CAS: Statistics and Ecoinformatics
| Title | CAS: Statistics and Ecoinformatics |
|---|---|
| Type | Research cluster |
Outputs
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Novel molecules and target genes for vegetative heat tolerance in wheat
A - Papers appearing in refereed journals
Rose, T., Wilkinson, M. D., Lowe, C., Xu, J., Hughes, D. J., Hassall, K. L., Hassani-Pak, K., Amberkar, S., Noleto-Dias, C., Ward, J. L. and Heuer, S. 2022. Novel molecules and target genes for vegetative heat tolerance in wheat. Plant Environmental Interactions. 3 (6), pp. 264-289. https://doi.org/10.1002/pei3.10096
Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses
Conference poster
Sokolidi, A., Webster, R., Milne, A. E., Clark, S. J., Clarkson, J., Bielik M., Morley, P. and West, J. S. 2022. Early Detection and Spread of Tomato Powdery Mildew (TPM) in Commercial Greenhouses. APS AGM - Plant Health 2022. Pittsburgh, Pennsylvania, USA 06 Aug 2022
A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades
A - Papers appearing in refereed journals
Addy, J. W. G., Ellis, R. H., MacLaren, C., Macdonald, A. J., Semenov, M. A. and Mead, A. 2022. A heteroskedastic model of park grass spring hay yields in response to weather suggests continuing yield decline with climate change in future decades. Journal of the Royal Society Interface. 19 (193), p. 20220361. https://doi.org/10.1098/rsif.2022.0361
Extending meta-analysis approaches to address routes to Ecological Intensification using agricultural Long-Term Experiments
C2 - Non-edited contributions to conferences
Mead, A., MacLaren, C. and Storkey, J. 2022. Extending meta-analysis approaches to address routes to Ecological Intensification using agricultural Long-Term Experiments. 31st International Biometric Conference. Riga, Latvia 10 Jul 2022 International Biometric Society.
Modelling Heteroskedasticity, Overdispersion and the Impacts of Climate Change for Long-Term Hay Yield Data
C2 - Non-edited contributions to conferences
Addy, J., Mead, A., Macdonald, A. J., Semenov, M. A. and Ellis, R. H. 2022. Modelling Heteroskedasticity, Overdispersion and the Impacts of Climate Change for Long-Term Hay Yield Data. 31st International Biometric Conference. Riga, Latvia 10 Jul 2022
Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration
A - Papers appearing in refereed journals
Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers , H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration. Plant Physiology. 190 (2), pp. 1365-1383. https://doi.org/10.1093/plphys/kiac245
Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials
N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. Allocation of herbage allowance to grazed dairy cows in commercial herds using global positioning and long-range wide area network - Supplementary materials. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xx
GrazeMore - milk yield data
N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - milk yield data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xw
GrazeMore - grazing intake data
N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - grazing intake data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xv
GrazeMore - grazing activity data
N - Datasets
Chamberlain, A. T., Mead, A., Rivero, M. J. and Wilkinson, J. M. 2022. GrazeMore - grazing activity data. Rothamsted Research. https://doi.org/10.23637/rothamsted.988xq
The Woburn Ley-arable experiment, 1938-2020: its management, the issues and problems that arose, and their resolution to maintain the continuity and relevance of the experiment.
D1 - Technical reports: non-confidential
Johnston, A. E., Poulton, P. R., Macdonald, A. J. and Glendining, M. J. 2022. The Woburn Ley-arable experiment, 1938-2020: its management, the issues and problems that arose, and their resolution to maintain the continuity and relevance of the experiment. https://doi.org/10.23637/wrn3-manag1938-2020-01
Changes in organic carbon to clay ratios in different soils and land uses in England and Wales over time
A - Papers appearing in refereed journals
Prout, J. M., Shepherd, K. D., McGrath, S. P., Kirk, G. J. D., Hassall, K. L. and Haefele, S. M. 2022. Changes in organic carbon to clay ratios in different soils and land uses in England and Wales over time. Scientific Reports. 12, p. 5162. https://doi.org/10.1038/s41598-022-09101-3
Rothamsted Research PhD Student Symposium 1st and 2nd March 2022 Handbook , Posters
C2 - Non-edited contributions to conferences
Mead, A. 2022. Rothamsted Research PhD Student Symposium 1st and 2nd March 2022 Handbook , Posters.
The potential of fluorescence imaging to distinguish insect pest and non-pest species
A - Papers appearing in refereed journals
Shortall, C. R., Perryman, S. A. M., Halsey, K. and West, J. S. 2022. The potential of fluorescence imaging to distinguish insect pest and non-pest species. Outlooks on Pest Management. 33 (1), pp. 13-16(4). https://doi.org/10.1564/v33_feb_05
Exploring the effects of land management change on productivity, carbon and nutrient balance: Application of an Ensemble Modelling Approach to the upper River Taw observatory, UK
A - Papers appearing in refereed journals
Hassall, K. L., Coleman, K., Dixit, P., Granger, S. J., Zhang, Y., Sharp, R., Wu, L., Whitmore, A. P., Richter, G. M., Collins, A. L. and Milne, A. E. 2022. Exploring the effects of land management change on productivity, carbon and nutrient balance: Application of an Ensemble Modelling Approach to the upper River Taw observatory, UK. Science of the Total Environment. 824, p. 153824. https://doi.org/10.1016/j.scitotenv.2022.153824
A comprehensive sugar beet virus yellows model
G - Articles in popular magazines and other technical publications
Bell, J. R. and Mead, A. 2022. A comprehensive sugar beet virus yellows model. British Sugar Beet Review. 90, pp. 12-15.
Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat
A - Papers appearing in refereed journals
Oszvald, M., Hassall, K. L., Hughes, D. J., Torres-Ballesteros, A., Clark, I. M., Riche, A. B. and Heuer, S. 2022. Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat. Frontiers in Plant Science. 13, p. 816475. https://doi.org/10.3389/fpls.2022.816475
Is it possible to attain the same soil organic matter content in arable agriculture soils as under natural vegetation?
A - Papers appearing in refereed journals
Powlson, D. S., Poulton, P. R., Glendining, M. J., Macdonald, A. J. and Goulding, K. W. T. 2022. Is it possible to attain the same soil organic matter content in arable agriculture soils as under natural vegetation? Outlook on Agriculture. 51 (1), pp. 91-104. https://doi.org/10.1177/00307270221082113
Ethylene augments root hypoxia tolerance through amelioration of reactive oxygen species and growth cessation
A - Papers appearing in refereed journals
Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers, H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek, L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance through amelioration of reactive oxygen species and growth cessation. bioRxiv. https://doi.org/10.1101/2022.01.21.477196
Long-term evidence for ecological intensification as a pathway to sustainable agriculture
A - Papers appearing in refereed journals
MacLaren, C., Mead, A., Van Balen, D., Claessens, L., Etana, A., De Haan, J., Haagsma, W., Jack, O., Keller, T., Labuschagne, J., Myrbeck, A., Necpalova, M., Nziguheba, G., Six, J., Strauss, J., Swanepoel, P. A., Thierfelder, C., Topp, C., Tshuma, F., Verstegen, H., Walker, R., Watson, C., Wesselink, M. and Storkey, J. 2022. Long-term evidence for ecological intensification as a pathway to sustainable agriculture. Nature Sustainability. 5, pp. 770-779. https://doi.org/10.1038/s41893-022-00911-x
Can the right composition and diversity of farmed species improve food security among smallholder farmers?
A - Papers appearing in refereed journals
MacLaren, C., Aliyu, K. T., Waswa, W., Storkey, J., Claessens, L., Vanlauwe, B. and Mead, A. 2022. Can the right composition and diversity of farmed species improve food security among smallholder farmers? Frontiers in Sustainable Food Systems. 6, p. 744700. https://doi.org/10.3389/fsufs.2022.744700
Impacts of field margin orientation on populations of soil-dwelling invertebrates in relation to the direction and intensity of field traffic
A - Papers appearing in refereed journals
Carlesso, L., Beadle, A., Cook, S. M., Hartwell, G., Mead, A., Ritz, K., Sparkes, D., Wu, L. and Murray, P. J. 2022. Impacts of field margin orientation on populations of soil-dwelling invertebrates in relation to the direction and intensity of field traffic. Soil Use and Management. 38 (1), pp. 1015-1032. https://doi.org/10.1111/sum.12768
The legacy effect of synthetic N fertiliser
A - Papers appearing in refereed journals
Vonk, W. J., Hijbeek, R., Glendining, M. J., Powlson, D. S., Bhogal, A., Merbach, I., Silva, J. V., Poffenbarger, H. J., Dhillon, J., Sieling, K. and Ten Berge, H. F. M. 2022. The legacy effect of synthetic N fertiliser. European Journal of Soil Science. 73 (3), p. e13238. https://doi.org/10.1111/ejss.13238
Establishing long-term nitrogen response of global cereals to assess sustainable fertilizer rates
A - Papers appearing in refereed journals
Van Grinsven, H. J. M., Ebanyat, P., Glendining, Margaret, Gu, B., Hijbeek, R., Lam, S. K., Lassaletta, L., Mueller, N. D., Pacheco, F. S., Quemada, M., Bruulsema, T. W., Jacobsen, B. H. and Ten Berge, H. F. M. 2022. Establishing long-term nitrogen response of global cereals to assess sustainable fertilizer rates. Nature Food. 3, pp. 122-132. https://doi.org/10.1038/s43016-021-00447-x
Laboratory phenomics predicts field performance and identifies superior indica haplotypes for early seedling vigour in dry direct-seeded rice
A - Papers appearing in refereed journals
Menard, G. N., Sandhu, N., Anderson, D., Catolos, M., Hassall, K. L., Eastmond, P. J., Kumar, A. and Kurup, S. 2021. Laboratory phenomics predicts field performance and identifies superior indica haplotypes for early seedling vigour in dry direct-seeded rice. Genomics. 113 (6), pp. 4227-4236. https://doi.org/10.1016/j.ygeno.2021.11.006
Revisiting strategies to incorporate gender-responsiveness into maize breeding in southern Africa
A - Papers appearing in refereed journals
Cairns, J. E., Baudron, F., Hassall, K. L., Ndhlela, T., Nyagumbo, I., McGrath, S. P. and Haefele, S. M. 2021. Revisiting strategies to incorporate gender-responsiveness into maize breeding in southern Africa. Outlook on Agriculture. 51 (2), pp. 178-182. https://doi.org/10.1177/00307270211045410
Uncovering Trait Associations Resulting in Maximal Seed Yield in Winter and Spring Oilseed Rape
A - Papers appearing in refereed journals
Siles-Suarez, L., Hassall, K. L., Sanchis-Gritsch, C., Eastmond, P. J. and Kurup, S. 2021. Uncovering Trait Associations Resulting in Maximal Seed Yield in Winter and Spring Oilseed Rape. Frontiers in Plant Science. 12 (6 September), p. 697576. https://doi.org/10.3389/fpls.2021.697576
Changes in agricultural climate in South-Eastern England from 1892 to 2016 and differences in cereal and permanent grassland yield
A - Papers appearing in refereed journals
Addy, J., Ellis, R. H., Macdonald, A. J., Semenov, M. A. and Mead, A. 2021. Changes in agricultural climate in South-Eastern England from 1892 to 2016 and differences in cereal and permanent grassland yield. Agricultural and Forest Meteorology. 308-309, p. 108560. https://doi.org/10.1016/j.agrformet.2021.108560
The grain mineral composition of barley, oat and wheat on soils with pH and soil phosphorus gradients
A - Papers appearing in refereed journals
Jordan-Meille, L., Holland, J. E., McGrath, S. P., Glendining, M. J., Thomas, C. L. and Haefele, S. M. 2021. The grain mineral composition of barley, oat and wheat on soils with pH and soil phosphorus gradients. European Journal of Agronomy. 126, p. 126281. https://doi.org/10.1016/j.eja.2021.126281
Corrigendum to “Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorus acquisition in plants” [Soil Biol. Biochem. 142 (2020) 107695]
A - Papers appearing in refereed journals
Mezeli, M. M., Page, S., George, T. S., Neilson, R., Mead, A., Blackwell, M. S. A. and Haygarth, P. M. 2021. Corrigendum to “Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorus acquisition in plants” [Soil Biol. Biochem. 142 (2020) 107695]. Soil Biology and Biochemistry. 157, p. 108145. https://doi.org/10.1016/j.soilbio.2021.108145
Identification and Expression of Secreted In Xylem Pathogenicity Genes in Fusarium oxysporum f. sp. pisi
A - Papers appearing in refereed journals
Jenkins, S., Taylor, A., Jackson, A. C., Armitage, A. D., Bates, H. J., Mead, A., Harrison, R. J. and Clarkson, J. P. 2021. Identification and Expression of Secreted In Xylem Pathogenicity Genes in Fusarium oxysporum f. sp. pisi. Frontiers in Microbiology. 12, p. 593140. https://doi.org/10.3389/fmicb.2021.593140
Contrasting Responses of Rhizosphere Bacterial, Fungal, Protist and Nematode Communities to Nitrogen Fertilisation and Crop Genotype in Field Grown Oilseed Rape (Brassica napus)
A - Papers appearing in refereed journals
Picot, E., Hale, C. C., Hilton, S., Teakle, G. R., Schafer, H., Huang, Y-J., Perryman, S. A. M., West, J. S. and Bending, G. D. 2021. Contrasting Responses of Rhizosphere Bacterial, Fungal, Protist and Nematode Communities to Nitrogen Fertilisation and Crop Genotype in Field Grown Oilseed Rape (Brassica napus). Frontiers in Sustainable Food Systems. 5 (article), p. 613269. https://doi.org/10.3389/fsufs.2021.613269
Agricultural intensification and climate change have increased the threat from weeds
A - Papers appearing in refereed journals
Storkey, J., Mead, A., Addy, J. and Macdonald, A. J. 2021. Agricultural intensification and climate change have increased the threat from weeds. Global Change Biology. 118 (2), p. e2002548117. https://doi.org/10.1111/gcb.15585
Plant Available Zinc Is Influenced by Landscape Position in the Amhara Region, Ethiopia
A - Papers appearing in refereed journals
Desta, M. K., Broadley, M. R., McGrath, S. P., Hernandez-Allica, J., Hassall, K. L., Gameda. S., Amede. T. and Haefele, S. M. 2021. Plant Available Zinc Is Influenced by Landscape Position in the Amhara Region, Ethiopia. Plants - Basel. 10 (2), p. 254. https://doi.org/10.3390/plants10020254
Reproducing analysis of Sirius model simulations of wheat yields, 1892-2016
J - Computer programs
Addy, J., Semenov, M. A. and Mead, A. 2021. Reproducing analysis of Sirius model simulations of wheat yields, 1892-2016.
Simulated wheat yields from Sirius, 1892-2016
N - Datasets
Addy, J., Semenov, M. A. and Mead, A. 2021. Simulated wheat yields from Sirius, 1892-2016.
The potential for soybean to diversify the production of plant-based protein in the UK
A - Papers appearing in refereed journals
Coleman, K., Whitmore, A. P., Hassall, K. L., Shield, I. F., Semenov, M. A., Dobermann, A., Bourhis, Y., Eskandary, A. and Milne, A. E. 2021. The potential for soybean to diversify the production of plant-based protein in the UK. Science of the Total Environment. 767, p. 144903. https://doi.org/10.1016/j.scitotenv.2020.144903
The Outstanding Scientist, R.A. Fisher: His Views on Eugenics and Race
A - Papers appearing in refereed journals
Bodmer, W., Bailey, R. A., Charlesworth, B., Eyre-Walker, A., Farewell, V., Mead, A. and Senn, S. 2021. The Outstanding Scientist, R.A. Fisher: His Views on Eugenics and Race. Heredity. https://doi.org/10.1038/s41437-020-00394-6
Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality
A - Papers appearing in refereed journals
Oddy, J., Alarcon-Reverte, R., Wilkinson, M. D., Ravet, K., Raffan, S., Minter, A., Mead, A., Elmore, J. S., Moreira de Almeida, I., Cryer, N., Halford, N. G. and Pearce, S. 2021. Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality. BMC Plant Biology. 21 (1), p. 302. https://doi.org/10.1186/s12870-021-03058-7
Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2
A - Papers appearing in refereed journals
Raffan, S., Sparks, C. A., Huttly, A. K., Hyde, L., Martignago, D., Mead, A., Hanley, S. J., Wilkinson, P., Barker, G., Edwards, K. J., Curtis, T. Y., Usher, S. L., Kosik, O. and Halford, N. G. 2021. Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2 . Plant Biotechnology Journal. 19 (8), pp. 1602-1613. https://doi.org/10.1111/pbi.13573