Computational and Analytical Sciences
| Title | Computational and Analytical Sciences |
|---|---|
| Type | Science Department |
| Institute | Rothamsted Research |
| Head | Chris Rawlings |
| Executive Assistant | Sally Murdoch |
Outputs
Sort by: Date Title
Food safety: structure and expression of the asparagine synthetase gene family of wheat
A - Papers appearing in refereed journals
Gao, R., Curtis, T. Y., Powers, S. J., Xu, H., Huang, J. and Halford, N. G. 2016. Food safety: structure and expression of the asparagine synthetase gene family of wheat. Journal of Cereal Science. 68, pp. 122-131. https://doi.org/10.1016/j.jcs.2016.01.010
Dry matter losses and greenhouse gas emissions from outside storage of short rotation coppice willow chip
A - Papers appearing in refereed journals
Whittaker, C., Yates, N. E., Powers, S. J., Misselbrook, T. H. and Shield, I. F. 2016. Dry matter losses and greenhouse gas emissions from outside storage of short rotation coppice willow chip. BioEnergy Research. 9, pp. 288-302. https://doi.org/10.1007/s12155-015-9686-y
The effects of Nosema ceranae on honey bee flight distance
G - Articles in popular magazines and other technical publications
Wells, T., Nicholls, B., Wolf, S., Groll, H., Lim, K. S., Clark, S. J., Swain, J. L., Osborne, J. L. and Haughton, A. J. 2015. The effects of Nosema ceranae on honey bee flight distance. British bee journal. (2), p. 6.
Genomewide transcriptional signatures of migratory flight activity in a globally invasive insect pest
A - Papers appearing in refereed journals
Jones, C. M., Papanicolaou, A., Mironidis, G. K., Vontas, J., Yang, Y., Lim, K. S., Oakeshott, J. G., Bass, C. and Chapman, J. W. 2015. Genomewide transcriptional signatures of migratory flight activity in a globally invasive insect pest. Molecular Ecology. 24 (19), pp. 4901-4911. https://doi.org/10.1111/mec.13362
Madera - dobry kierunek turystyczny dla alergikow
C2 - Non-edited contributions to conferences
Grinn-Gofron, A., Camacho, I. and Sadys, M. 2015. Madera - dobry kierunek turystyczny dla alergikow. Abstracts Sympozjum Aerobiologiczne: Pylek Roslin Wsrod Nas - Aspekty Fenologiczne i Zagrozenie Alergenami Pylkowymi, Szczecin, 29-30 May 2015 . pp. 18-21
Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas synringae pv tomato DC3000
A - Papers appearing in refereed journals
Lewis, L. A., Polanski, K., De Torres-Zabala, M., Jayaraman, S., Bowden, L., Moore, J., Penford, C. A., Jenkins, D. J., Hill, C., Baxter, L., Kulasekaran, S., Truman, W., Littlejohn, G., Prusinska, J., Mead, A., Steinbrenner, J., Hickman, R., Rand, D., Wild, D. L., Ott, S., Buchanan-Wollaston, V., Smirnoff, N., Beynon, J., Denby, K. and Grant, M. 2015. Transcriptional dynamics driving MAMP-triggered immunity and pathogen effector-mediated immunosuppression in Arabidopsis leaves following infection with Pseudomonas synringae pv tomato DC3000. The Plant Cell. 27, pp. 3038-3064. https://doi.org/10.1105/tpc.15.00471
Leptosphaeria maculans - an aggressive OSR pathogen and air pollutant
C2 - Non-edited contributions to conferences
Jedryczka, M., Kaczmarek, J., Dawidziuk, A., Aubertot, J. N., Latunde-Dada, A. O., West, J. S., Sadys, M., Kennedy, R., Gilski, M., Grinn-Gofron, A. and Strzelczak, A. 2015. Leptosphaeria maculans - an aggressive OSR pathogen and air pollutant. Abstracts 14th International Rapeseed Congress, Saskatoon, 5-9 July 2015 . pp. 98
Detection of flow direction in high-flying insect and songbird migrants
A - Papers appearing in refereed journals
Chapman, J. W., Nilsson, C., Lim, K. S., Backman, J., Reynolds, D. R., Alerstam, T. and Reynolds, A. M. 2015. Detection of flow direction in high-flying insect and songbird migrants. Current Biology. 25, pp. R751-R752. https://doi.org/10.1016/j.cub.2015.07.074
Distribution of lipids in the grain of wheat (cv. Hereward) determined by lipidomic analysis of milling and pearling fractions
A - Papers appearing in refereed journals
Gonzalez-Thuillier, I., Salt, L., Chope, G., Penson, S., Skeggs, P., Tosi, P., Powers, S. J., Ward, J. L., Wilde, P., Shewry, P. R. and Haslam, R. P. 2015. Distribution of lipids in the grain of wheat (cv. Hereward) determined by lipidomic analysis of milling and pearling fractions. Journal of Agricultural and Food Chemistry - JAFC. 63, pp. 10705-10716. https://doi.org/10.1021/acs.jafc.5b05289
Pollen from alder (Alnus sp.), birch (Betula sp.) and oak (Quercus sp.) in the UK originate from small woodlands
A - Papers appearing in refereed journals
Skjoth, C. A., Baker, P., Sadys, M. and Adams-Groom, B. 2015. Pollen from alder (Alnus sp.), birch (Betula sp.) and oak (Quercus sp.) in the UK originate from small woodlands. Urban Climate. 14, pp. 414-428. https://doi.org/10.1016/j.uclim.2014.09.007
Determination of Alternaria spp. habitats using 7-day volumetric spore trap, Hybrid Single Particle Lagrangian Integrated Trajectory model and geographic information system
A - Papers appearing in refereed journals
Sadys, M., Skjoth, C. A. and Kennedy, R. 2015. Determination of Alternaria spp. habitats using 7-day volumetric spore trap, Hybrid Single Particle Lagrangian Integrated Trajectory model and geographic information system. Urban Climate. 14, pp. 429-440. https://doi.org/10.1016/j.uclim.2014.08.005
Evidence for a pervasive 'idling-mode' activity template in flying and pedestrian insects
A - Papers appearing in refereed journals
Reynolds, A. M., Jones, H. B. C., Hill, J. K., Pearson, A. J., Wilson, K., Wolf, S., Lim, K. S., Reynolds, D. R. and Chapman, J. W. 2015. Evidence for a pervasive 'idling-mode' activity template in flying and pedestrian insects. Royal Society Open Science. 2, p. 150085. https://doi.org/10.1098/rsos.150085
An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota
A - Papers appearing in refereed journals
Mauchline, T. H., Chedom-Fotso, D., Chandra, G., Samuels, T., Greenaway, N., Backhaus, A., Mcmillan, V. E., Canning, G., Powers, S. J., Hammond-Kosack, K. E., Hirsch, P. R., Clark, I. M., Mehrabi, Z., Roworth, J., Burnell, J. and Malone, J. G. 2015. An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota. Environmental Microbiology. 17 (11), pp. 4764-4778. https://doi.org/10.1111/1462-2920.13038
An analysis of local wind and air mass directions and their impact on Cladosporium distribution using HYSPLIT a circular statistics
A - Papers appearing in refereed journals
Sadys, M., Kennedy, R. and Skjoth, C. A. 2015. An analysis of local wind and air mass directions and their impact on Cladosporium distribution using HYSPLIT a circular statistics. Fungal Ecology. 18, pp. 56-66. https://doi.org/10.1016/j.funeco.2015.09.006
Potential sources of airborne Alternaria spp. spores in South-west Spain
A - Papers appearing in refereed journals
Fernandez-Rodriguez, S., Sadys, M., Smith, M., Tormo-Molina, R., Skjoth, C. A., Maya-Manzano, J. M., Silva-Palacios, I. and Gonzalo-Garijo, A. 2015. Potential sources of airborne Alternaria spp. spores in South-west Spain. Science of the Total Environment. 533, pp. 165-176. https://doi.org/10.1016/j.scitotenv.2015.06.031
Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence
A - Papers appearing in refereed journals
Derbyshire, M. C., Michaelson, L. V., Parker, J., Kelly, S., Thacker, U., Powers, S. J., Bailey, A., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2015. Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence. Fungal Genetics and Biology. 82 (September), pp. 69-84. https://doi.org/10.1016/j.fgb.2015.05.008
Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots
A - Papers appearing in refereed journals
Zhang, H., Deery, M. J., Gannon, L., Powers, S. J., Lilley, K. S. and Theodoulou, F. L. 2015. Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots. Proteomics. 15 (14), pp. 2447-2457. https://doi.org/10.1002/pmic.201400530
Solanum lycopersicum AUXIN RESPONSE FACTOR 9 regulates cell division activity during early tomato fruit development
A - Papers appearing in refereed journals
De Jong, M., Wolters-Arts, M., Schimmel, B. C. J., Stultiens, C. L. M., De Groot, P. F. M., Powers, S. J., Tikunov, Y. M., Bovy, A. G., Mariani, C., Vriezen, W. H. and Rieu, I. 2015. Solanum lycopersicum AUXIN RESPONSE FACTOR 9 regulates cell division activity during early tomato fruit development. Journal of Experimental Botany. 66, pp. 3405-3416. https://doi.org/10.1093/jxb/erv152
Multiple roles of a male-specific compound in the sexual behavior of the dried bean beetle, Acanthoscelides obtectus
A - Papers appearing in refereed journals
Vuts, J., Powers, S. J., Caulfield, J. C., Pickett, J. A. and Birkett, M. A. 2015. Multiple roles of a male-specific compound in the sexual behavior of the dried bean beetle, Acanthoscelides obtectus. Journal of Chemical Ecology. 41, pp. 287-293. https://doi.org/10.1007/s10886-015-0560-3
A dense medium microwave backscattering model for the remote sensing of oil palm
A - Papers appearing in refereed journals
Teng, K. C., Koay, J. Y., Tey, S. H., Lim, K. S., Ewe, H. T. and Chuah, H. T. 2015. A dense medium microwave backscattering model for the remote sensing of oil palm. IEEE Transactions on Geoscience and Remote Sensing. 53, pp. 3250-3259. https://doi.org/10.1109/TGRS.2014.2372796
Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition
A - Papers appearing in refereed journals
Rudd, J. J., Kanyuka, K., Hassani-Pak, K., Derbyshire, M., Andongabo, A. E., Devonshire, J., Lysenko, A., Saqi, M., Desai, N. M., Powers, S. J., Hooper, J., Ambroso, L., Bharti, A., Farmer, A., Hammond-Kosack, K. E., Dietrich, R. A. and Courbot, M. 2015. Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential pathogen chromosomal contributions and a variation on the hemibiotrophic lifestyle definition. Plant Physiology. 167 (3), pp. 1158-1185. https://doi.org/10.1104/pp.114.255927
Effects of water availability on free amino acids, sugars and acrylamide-forming potential in potato
A - Papers appearing in refereed journals
Muttucumaru, N., Powers, S. J., Elmore, J. S., Mottram, D. S. and Halford, N. G. 2015. Effects of water availability on free amino acids, sugars and acrylamide-forming potential in potato. Journal of Agricultural and Food Chemistry - JAFC. 63, pp. 2566-2575. https://doi.org/10.1021/jf506031w
Fungicide resistance risk assessment based on traits associated with the rate of pathogen evolution
A - Papers appearing in refereed journals
Grimmer, M. K., Van Den Bosch, F., Powers, S. J. and Paveley, N. D. 2015. Fungicide resistance risk assessment based on traits associated with the rate of pathogen evolution. Pest Management Science. 71 (2), pp. 207-215. https://doi.org/10.1002/ps.3781
A novel approach to identify genes that determine grain protein deviation in cereals
A - Papers appearing in refereed journals
Mosleth, E. F., Wan, Y., Lysenko, A., Chope, G. A., Penson, S. P., Shewry, P. R. and Hawkesford, M. J. 2015. A novel approach to identify genes that determine grain protein deviation in cereals. Plant Biotechnology Journal. 13 (5), pp. 625-635. https://doi.org/10.1111/pbi.12285
Statistical methods in biology: design and analysis of experiments and regression
E - Books edited/written by staff member, alone/with others
Welham, S. J., Gezan, S. A., Clark, S. J. and Mead, A. 2015. Statistical methods in biology: design and analysis of experiments and regression. CRC Press, Boca Raton, Florida.
Effect of temperature, pH, carbon and nitrogen ratios on the parasitic activity of Pochonia chlamydosporia on Meloidogyne incognita
A - Papers appearing in refereed journals
Luambano, N. D., Manzanilla-Lopez, R. H., Kimenju, J. W., Powers, S. J., Narla, R. D., Wanjohi, W. J. and Kerry, B. R. 2015. Effect of temperature, pH, carbon and nitrogen ratios on the parasitic activity of Pochonia chlamydosporia on Meloidogyne incognita. Biological Control. 80, pp. 23-29. https://doi.org/10.1016/j.biocontrol.2014.09.003
Quantitative differences in gene expression of defence genes in Solanum tuberosum and S. sisymbriifolium infected with Globodera pallida
A - Papers appearing in refereed journals
Sasaki-Crawley, A., Dybal, K., Powers, S. J., Birkett, M. A., Pickett, J. A., Nelson, D., Blackshaw, R., Carvalho, R. and Curtis, R. H. C. 2014. Quantitative differences in gene expression of defence genes in Solanum tuberosum and S. sisymbriifolium infected with Globodera pallida. Indian journal of nematology. 44 (1), pp. 62-72.
Improving the predictive power of fungicide resistance risk assessment
C1 - Edited contributions to conferences/learned societies
Paveley, N., Grimmer, M., Powers, S. J. and Van Den Bosch, F. 2014. Improving the predictive power of fungicide resistance risk assessment. Dehneetal, H. W. (ed.) Modern fungicides and antifungal compounds, vol. 7 . Deutsche Phytomedizinische Gesellschaft, Braunschweig. pp. 153-160
A framework for mining life sciences data on the semantic web in an interactive, graph-based environment
B - Book chapters etc edited externally
Lysenko, A., Grzebyta, J., Hindle, M. M., Rawlings, C. J. and Splendiani, A. 2014. A framework for mining life sciences data on the semantic web in an interactive, graph-based environment. in: Formenti, E., Wit, E. and Tagliaferri, R. (ed.) Computational intelligence methods for bioinformatics and biostatistics. Lecture Notes in Computer Science, Vol. 8452 Springer, Dordrecht. pp. 225-237
Interactive exploration of integrated biological datasets using context-sensitive workflows
A - Papers appearing in refereed journals
Horn, F., Rittweger, M., Taubert, J., Lysenko, A., Rawlings, C. J. and Guthke, R. 2014. Interactive exploration of integrated biological datasets using context-sensitive workflows. Frontiers in Genetics. 5, p. 21. https://doi.org/10.3389/fgene.2014.00021
Discovering study-specific gene regulatory networks
A - Papers appearing in refereed journals
Bo, V., Curtis, T., Lysenko, A., Saqi, M., Swift, S. and Tucker, A. 2014. Discovering study-specific gene regulatory networks. PLOS ONE. 9, p. e106524. https://doi.org/10.1371/journal.pone.0106524
Systems responses to progressive water stress in durum wheat
A - Papers appearing in refereed journals
Habash, D. Z., Baudo, M., Hindle, M. M., Powers, S. J., Defoin-Platel, M., Mitchell, R. A. C., Saqi, M., Rawlings, C. J., Latiri, K., Araus, J. L., Abdulkader, A., Tuberosa, R., Lawlor, D. W. and Nachit, M. M. 2014. Systems responses to progressive water stress in durum wheat. PLOS ONE. 9, p. e108431. https://doi.org/10.1371/journal.pone.0108431
Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs
A - Papers appearing in refereed journals
Graham, N. S., Hammond, J. P., Lysenko, A., Mayes, S., O Lochlainn, S., Blasco, B., Bowen, H. C., Rawlings, C. J., Rios, J. J., Welham, S. J., Carion, P. W. C., Dupuy, L. X., King, G. J., White, P. J. and Broadley, M. R. 2014. Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs. The Plant Cell. 26, pp. 2818-2830. https://doi.org/10.1105/tpc.114.128603
Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae)
A - Papers appearing in refereed journals
Berlin, S., Trybush, S. O., Fogelqvist, J., Gyllenstrand, N., Hallingback, H. R., Ahman, I., Nordh, N-E., Shield, I. F., Powers, S. J., Weih, M., Lagercrantz, U., Ronnberg-Wastljung, A-C., Karp, A. and Hanley, S. J. 2014. Genetic diversity, population structure and phenotypic variation in European Salix viminalis L. (Salicaceae). Tree Genetics & Genomes. 10 (6), pp. 1595-1610. https://doi.org/10.1007/s11295-014-0782-5
Photosynthesis and growth in diverse willow genotypes
A - Papers appearing in refereed journals
Andralojc, P. J., Bencze, S., Madgwick, P. J., Philippe, H., Powers, S. J., Shield, I. F., Karp, A. and Parry, M. A. J. 2014. Photosynthesis and growth in diverse willow genotypes. Food and Energy Security. 3, pp. 69-85. https://doi.org/10.1002/fes3.47
So near and yet so far: harmonic radar reveals reduced homing ability of Nosema infected honeybees
A - Papers appearing in refereed journals
Wolf, S., McMahon, D. P., Lim, K. S., Pull, C. D., Clark, S. J., Paxton, R. J. and Osborne, J. L. 2014. So near and yet so far: harmonic radar reveals reduced homing ability of Nosema infected honeybees. PLOS ONE. 9, p. e103989. https://doi.org/10.1371/journal.pone.0103989
A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences
C2 - Non-edited contributions to conferences
Kanyuka, K., Lysenko, A., Saqi, M., Derbyshire, M., Andongabo, A. E., Hassani-Pak, K., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. A tale of one fungal pathogen of wheat: how it evades host surveillance and then hijacks host defences. Abstracts 16th International Congress on Molecular Plant-Microbe Interactions (IS-MPMI 2014), Rhodes, 6-10 July 2014 . pp. P069
Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction
C2 - Non-edited contributions to conferences
Kanyuka, K., Andongabo, A. E., Hassani-Pak, K., Powers, S. J., Lysenko, A., Saqi, M., Derbyshire, M., Lee, W-S., Hammond-Kosack, K. E., Courbot, M. and Rudd, J. J. 2014. Identification and analysis of differentially expressed genes in the wheat- Zymoseptoria tritici interaction. Abstracts Plant Genomics Congress, London, 12-13 May 2014 .
Assessment of core and accessory genetic variation in Rhizobium leguminosarum symbiovar trifolii strains from diverse locations and host plants using PCR-based methods
A - Papers appearing in refereed journals
Mauchline, T. H., Hayat, R., Roberts, R., Powers, S. J. and Hirsch, P. R. 2014. Assessment of core and accessory genetic variation in Rhizobium leguminosarum symbiovar trifolii strains from diverse locations and host plants using PCR-based methods. Letters in Applied Microbiology. 59 (2), pp. 238-246. https://doi.org/10.1111/lam.12270
Evaluation of a matrix to calculate fungicide resistance risk
A - Papers appearing in refereed journals
Grimmer, M. K., Van Den Bosch, F., Powers, S. J. and Paveley, N. D. 2014. Evaluation of a matrix to calculate fungicide resistance risk. Pest Management Science. 70 (6), pp. 1008-1016. https://doi.org/10.1002/ps.3646