, H., Darch, T., McGrath, S. P., Buss, H. L. and Lee, M. R. F. 2023. The impact of feeding supplemental minerals to sheep on the return of micronutrients to pasture via urine and faeces. Scientific Reports. 13, p. 2747. https://doi.org/10.1038/s41598-023-29717-3
Mosquito swarms shear harden
A - Papers appearing in refereed journals
Reynolds, A. M. 2023. Mosquito swarms shear harden. European Physical Journal E. 46, p. 126. https://doi.org/10.1140/epje/s10189-023-00379-3
Linking soil adsorption-desorption characteristics with grain zinc concentrations and uptake by teff, wheat and maize in different landscape positions in Ethiopia
A - Papers appearing in refereed journals
Kebede-Desta, M., Broadley, M., McGrath, S. P., Hernandez-Allica, J., Hassall, K. L., Gameda, S., Amede, T. and Haefele, S. M. 2023. Linking soil adsorption-desorption characteristics with grain zinc concentrations and uptake by teff, wheat and maize in different landscape positions in Ethiopia. Frontiers in Agronomy. 5, p. 1285880. https://doi.org/10.3389/fagro.2023.1285880
A new Rothamsted long-term field experiment for the twenty-first century: principles and practice
A - Papers appearing in refereed journals
Li, X., Storkey, J., Mead, A., Shield, I. F., Clark, I. M., Ostler, R., Roberts, B. and Dobermann, A. 2023. A new Rothamsted long-term field experiment for the twenty-first century: principles and practice. Agronomy for Sustainable Development - ASD. 43 (5), p. 60. https://doi.org/10.1007/s13593-023-00914-8
Identifying yield stability over time via time-varying GARCH processes and multivariate Horseshoe priors
C2 - Non-edited contributions to conferences
Addy, J., Maclaren, C. and Hassall, K. L. 2023. Identifying yield stability over time via time-varying GARCH processes and multivariate Horseshoe priors. 9th Channel Network Conference: CNC23. Wageningen, The Netherlands 23 Aug 2023
Phase transitions in insect swarms
A - Papers appearing in refereed journals
Reynolds, A. M. 2023. Phase transitions in insect swarms . Physical Biology. 20 (5), p. 054001. https://doi.org/10.1088/1478-3975/aceece
AgroEcoList 1.0 A checklist to improve reporting standards in ecological research in agriculture
A - Papers appearing in refereed journals
Daykin, G. M., Aizen, M. A., Barrett, L. G., Bartlett, L. J., Batary, P., Garibaldi, L. A., Guncan, A., Gutam, S., Maas, B., Mitnala, J., Montano-Centellas, F., Muoni, T., Ockinger, E., Okechalu, O., Ostler, R., Potts, S. G., Rose, D. C., Topp, C. F. E., Usieta, H. O., Utoblo, O. G., Watson, C., Zou, Y., Sutherland, W. J. and Hood, A. S. C. 2023. AgroEcoList 1.0 A checklist to improve reporting standards in ecological research in agriculture. PLOS ONE. 18 (6), p. e0285478. https://doi.org/10.1371/journal.pone.0285478
Identification of Traits Underpinning Good Breadmaking Performance of Wheat Grown with Reduced Nitrogen Fertilisation
A - Papers appearing in refereed journals
Shewry, P. R., Wood, A., Hassall, K. L., Pellny, T. K., Riche, A. B., Hussain, A., Shi, Z., Mosleth, E. F., Charlton, M., Poole, M., Jones, S., Newton, K., Penson, S., Tucker, G., Griffiths, S. and Hawkesford, M. J. 2023. Identification of Traits Underpinning Good Breadmaking Performance of Wheat Grown with Reduced Nitrogen Fertilisation. Journal of the Science of Food and Agriculture. 103 (15), pp. 7664-7672. https://doi.org/10.1002/jsfa.12848
Effects of hotter, drier conditions on gaseous losses from nitrogen fertilisers
A - Papers appearing in refereed journals
Drame, M., Carswell, A. M., Roberts, W., Hood, J., Jemo, M., Heuer, S., Kirk, G., Pawlett, M. and Misselbrook, T. H. 2023. Effects of hotter, drier conditions on gaseous losses from nitrogen fertilisers. Journal of Environmental Management. 345, p. 118671. https://doi.org/10.1016/j.jenvman.2023.118671
People
- Abrare, Sadik
- Al-Manir, Mohammad
- Baker, Chris
- Beard, Nik
- Brandizi, Marco
- Casaletto, Michael
- Castells, Nathalie
- Clark, Suzanne
- Darch, Tegan
- De-Klerk, Arne
- Doran, Pamela
- Dudley, Ryan
- Edwins, Simon
- Espino, Apple
- Fakeye, Ireoluwa
- Glendining, Margaret
- Hassani-Pak, Keywan
- Holegar, Sam
- Hughes, David
- Inegbedion, Grace
- Jimoh, Ibrahim
- Kendall, Kevin
- Lannan, Lewis
- Leask, Graham
- Low, Harriet
- Maas, Ellen
- Mead, Andrew
- Minea, Constantin
- Miniailo, Kateryna
- Mishra, Harsh
- Morosan, Alexandru
- North, Teri
- Nureldin, Hazem
- Ostler, Richard
- Oulaid, Bader
- Payne, Roger
- Perryman, Sarah
- Pino-Chandia, Loreto
- Rawlings, Chris
- Reilly, Kirsten
- Reilly, Peter
- Reynolds, Andy
- Ross, Gavin
- Saeed, Sana
- Seed-Ahmed, Omer
- Sewpersad, Nikki
- Thompson, Robin
- Tooth, Mark
- Torrenti, Felipe
- Varma, Varun
- Velasquez, Melina
- Vijayakumar-Ram, Gokul
- Warr, Alex
- Webb, Philip
- Winfield, Oliver