PS: Oilseed Metabolism and Development

Title	PS: Oilseed Metabolism and Development
Type	Research cluster

Outputs

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The lowdown on breakdown: Open questions in plant proteolysis

A - Papers appearing in refereed journals

Eckardt, N. A., Wittenberg, T. A., Bassham, D. C., Chen, P., Chen, Q., Fang, J., Genschik, P., Ghifari, A. S., Guercio, A. M., Gibbs, D. J., Heese, M., Jarvis, R. P., Michaeli, S., Murcha, M. W., Mursalimov, S., Noir, S., Palayam, M., Peixoto, B., Rodriguez, P. L., Schaller, A., Schnittger, A., Serino, G., Shabek, N., Stintzi, A., Theodoulou, F. L., Üstün, S., van Wijk, K. J., Wei, N., Xie, Q., Yu, F. and Zhang, H. 2024. The lowdown on breakdown: Open questions in plant proteolysis. The Plant Cell. p. koae193. https://doi.org/10.1093/plcell/koae193

BIG enhances Arg/N-degron pathway-mediated protein degradation to regulate Arabidopsis hypoxia responses and suberin deposition

A - Papers appearing in refereed journals

Zhang, H., Rundle, C., Winter, N., Miricescu, A., Mooney B. C., Bachmair, A., Graciet, E. and Theodoulou, F. L. 2024. BIG enhances Arg/N-degron pathway-mediated protein degradation to regulate Arabidopsis hypoxia responses and suberin deposition. The Plant Cell. p. koae117. https://doi.org/10.1093/plcell/koae117

Characterisation of fatty acyl reductases of sunflower (Helianthus annuus L.) seed

A - Papers appearing in refereed journals

DeAndres-Gil, C., Moreno-Perez, A. J., Villoslada-Valbuena, M., Halsey, K., Martinez-Force, E., Garces, R., Kurup, S., Beaudoin, F., Salas, J. J. and Venegas-Caleron, M. 2024. Characterisation of fatty acyl reductases of sunflower (Helianthus annuus L.) seed. Plant Science. 341, p. 111992. https://doi.org/10.1016/j.plantsci.2024.111992

Ketocarotenoid production in tomato triggers metabolic reprogramming and cellular adaptation: The quest for homeostasis

A - Papers appearing in refereed journals

Nogueira, M., Enfissi, E. M. A., Price, E. J., Menard, G. N., Venter, E., Eastmond, P. J., Bar, E., Lewinsohn, E. and Fraser, P. D. 2023. Ketocarotenoid production in tomato triggers metabolic reprogramming and cellular adaptation: The quest for homeostasis. Plant Biotechnology Journal. 22 (2), pp. 427-444. https://doi.org/10.1111/pbi.14196

Integrating Association Mapping, Linkage Mapping, Fine Mapping with RNA Seq Conferring Seedling Vigor Improvement for Successful Crop Establishment in Deep Sown Direct-Seeded Rice

A - Papers appearing in refereed journals

Sandhu, N., Ankush, A. P., Singh, J., Raigar, O. P., Bains, S., Jindal, T., Singh, M. P., Sethi, M., Pruthi, G., Augustine, G., Verma, V. K., Goyal, S., Kumar, A., Panwar, H., Sihag, M. K., Kaur, R., Kurup, S. and Kumar, A. 2023. Integrating Association Mapping, Linkage Mapping, Fine Mapping with RNA Seq Conferring Seedling Vigor Improvement for Successful Crop Establishment in Deep Sown Direct-Seeded Rice. Rice. 16, p. 46. https://doi.org/10.1186/s12284-023-00665-w

A causal inference and Bayesian optimisation framework for modelling multi-trait relationships—Proof-of-concept using Brassica napus seed yield under controlled conditions

A - Papers appearing in refereed journals

Calderwood, A., Siles-Suarez, L., Eastmond, P. J., Kurup, S. and Morris, R. 2023. A causal inference and Bayesian optimisation framework for modelling multi-trait relationships—Proof-of-concept using Brassica napus seed yield under controlled conditions. PLOS ONE. 18 (9), p. 0290429. https://doi.org/10.1371/journal.pone.0290429

High temperature tolerance in a novel, high-quality Phaseolus vulgaris breeding line is due to maintenance of pollen viability and successful germination on the stigma

A - Papers appearing in refereed journals

Rose, T., Lowe, C., Miret, J. A., Walpole, H., Halsey, K., Venter, E., Urban, M. O., Buendia, H. F., Kurup, S., O’Sullivan, D., Beebe, S. and Heuer, S. 2023. High temperature tolerance in a novel, high-quality Phaseolus vulgaris breeding line is due to maintenance of pollen viability and successful germination on the stigma. Plants - Basel. 12 (13), p. 2491. https://doi.org/10.3390/plants12132491

Automated extraction of pod phenotype data from micro-computed tomograph

A - Papers appearing in refereed journals

Corcoran, E., Siles-Suarez, L., Kurup, S. and Ahnert, S. 2023. Automated extraction of pod phenotype data from micro-computed tomograph. Frontiers in Plant Science. 14, p. 1120182. https://doi.org/10.3389/fpls.2023.1120182

A point mutation in the kinase domain of CRK10 leads to xylem vessel collapse and activation of defence responses in Arabidopsis

A - Papers appearing in refereed journals

Piovesana, M., Wood, A. K. M., Smith, D. P., Deery, M. J., Bayliss, R., Carrera, E., Napier, J. A., Kurup, S. and Matthes, M. C. 2023. A point mutation in the kinase domain of CRK10 leads to xylem vessel collapse and activation of defence responses in Arabidopsis. Journal of Experimental Botany. 74 (10), pp. 3104-3121. https://doi.org/10.1093/jxb/erad080

Relative Protein Lifetime Measurement in Plants Using Tandem Fluorescent Protein Timers

B - Book chapters etc edited externally

Zhang, H., Linster, E., Wirtz, M. and Theodoulou, F. L. 2022. Relative Protein Lifetime Measurement in Plants Using Tandem Fluorescent Protein Timers. in: Lois, L. M. and Trujillo, M. (ed.) Plant Proteostasis New York Humana Press Inc. pp. 201-220

Burden tests can be used to map causal genes for a simple metabolic trait in an exome-sequenced polyploid mutant population

A - Papers appearing in refereed journals

Menard, G. N. and Eastmond, P. J. 2022. Burden tests can be used to map causal genes for a simple metabolic trait in an exome-sequenced polyploid mutant population. Plant Biotechnology Journal. 20 (10), pp. 1850-1852. https://doi.org/10.1111/pbi.13890

Plant proteostasis-a proven and promising target for crop improvement - Editorial

A - Papers appearing in refereed journals

Theodoulou, F. L., Orosa-Puente, B., Trujillo, M. and Rubio V. 2022. Plant proteostasis-a proven and promising target for crop improvement - Editorial. Essays in Biochemistry. 66 (2), pp. 75-85. https://doi.org/10.1042/EBC20210078

Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration

A - Papers appearing in refereed journals

Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers , H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration. Plant Physiology. 190 (2), pp. 1365-1383. https://doi.org/10.1093/plphys/kiac245

Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice

A - Papers appearing in refereed journals

Verma, L., Bhadouria, J., Bhunia, R., Singh, S., Panchal, P., Bhatia, C., Eastmond, P. J. and Giri, J. 2022. Monogalactosyl Diacylglycerol Synthase 3 (OsMGD3) affects phosphate utilization and acquisition in rice. Journal of Experimental Botany. 73 (14), pp. 5033-5051. https://doi.org/10.1093/jxb/erac192

A native promoter–gene fusion created by CRISPR/Cas9-mediated genomic deletion offers a transgene-free method to drive oil accumulation in leaves

A - Papers appearing in refereed journals

Bhunia, R. K., Menard, G. N. and Eastmond, P. J. 2022. A native promoter–gene fusion created by CRISPR/Cas9-mediated genomic deletion offers a transgene-free method to drive oil accumulation in leaves. FEBS Letters. 596 (15), pp. 1865-1870. https://doi.org/10.1002/1873-3468.14365

Diverting phenylpropanoid pathway flux from sinapine to produce industrially useful 4-vinyl derivatives of hydroxycinnamic acids in Brassicaceous oilseeds

A - Papers appearing in refereed journals

Menard, G. N., Langdon, M., Bhunia, R., Shankhapal, A., Noleto-Dias, C., Lomax, C., Ward, J. L., Kurup, S. and Eastmond, P. J. 2022. Diverting phenylpropanoid pathway flux from sinapine to produce industrially useful 4-vinyl derivatives of hydroxycinnamic acids in Brassicaceous oilseeds. Metabolic Engineering. 70, pp. 196-205. https://doi.org/10.1016/j.ymben.2022.01.016

Ethylene augments root hypoxia tolerance through amelioration of reactive oxygen species and growth cessation

A - Papers appearing in refereed journals

Liu, Z., Hartman, S., Van Veen, H., Zhang, H., Leeggangers, H. A. C. F., Martopawiro, S., Bosman, F., De Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K. L., Bailey-Serres, J., Theodoulou, F. L., Voesenek, L. A. C. J. and Sasidharan, R. 2022. Ethylene augments root hypoxia tolerance through amelioration of reactive oxygen species and growth cessation. bioRxiv. https://doi.org/10.1101/2022.01.21.477196

Production of human milk fat substitute by engineered strains of Yarrowia lipolytica

A - Papers appearing in refereed journals

Bhutada, G., Menard, G. N., Bhunia, R. K., Hapeta, P. P., Ledesma-Amaro, R. and Eastmond, P. J. 2022. Production of human milk fat substitute by engineered strains of Yarrowia lipolytica. Metabolic Engineering Communications. 14 (June), p. e00192. https://doi.org/10.1016/j.mec.2022.e00192

Laboratory phenomics predicts field performance and identifies superior indica haplotypes for early seedling vigour in dry direct-seeded rice

A - Papers appearing in refereed journals

Menard, G. N., Sandhu, N., Anderson, D., Catolos, M., Hassall, K. L., Eastmond, P. J., Kumar, A. and Kurup, S. 2021. Laboratory phenomics predicts field performance and identifies superior indica haplotypes for early seedling vigour in dry direct-seeded rice. Genomics. 113 (6), pp. 4227-4236. https://doi.org/10.1016/j.ygeno.2021.11.006

Uncovering Trait Associations Resulting in Maximal Seed Yield in Winter and Spring Oilseed Rape

A - Papers appearing in refereed journals

Siles-Suarez, L., Hassall, K. L., Sanchis-Gritsch, C., Eastmond, P. J. and Kurup, S. 2021. Uncovering Trait Associations Resulting in Maximal Seed Yield in Winter and Spring Oilseed Rape. Frontiers in Plant Science. 12 (6 September), p. 697576. https://doi.org/10.3389/fpls.2021.697576

Production of the infant formula ingredient 1,3-olein-2-palmitin in Arabidopsis thaliana seeds

A - Papers appearing in refereed journals

Eastmond, P. J., Van-Erp, H., Bryant, F. M., Martin-Moreno, J. and Michaelson, L. V. 2021. Production of the infant formula ingredient 1,3-olein-2-palmitin in Arabidopsis thaliana seeds. Metabolic Engineering. 67, pp. 67-74. https://doi.org/10.1016/j.ymben.2021.05.009

Allele mining in diverse accessions of tropical grasses to improve forage quality and reduce environmental impact

A - Papers appearing in refereed journals

Hanley, S. J., Pellny, T. K., De Vega, J. J., Castiblanco, V., Arango, J., Eastmond, P. J., Heslop-Harrison, J. S. and Mitchell, R. A. C. 2021. Allele mining in diverse accessions of tropical grasses to improve forage quality and reduce environmental impact. Annals of Botany. 128 (5), pp. 627-637. https://doi.org/10.1093/aob/mcab101

The Saccharomyces cerevisiae ABCD subfamily transporter Pxa1/Pxa2p co-imports CoASH into the peroxisome

A - Papers appearing in refereed journals

Van Roermund, C. W. T., IJlst, L., Baker, A., Wanders, R. J. A., Theodoulou, F. L. and Waterham, H. R. 2020. The Saccharomyces cerevisiae ABCD subfamily transporter Pxa1/Pxa2p co-imports CoASH into the peroxisome. FEBS Letters. https://doi.org/10.1002/1873-3468.13974

Characterisation of bird cherry-oat aphid (Rhopalosiphum padi L.) behaviour and aphid host preference in relation to partially resistant and susceptible wheat landraces

A - Papers appearing in refereed journals

Singh, B., Simon, A. L., Halsey, K., Kurup, S., Clark, S. J. and Aradottir, G. I. 2020. Characterisation of bird cherry-oat aphid (Rhopalosiphum padi L.) behaviour and aphid host preference in relation to partially resistant and susceptible wheat landraces. Annals of Applied Biology - AAB. 177 (2), pp. 184-194. https://doi.org/10.1111/aab.12616

Turning sugar into oil - making photosynthesis blind to feedback inhibition

A - Papers appearing in refereed journals

Paul, M. J. and Eastmond, P. J. 2020. Turning sugar into oil - making photosynthesis blind to feedback inhibition. Journal of Experimental Botany. 71 (7), pp. 2216-2218. https://doi.org/10.1093/jxb/erz504

Big data from small tissue extraction of high-quality RNA for RNA-Sequencing from different oilseed Brassica seed tissues during seed development

A - Papers appearing in refereed journals

Siles-Suarez, L., Eastmond, P. J. and Kurup, S. 2020. Big data from small tissue extraction of high-quality RNA for RNA-Sequencing from different oilseed Brassica seed tissues during seed development . Plant Methods. 16, p. 80. https://doi.org/10.1186/s13007-020-00626-0

Down‐regulation of key genes involved in carbon metabolism in Medicago truncatula results in increased lipid accumulation in vegetative tissue

A - Papers appearing in refereed journals

Wijekoon, C., Singer, S. D., Weselake, R. J., Petrie, J. R., Chen, G., Singh, S., Eastmond, P. J. and Acharya, S. N. 2020. Down‐regulation of key genes involved in carbon metabolism in Medicago truncatula results in increased lipid accumulation in vegetative tissue . Crop Science. 60 (4), pp. 1798-1808. https://doi.org/10.1002/csc2.20124

DES2 is a fatty acid Delta 11 desaturase capable of synthesizing palmitvaccenic acid in the arbuscular mycorrhizal fungus Rhizophagus irregularis

A - Papers appearing in refereed journals

Cheeld, H., Bhutada, G., Beaudoin, F. and Eastmond, P. J. 2020. DES2 is a fatty acid Delta 11 desaturase capable of synthesizing palmitvaccenic acid in the arbuscular mycorrhizal fungus Rhizophagus irregularis. FEBS Letters. https://doi.org/10.1002/1873-3468.13762

Identification of a Δ11 desaturase from the arbuscular mycorrhizal fungus Rhizophagus irregularis

A - Papers appearing in refereed journals

Cheeld, H., Bhutada, G., Beaudoin, F. and Eastmond, P. J. 2020. Identification of a Δ11 desaturase from the arbuscular mycorrhizal fungus Rhizophagus irregularis. bioRxiv. https://doi.org/10.1101/2020.01.13.903815

Enhancement of total lipid production in vegetative tissues of alfalfa and sainfoin using chemical mutagenesis

A - Papers appearing in refereed journals

Wijekoon, C. P., Singer, S. D., Weselake, R. J., Petrie, J. R., Singh, S., Jayawardhane, K. N., Shah, S., Chen, G., Eastmond, P. J. and Acharya, S. N. 2019. Enhancement of total lipid production in vegetative tissues of alfalfa and sainfoin using chemical mutagenesis. Crop Science. 60 (6), pp. 2990-3003. https://doi.org/10.1002/csc2.20027

The Arabidopsis thaliana N-recognin E3 ligase PROTEOLYSIS1 influences the immune response.

A - Papers appearing in refereed journals

Till, C. J., Vicente, J., Zhang, H., Oszvald, M., Deery, M. J., Pastor, V., Lilley, K. S., Ray, R. V., Theodoulou, F. L. and Holdsworth, M. J. 2019. The Arabidopsis thaliana N-recognin E3 ligase PROTEOLYSIS1 influences the immune response. Plant Direct. 3 (12), p. e00194. https://doi.org/10.1002/pld3.194

The impact of reducing fatty acid desaturation on the composition and thermal stability of rapeseed oil

A - Papers appearing in refereed journals

Kaur, H., Wang, L., Stawniak, N., Sloan, R., Van-Erp, H., Eastmond, P. J. and Bancroft, I. 2019. The impact of reducing fatty acid desaturation on the composition and thermal stability of rapeseed oil . Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13263

Engineering the stereoisomeric structure of seed oil to mimic human milk fat

A - Papers appearing in refereed journals

Van-Erp, H., Bryant, F. M., Martin-Moreno, J., Michaelson, L. V., Bhutada, G. and Eastmond, P. J. 2019. Engineering the stereoisomeric structure of seed oil to mimic human milk fat. Proceedings of the National Academy of Sciences. 116 (42), pp. 20947-20952. https://doi.org/10.1073/pnas.1907915116

Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress

A - Papers appearing in refereed journals

Hartman, S., Liu, Z., van Veen, H., Vicente, J., Reinen, E., Martopawiro, S., Zhang, H., van Dongen, N., Bosman, F., Bassel, G. W., Visser, E. J. W., Bailey-Serres, J., Theodoulou, F. L., Hebelstrup, K. H., Gibbs, D. J., Holdsworth, M. J., Sasidharan, R. and Vosenek, L. A. C. J. 2019. Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress. Nature Communications. 10 (4020). https://doi.org/10.1038/s41467-019-12045-4

Mutagenesis separates ATPase and thioesterase activities of the peroxisomal ABC transporter, Comatose

A - Papers appearing in refereed journals

Carrier, D., van Roermund, C., Schaedler, T. A., Rong, H., Ijlist, L., Wanders, r., Baldwin, S., Waterham, H., Theodoulou, F. L. and Baker, A. 2019. Mutagenesis separates ATPase and thioesterase activities of the peroxisomal ABC transporter, Comatose. Scientific Reports. 9. https://doi.org/10.1038/s41598-019-46685-9

Basic LEUCINE ZIPPER TRANSCRIPTION FACTOR 67 transactivates DELAY OF GERMINATION 1 to establish primary seed dormancy in Arabidopsis

A - Papers appearing in refereed journals

Bryant, F. M., Hughes, D. J., Hassani-Pak, K. and Eastmond, P. J. 2019. Basic LEUCINE ZIPPER TRANSCRIPTION FACTOR 67 transactivates DELAY OF GERMINATION 1 to establish primary seed dormancy in Arabidopsis. The Plant Cell. https://doi.org/10.1105/tpc.18.00892

Tandem fluorescent protein timers for non-invasive relative protein lifetime measurement in plants

A - Papers appearing in refereed journals

Zhang, H., Linster, E., Gannon, L., Leemhuis, W., Rundle, C., Theodoulou, F. L. and Wirtz, M. 2019. Tandem fluorescent protein timers for non-invasive relative protein lifetime measurement in plants. Plant Physiology. https://doi.org/10.1104/pp.19.00051

Natural variation in acyl editing is a determinant of seed storage oil composition

A - Papers appearing in refereed journals

Menard, G. N., Bryant, F. M., Kelly, A. A., Craddock, C. P., Lavagi, I., Hassani-Pak, K., Kurup, S. and Eastmond, P. J. 2018. Natural variation in acyl editing is a determinant of seed storage oil composition. Scientific Reports. 8, p. 17346. https://doi.org/10.1038/s41598-018-35136-6

Genetic interactions between ABA signalling and the Arg/N-end rule pathway during Arabidopsis seedling establishment

A - Papers appearing in refereed journals

Zhang, H., Gannon, L., Jones, P. D., Rundle, C. A., Hassall, K. L., Gibbs, D. J., Holdsworth, M. J. and Theodoulou, F. L. 2018. Genetic interactions between ABA signalling and the Arg/N-end rule pathway during Arabidopsis seedling establishment. Scientific Reports. 8, p. 15192. https://doi.org/10.1038/s41598-018-33630-5

BIG regulates dynamic adjustment of circadian period in Arabidopsis thaliana

A - Papers appearing in refereed journals

Hearn, T. J, Marti, M. C., Abdul-Awal, S. M., Wimalasekera, R., Stanton, C. R., Haydon, M. J., Theodoulou, F. L., Hannah, M. A. and Webb, A. A. R. 2018. BIG regulates dynamic adjustment of circadian period in Arabidopsis thaliana. Plant Physiology. 178, pp. 358-371. https://doi.org/10.1104/pp.18.00571