Application of statistical methods to predictive biology
Project (past)
| Project dates | 01 Apr 2008 to end of 31 Mar 2012 |
|---|---|
| Funder | Biotechnology and Biological Sciences Research Council |
| Project number | 4937 |
| S4937 | |
| Department | Biomathematics and Bioinformatics (BAB) |
| Research fish code | BBS/E/C/00004937 |
| Grant ID | BBS/E/C/00004937 |
Outputs
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Effect of root nitrogen supply forms on attraction and repulsion of second-stage juveniles of Meloidogyne graminicola
A - Papers appearing in refereed journals
Patil, J., Powers, S. J., Davies, K. G., Gaur, H. S. and Miller, A. J. 2013. Effect of root nitrogen supply forms on attraction and repulsion of second-stage juveniles of Meloidogyne graminicola. Nematology. 15, pp. 469-482. https://doi.org/10.1163/15685411-00002697
Effects of nitrogen and sulfur fertilization on free amino acids, sugars and acrylamide-forming potential in potato
A - Papers appearing in refereed journals
Muttucumaru, N., Powers, S. J., Elmore, J. S., Mottram, D. S. and Halford, N. G. 2013. Effects of nitrogen and sulfur fertilization on free amino acids, sugars and acrylamide-forming potential in potato. Journal of Agricultural and Food Chemistry - JAFC. 61, pp. 6734-6742. https://doi.org/10.1021/jf401570x
Differential defence response due to jasmonate seed treatment in cowpea and tomato against root-knot and potato cyst nematodes
A - Papers appearing in refereed journals
Pankaj, Muttucumaru, N., Powers, S. J., Gaur, H. S., Kurup, S. and Curtis, R. H. C. 2013. Differential defence response due to jasmonate seed treatment in cowpea and tomato against root-knot and potato cyst nematodes. Nematology. 15, pp. 15-21. https://doi.org/10.1163/156854112X641754
Effects of variety and nutrient availability on the acrylamide-forming potential of rye grain
A - Papers appearing in refereed journals
Postles, J., Powers, S. J., Elmore, J. S., Mottram, D. S. and Halford, N. G. 2013. Effects of variety and nutrient availability on the acrylamide-forming potential of rye grain. Journal of Cereal Science. 57, pp. 463-470. https://doi.org/10.1016/j.jcs.2013.02.001
Shared influence of pathogen and host genetics on a trade-off between latent period and spore production capacity in the wheat pathogen, Puccinia triticina
A - Papers appearing in refereed journals
Pariaud, B., Van Den Berg, F., Van Den Bosch, F., Powers, S. J., Kaltz, O. and Lannou, C. 2013. Shared influence of pathogen and host genetics on a trade-off between latent period and spore production capacity in the wheat pathogen, Puccinia triticina. Evolutionary Applications. 6 (2), pp. 303-312. https://doi.org/10.1111/eva.12000
Inhibition of SnRK1 by metabolites: tissue-dependent effects and cooperative inhibition by glucose 1-phosphate in combination with trehalose 6-phosphate
A - Papers appearing in refereed journals
Nunes, C., Primavesi, L. F., Patel, M. K., Martinez-Barajas, E., Powers, S. J., Sagar, R., Fevereiro, P. S., Davis, B. G. and Paul, M. J. 2013. Inhibition of SnRK1 by metabolites: tissue-dependent effects and cooperative inhibition by glucose 1-phosphate in combination with trehalose 6-phosphate. Plant Physiology and Biochemistry. 63, pp. 89-98. https://doi.org/10.1016/j.plaphy.2012.11.011
Inoculum levels of Meloidogyne hispanica and M. javanica affect nematode reproduction and growth of tomato genotypes
A - Papers appearing in refereed journals
Maleita, C. M. N., Curtis, R. H. C., Powers, S. J. and Abrantes, I. M. De O. 2012. Inoculum levels of Meloidogyne hispanica and M. javanica affect nematode reproduction and growth of tomato genotypes. Phytopathologia mediterranea. 51, pp. 566-576. https://doi.org/10.14601/Phytopathol_Mediterr-9740
Effect of small lipophilic molecules in tomato and rice root exudates on the behaviour of Meloidogyne incognita and M. graminicola
A - Papers appearing in refereed journals
Dutta, T. K., Powers, S. J., Gaur, H. S., Birkett, M. A. and Curtis, R. H. C. 2012. Effect of small lipophilic molecules in tomato and rice root exudates on the behaviour of Meloidogyne incognita and M. graminicola. Nematology. 14, pp. 309-320. https://doi.org/10.1163/156854111X612306
Host status of cultivated plants to Meloidogyne hispanica
A - Papers appearing in refereed journals
Maleita, C. M. N., Curtis, R. H. C., Powers, S. J. and Abrantes, I. M. De O. 2012. Host status of cultivated plants to Meloidogyne hispanica. European Journal of Plant Pathology. 133, pp. 449-460. https://doi.org/10.1007/s10658-011-9918-8
Statistics in nematology
B - Book chapters etc edited externally
Powers, S. J. 2012. Statistics in nematology. in: Manzanilla-Lopez, R. H. and Marban-Mendoza, N. (ed.) Practical plant nematology Biblioteca Basica de Agricultura, Texcoco. pp. 841-870
Molecular phylogenetics using maximum-likelihood
B - Book chapters etc edited externally
Loza-Reyes, E. 2012. Molecular phylogenetics using maximum-likelihood. in: Manzanilla-Lopez, R. H. and Marban-Mendoza, M. (ed.) Practical plant nematology Biblioteca Basica de Agricultura, Montecillo. pp. 147-160
Repellents inhibit P450 enzymes in Stegomyia (Aedes) aegypti
A - Papers appearing in refereed journals
Jaramillo Ramirez, G. I., Logan, J. G., Loza-Reyes, E., Stashenko, E. and Moores, G. D. 2012. Repellents inhibit P450 enzymes in Stegomyia (Aedes) aegypti. PLOS ONE. 7, p. e48698 (8pp). https://doi.org/10.1371/journal.pone.0048698
Three-point appraisal of genetic linkage maps
A - Papers appearing in refereed journals
Gilks, W. R., Welham, S. J., Wang, J., Clark, S. J. and King, G. J. 2012. Three-point appraisal of genetic linkage maps. Theoretical and Applied Genetics. 125, pp. 1393-1402. https://doi.org/10.1007/s00122-012-1920-9
Concentrations of free amino acids and sugars in nine potato varieties: effects of storage and relationship with acrylamide formation
A - Papers appearing in refereed journals
Halford, N. G., Muttucumaru, N., Powers, S. J., Gillatt, P. N., Hartley, L., Elmore, J. S. and Mottram, D. S. 2012. Concentrations of free amino acids and sugars in nine potato varieties: effects of storage and relationship with acrylamide formation. Journal of Agricultural and Food Chemistry - JAFC. 60, pp. 12044-12055. https://doi.org/10.1021/jf3037566
Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs
A - Papers appearing in refereed journals
Plackett, A. R. G., Powers, S. J., Fernandez-Garcia, N., Urbanova, T., Takebayashi, Y., Seo, M., Jikumaru, Y., Benlloch, R., Nilsson, O., Ruiz-Rivero, O., Phillips, A. L., Wilson, Z. A., Thomas, S. G. and Hedden, P. 2012. Analysis of the developmental roles of the Arabidopsis gibberellin 20-oxidases demonstrates that GA20ox1, -2 and -3 are the dominant paralogs. The Plant Cell. 24, pp. 941-960. https://doi.org/10.1105/tpc.111.095109
The trait and host plant ecology of aphids and their distribution and abundance in the United Kingdom
A - Papers appearing in refereed journals
Bell, J. R., Taylor, M. S., Shortall, C. R., Welham, S. J. and Harrington, R. 2012. The trait and host plant ecology of aphids and their distribution and abundance in the United Kingdom. Global Ecology and Biogeography. 21 (4), pp. 405-415. https://doi.org/10.1111/j.1466-8238.2011.00685.x
Trophic links between functional groups of arable plants and beetles are stable at national scale
A - Papers appearing in refereed journals
Brooks, D. R., Storkey, J., Clark, S. J., Firbank, L. G., Petit, S. and Woiwod, I. P. 2012. Trophic links between functional groups of arable plants and beetles are stable at national scale. Journal of Animal Ecology. 81 (1), pp. 4-13. https://doi.org/10.1111/j.1365-2656.2011.01897.x
Overexpression of GCN2-type protein kinase in wheat has profound effects on free amino acid concentration and gene expression
A - Papers appearing in refereed journals
Byrne, E. H., Prosser, I. M., Muttucumaru, N., Curtis, T. Y., Wingler, A., Powers, S. J. and Halford, N. G. 2012. Overexpression of GCN2-type protein kinase in wheat has profound effects on free amino acid concentration and gene expression. Plant Biotechnology Journal. 10 (3), pp. 328-340. https://doi.org/10.1111/j.1467-7652.2011.00665.x
Competition effects in a young Sitka spruce (Picea sitchensis, Bong. Carr) clonal trial
A - Papers appearing in refereed journals
Brotherstone, S., White, I. M. S., Sykes, R., Thompson, R., Connolly, T., Lee, S. and Woolliams, J. 2011. Competition effects in a young Sitka spruce (Picea sitchensis, Bong. Carr) clonal trial. Silvae Genetica. 60 (3/4), pp. 149-155. https://doi.org/10.1515/sg-2011-0020
Aspects of the behaviour of Globodera pallida in the rhizosphere of the trap crop, Solanum sisymbriifolium
C2 - Non-edited contributions to conferences
Sasaki-Crawley, A., Curtis, R. H. C., Birkett, M. A., Powers, S. J., Papadopoulos, A., Blackshaw, R. and Pickett, J. A. 2011. Aspects of the behaviour of Globodera pallida in the rhizosphere of the trap crop, Solanum sisymbriifolium. Abstracts SEE11 Joint Meeting of the Royal Entomological Society of London and the Soil Ecology Society, Plymouth, 14-16 September 2011 .
How does Solanum sisymbriifolium affect Globodera pallida behaviour?
C2 - Non-edited contributions to conferences
Sasaki-Crawley, A., Curtis, R. H. C., Birkett, M. A., Powers, S. J., Papadopoulos, A., Blackshaw, R. P. and Pickett, J. A. 2011. How does Solanum sisymbriifolium affect Globodera pallida behaviour? Abstracts 43rd ONTA Annual Meeting, Coimbra, 4-9 September 2011 .
Plant-nematode interactions: Globodera pallida and Solanum sisymbriifolium
C2 - Non-edited contributions to conferences
Sasaki-Crawley, A., Curtis, R. H. C., Birkett, M. A., Powers, S. J., Papadopoulos, A., Blackshaw, R. and Pickett, J. A. 2011. Plant-nematode interactions: Globodera pallida and Solanum sisymbriifolium. Abstracts AAB Conference Advances in Nematology, London, 13 December 2011 .
Biological and physiological aspects in the host-parasitic relationship of the nematophagous fungus Pochonia chlamydosporia
C1 - Edited contributions to conferences/learned societies
Manzanilla-Lopez, R. H., Esteves, I., Powers, S. J. and Kerry, B. R. 2011. Biological and physiological aspects in the host-parasitic relationship of the nematophagous fungus Pochonia chlamydosporia.
Fitness trade-off in peach-potato aphids (Myzus persicae) between insecticide resistance and vulnerability to parasitoid attack at several spatial scales
A - Papers appearing in refereed journals
Foster, S. P., Denholm, I., Poppy, G. M., Thompson, R. and Powell, W. 2011. Fitness trade-off in peach-potato aphids (Myzus persicae) between insecticide resistance and vulnerability to parasitoid attack at several spatial scales. Bulletin of Entomological Research. 101 (6), pp. 659-666. https://doi.org/10.1017/S0007485310000623
An engineered pathway for glyoxylate metabolism in tobacco plants aimed to avoid the release of ammonia in photorespiration
A - Papers appearing in refereed journals
Carvalho, J. De F. C., Madgwick, P. J., Powers, S. J., Keys, A. J., Lea, P. J. and Parry, M. A. J. 2011. An engineered pathway for glyoxylate metabolism in tobacco plants aimed to avoid the release of ammonia in photorespiration. BMC Biotechnology. 11, p. 111 (17pp). https://doi.org/10.1186/1472-6750-11-111
Effect of the Mi gene on reproduction of Meloidogyne hispanica on tomato genotypes
A - Papers appearing in refereed journals
Maleita, C. M., Viera Dos Santos, M. C., Curtis, R. H. C., Powers, S. J. and Abrantes, I. M. De O. 2011. Effect of the Mi gene on reproduction of Meloidogyne hispanica on tomato genotypes. Nematology. 13, pp. 939-949. https://doi.org/10.1163/138855411X566449
Genomic and pedigree-based genetic parameters for scarcely recorded traits when some animals are genotyped
A - Papers appearing in refereed journals
Veerkamp, R. F., Mulder, H. A., Thompson, R. and Calus, M. P. L. 2011. Genomic and pedigree-based genetic parameters for scarcely recorded traits when some animals are genotyped. Journal of Dairy Science. 94 (8), pp. 4189-4197. https://doi.org/10.3168/jds.2011-4223
Joint modeling of spatial variability and within-row interplot competition to increase the efficiency of plant improvement
A - Papers appearing in refereed journals
Stringer, J. K., Cullis, B. R. and Thompson, R. 2011. Joint modeling of spatial variability and within-row interplot competition to increase the efficiency of plant improvement. Journal of Agricultural Biological and Environmental Statistics. 16 (2), pp. 269-281. https://doi.org/10.1007/s13253-010-0051-5
Determination of the N -glycosylation patterns of seed proteins: applications to determine the authenticity and substantial equivalence of genetically modified (GM) crops
A - Papers appearing in refereed journals
Marsh, J. T., Tryfona, T., Powers, S. J., Stephens, E., Dupree, P., Shewry, P. R. and Lovegrove, A. 2011. Determination of the N -glycosylation patterns of seed proteins: applications to determine the authenticity and substantial equivalence of genetically modified (GM) crops. Journal of Agricultural and Food Chemistry - JAFC. 59, pp. 8779-8788. https://doi.org/10.1021/jf2010854
Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa
A - Papers appearing in refereed journals
Hammond, J. P., Mayes, S., Bowen, H. C., Graham, N. S., Hayden, R. M., Love, C. G., Spracklen, W. P., Wang, J., Welham, S. J., White, P. J., King, G. J. and Broadley, M. R. 2011. Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa. Plant Physiology. 156, pp. 1230-1241. https://doi.org/10.1104/pp.111.175612
Identification of new single nucleotide polymorphism-based markers for inter- and intraspecies discrimination of obligate bacterial parasites (Pasteuria spp.) of invertebrates
A - Papers appearing in refereed journals
Mauchline, T. H., Knox, R., Mohan, S., Powers, S. J., Kerry, B. R., Davies, K. G. and Hirsch, P. R. 2011. Identification of new single nucleotide polymorphism-based markers for inter- and intraspecies discrimination of obligate bacterial parasites (Pasteuria spp.) of invertebrates. Applied and Environmental Microbiology. 77, pp. 6388-6394. https://doi.org/10.1128/AEM.05185-11
Modelling rotations: can crop sequences explain arable seedbank abundance?
A - Papers appearing in refereed journals
Bohan, D. A., Powers, S. J., Champion, G., Haughton, A. J., Hawes, C., Squire, G., Cussans, J. and Mertens, S. K. 2011. Modelling rotations: can crop sequences explain arable seedbank abundance? Weed Research. 51 (4), pp. 422-432. https://doi.org/10.1111/j.1365-3180.2011.00860.x
Genetic mapping of rust resistance loci in biomass willow
A - Papers appearing in refereed journals
Hanley, S. J., Pei, M. H., Powers, S. J., Ruiz, C., Mallott, M. D., Barker, J. H. A. and Karp, A. 2011. Genetic mapping of rust resistance loci in biomass willow. Tree Genetics & Genomes. 7 (3), pp. 597-608. https://doi.org/10.1007/s11295-010-0359-x
Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat
A - Papers appearing in refereed journals
Marshall, R., Kombrink, A., Motteram, J., Loza-Reyes, E., Lucas, J. A., Hammond-Kosack, K. E., Thomma, B. P. H. J. and Rudd, J. J. 2011. Analysis of two in planta expressed LysM effector homologs from the fungus Mycosphaerella graminicola reveals novel functional properties and varying contributions to virulence on wheat. Plant Physiology. 156, pp. 756-769. https://doi.org/10.1104/pp.111.176347
Comparison of host recognition, invasion, development and reproduction of Meloidogyne graminicola and M. incognita on rice and tomato
A - Papers appearing in refereed journals
Dutta, T. K., Powers, S. J., Kerry, B. R., Gaur, H. S. and Curtis, R. H. C. 2011. Comparison of host recognition, invasion, development and reproduction of Meloidogyne graminicola and M. incognita on rice and tomato. Nematology. 13, pp. 509-520. https://doi.org/10.1163/138855410X528262
The design and analysis of variety trials using mixtures of composite and individual plot samples
A - Papers appearing in refereed journals
Smith, A. B., Thompson, R., Butler, D. G. and Cullis, B. R. 2011. The design and analysis of variety trials using mixtures of composite and individual plot samples. Journal of the Royal Statistical Society, Series C (Applied Statistics). 60 (3), pp. 437-455. https://doi.org/10.1111/j.1467-9876.2010.00755.x
Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment
A - Papers appearing in refereed journals
Urban, M., Motteram, J., Jing, H-C., Powers, S. J., Townsend, J. A., Devonshire, J., Pearman, I., Kanyuka, K., Franklin, J. F. and Hammond-Kosack, K. E. 2011. Inactivation of plant infecting fungal and viral pathogens to achieve biological containment in drainage water using UV treatment. Journal of Applied Microbiology. 110 (3), pp. 675-687. https://doi.org/10.1111/j.1365-2672.2010.04917.x
Maternal risk factors in Afghan-refugees compared to Pakistani mothers in Peshawar, NWFP Pakistan
A - Papers appearing in refereed journals
Badshah, S., Mason, L., Mckelvie, K., Payne, R. W. and Lisboa, P. J. G. 2011. Maternal risk factors in Afghan-refugees compared to Pakistani mothers in Peshawar, NWFP Pakistan. Journal Of The Pakistan Medical Association. 61, pp. 161-164.
Mapping the three-dimensional variation of electrical conductivity in a paddy rice soil
C2 - Non-edited contributions to conferences
Li, H. Y., Shi, Z., Webster, R. and Guo, Y. 2010. Mapping the three-dimensional variation of electrical conductivity in a paddy rice soil. Abstracts 19th World Congress of Soil Science: Soil Solutions for a Changing World, Brisbane, 1-6 August 2010 . pp. 95-98
Estimation of spatial trend and automatic model selection in augmented designs
A - Papers appearing in refereed journals
Kehel, Z., Habash, D. Z., Gezan, S. A., Welham, S. J. and Nachit, M. M. 2010. Estimation of spatial trend and automatic model selection in augmented designs. Agronomy Journal. 102, pp. 1542-1552. https://doi.org/10.2134/agronj2010.0175