PS: Resilience and Development
| Title | PS: Resilience and Development |
|---|---|
| Type | Research cluster |
Outputs
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Managing Acrylamide at the Agricultural Stage: Variety Selection, Crop Management, and the Prospects for Solving the Acrylamide Problem Through Plant Breeding and Biotechnology
B - Book chapters etc edited externally
Halford, N. G. 2018. Managing Acrylamide at the Agricultural Stage: Variety Selection, Crop Management, and the Prospects for Solving the Acrylamide Problem Through Plant Breeding and Biotechnology. in: Encyclopedia of Food Chemistry, Volume 1 Elsevier. pp. 559–568
Response of cell wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus
A - Papers appearing in refereed journals
Hyde, L. S., Pellny, T. K., Freeman, J., Michaelson, L. V., Simister, R., McQueen-Mason, S. J. and Mitchell, R. A. C. 2018. Response of cell wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus . Planta. 248 (5), pp. 1213-1229. https://doi.org/10.1007/s00425-018-2968-9
Reference gene selection for quantitative RT-PCR normalisation in barley under low nitrogen
A - Papers appearing in refereed journals
Chen, Z., Li, Y., Liu, C., Wang, Y., He, T., Guo, G., Fang, C., Gao, R., Xu, H., Zhou, L., Huang, J., Halford, N. G. and Lu, R. 2018. Reference gene selection for quantitative RT-PCR normalisation in barley under low nitrogen. Journal of Cereal Science. 82 (July), pp. 213-215. https://doi.org/10.1016/j.jcs.2018.06.014
Crop Biotechnology: Genetic Modification and Genome Editing
E - Books edited/written by staff member, alone/with others
Halford, N. G. 2018. Crop Biotechnology: Genetic Modification and Genome Editing. London World Scientific Publ Co Pte Ltd.
The Role of Trehalose 6-Phosphate in Crop Yield and Resilience
A - Papers appearing in refereed journals
Paul, M. J., Gonzalez-Uriarte, A., Griffiths, C. A. and Hassani-Pak, K. 2018. The Role of Trehalose 6-Phosphate in Crop Yield and Resilience. Plant Physiology. 177, pp. 12-23. https://doi.org/10.1104/pp.17.01634
Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice
A - Papers appearing in refereed journals
Sharma, N., Tang, T. M., Singh, N., Ruzicic, S., Mueller-Roeber, B., Baumann, U. and Heuer, S. 2018. Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice. Rice. 11 (2). https://doi.org/10.1186/s12284-017-0192-z
Trehalose 6-phosphate regulates photosynthesis and assimilate partitioning in reproductive tissue
A - Papers appearing in refereed journals
Paul, M. J., Oszvald, M., Primavesi, L. F. and Griffiths, C. A. 2018. Trehalose 6-phosphate regulates photosynthesis and assimilate partitioning in reproductive tissue. Plant Physiology. 176 (2). https://doi.org/10.1104/pp.17.01673
Where are the drought tolerant crops? An assessment of more than two decades of plant biotechnology effort in crop improvement
A - Papers appearing in refereed journals
Nuccio, M. L., Paul, M. J., Bate, N. J., Cohn, J. and Cutler, S. R. 2018. Where are the drought tolerant crops? An assessment of more than two decades of plant biotechnology effort in crop improvement. Plant Science. 273 (August), pp. 110-119. https://doi.org/10.1016/j.plantsci.2018.01.020
Are GM Crops for Yield and Resilience Possible?
A - Papers appearing in refereed journals
Paul, M. J., Nuccio, M. L. and Basu, S. S. 2018. Are GM Crops for Yield and Resilience Possible? Trends in Plant Science. 23 (1), pp. 10-16. https://doi.org/10.1016/j.tplants.2017.09.007
Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici
A - Papers appearing in refereed journals
Saintennac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R., Marande, W., Powers, S. J., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2018. Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici. Nature Genetics. 50, pp. 368-374. https://doi.org/10.1038/s41588-018-0051-x
Construction of a network describing asparagine metabolism in plants and its application to the identification of genes affecting asparagine metabolism in wheat under drought and nutritional stress
A - Papers appearing in refereed journals
Curtis, T. Y., Bo, V., Tucker A. and Halford, N. G. 2018. Construction of a network describing asparagine metabolism in plants and its application to the identification of genes affecting asparagine metabolism in wheat under drought and nutritional stress. Food and Energy Security. 7 (1), p. e00126. https://doi.org/10.1002/fes3.126
Genomic, biochemical and modelling analyses of asparagine synthetases from wheat
A - Papers appearing in refereed journals
Xu, H., Curtis, T. Y., Powers, S. J., Raffan, S., Gao, R., Huang, J., Heiner, M., Gilbert, D. R. and Halford, N. G. 2018. Genomic, biochemical and modelling analyses of asparagine synthetases from wheat. Frontiers in Plant Science. 8, p. 2237. https://doi.org/10.3389/fpls.2017.02237
The early inflorescence of Arabidopsis thaliana demonstrates positional effects in floral organ growth and meristem patterning
A - Papers appearing in refereed journals
Plackett, A. R. G., Powers, S. J., Phillips, A. L., Wilson, Z. A., Hedden, P. and Thomas, S. G. 2018. The early inflorescence of Arabidopsis thaliana demonstrates positional effects in floral organ growth and meristem patterning. Plant Reproduction. 31 (2), pp. 171-191. https://doi.org/10.1007/s00497-017-0320-3
Exploring traditional aus-type for metabolites conferring drought tolerance
A - Papers appearing in refereed journals
Casartelli, A., Riewe, D., Hubberten, H. M., Altmann, T., Hoefgen, R. and Heuer, S. 2018. Exploring traditional aus-type for metabolites conferring drought tolerance. Rice. 11, p. 9. https://doi.org/10.1186/s12284-017-0189-7
Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility
A - Papers appearing in refereed journals
De Souza, W. R., Martins, P. K., Freeman, J., Pellny, T. K., Michaelson, L. V., Sampaio, B. L., Vinecky, F., Ribeiro, A. P., Da Cunha, B. A. D. B., Kobayashi, A. K., De Oliveira, P. A., Campanha, R. B., Pacheco, T. F., Martarello, D. C. I., Marchiosi, R., Ferrarese-Filho, O., Dos Santos, W. D., Tramontina, R., Squina, F. M., Centeno, D. C., Gaspar, M., Braga, M. R., Tine, M. A. S., Ralph, J., Mitchell, R. A. C. and Molinari, H. B. C. 2018. Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility. New Phytologist. 218 (1), pp. 81-93. https://doi.org/10.1111/nph.14970
The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion
A - Papers appearing in refereed journals
Bledsoe, S. W., Henry, C., Griffiths, C. A., Paul, M. J., Feil, R., Lunn, J. E., Stitt, M. and Lagrimini, L. M. 2017. The role of Tre6P and SnRK1 in maize early kernel development and events leading to stress-induced kernel abortion. BMC Plant Biology. 17 (1), p. 74. https://doi.org/10.1186/s12870-017-1018-2
Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat
C2 - Non-edited contributions to conferences
Saintenac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R. A., Marande, W., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2017. Stb6 is a wall-associated kinase gene that provides gene-for gene resistance against Zymoseptoria tritici in wheat. Plant and animal genome conferernce XXV, Dan-Diego CA, USA, 14-18 January 2017. pp. Paper 23713
Characterization of a Wheat Breeders’ Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum)
A - Papers appearing in refereed journals
Allen, A. M., Winfield, M. O., Burridge, A. J., Downie, R. C., Benbow, H. R., Barker, G. L. A., Wilkinson, P. A., Coghill, J., Waterfall, C., Davassi, A., Scopes, G., Pirani, A., Webster, T., Brew, F., Bloor, C., Griffiths, S., Bentley, A. R., Alda, M., Jack, P., Phillips, A. L. and Edwards, K. J. 2017. Characterization of a Wheat Breeders’ Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum). Plant Biotechnology Journal. 15 (3), pp. 390-401. https://doi.org/10.1111/pbi.12635
Targeting carbon for crop yield and drought resilience
A - Papers appearing in refereed journals
Griffiths, C. A. and Paul, M. J. 2017. Targeting carbon for crop yield and drought resilience. Journal of the Science of Food and Agriculture. 97 (14), pp. 4663-4671. https://doi.org/10.1002/jsfa.8501
Spatiotemporal expression patterns of wheat amino acid transporters reveal their putative roles in nitrogen transport and responses to abiotic stress
A - Papers appearing in refereed journals
Wan, Y., King, R., Mitchell, R. A. C., Hassani-Pak, K. and Hawkesford, M. J. 2017. Spatiotemporal expression patterns of wheat amino acid transporters reveal their putative roles in nitrogen transport and responses to abiotic stress. Scientific Reports. 7 (1), p. 5461. https://doi.org/10.1038/s41598-017-04473-3
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
A - Papers appearing in refereed journals
Clavijo, B. J., Venturini, L., Schudoma, C., Accinelli, G. G., Kaithakottil, G., Wright, J., Borrill, P., Kettleborough, G., Heavens, D., Chapman, H., Lipscombe, J., Barker, T., Lu, F. H., McKenzie, N., Raats, D., Ramirez-Gonzalez, R. H., Coince, A., Peel, N., Percival-Alwyn, L., Duncan, O., Trosch, J., Yu, G. T., Bolser, D. M., Namaati, G., Kerhornou, A., Spannagl, M., Gundlach, H., Haberer, G., Davey, R. P., Fosker, C., Di Palma, F., Phillips, A. L., Millar, A. H., Kersey, P. J., Uauy, C., Krasileva, K. V., Swarbreck, D., Bevan, M. W. and Clark, M. D. 2017. An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations. Genome Research. 27 (5), pp. 885-896. https://doi.org/10.1101/gr.217117.116
The Gsp-1 genes encode the wheat arabinogalactan peptide
C2 - Non-edited contributions to conferences
Wilkinson, M. D., Tosi, P., Lovegrove, A., Corol, D. I., Ward, J. L., Palmer, R., Powers, S., Passmore, D., Webster, G., Marcus, S. E., Knox, J. P. and Shewry, P. R. 2017. The Gsp-1 genes encode the wheat arabinogalactan peptide. Quality and Nutrition at MonoGram 2017, 4-6 April 2017, University of Bristol, Bristol , UK (oral presentation). pp. p10
Increasing crop yield and resilience with trehalose 6-phosphate: targeting a feast-famine mechanism in cereals for better source-sink optimisation
A - Papers appearing in refereed journals
Paul, M. J., Oszvald, M., Jesus, C., Rajulu, C. and Griffiths, C. A. 2017. Increasing crop yield and resilience with trehalose 6-phosphate: targeting a feast-famine mechanism in cereals for better source-sink optimisation. Journal of Experimental Botany. 68 (16), pp. 4455-4462. https://doi.org/10.1093/jxb/erx083
Opportunities for research via wheat transformation
C2 - Non-edited contributions to conferences
Sparks, C. A., Martignago, D., Huttly, A. K., Raffan, S., Doherty, A. and Edwards, K. 2017. Opportunities for research via wheat transformation. The 5th Plant Genomics and Gene Editing Congress, Amsterdam, 16–17 March 2017. Societas Physiologiae Plantarum Scandinavica.
Feruloylation and structure of arabinoxylan in wheat endosperm cell walls from RNAi lines with suppression of genes responsible for backbone synthesis and decoration
A - Papers appearing in refereed journals
Freeman, J., Ward, J. L., Kosik, O., Lovegrove, A., Wilkinson, M. D., Shewry, P. R. and Mitchell, R. A. C. 2017. Feruloylation and structure of arabinoxylan in wheat endosperm cell walls from RNAi lines with suppression of genes responsible for backbone synthesis and decoration. Plant Biotechnology Journal. 15 (11), pp. 1429-1438. https://doi.org/10.1111/pbi.12727
The Gsp-1 genes encode the wheat arabinogalactan peptide
A - Papers appearing in refereed journals
Wilkinson, M. D., Tosi, P., Lovegrove, A., Corol, D. I., Ward, J. L., Palmer, R., Powers, S. J., Passmore, D., Webster, G., Marcus, S. E., Knox, J. P. and Shewry, P. R. 2017. The Gsp-1 genes encode the wheat arabinogalactan peptide. Journal of Cereal Science. 74 (March), pp. 155-164. https://doi.org/10.1016/j.jcs.2017.02.006
Novel Rht-1 dwarfing genes: tools for wheat breeding and dissecting the function of DELLA proteins
A - Papers appearing in refereed journals
Thomas, S. G. 2017. Novel Rht-1 dwarfing genes: tools for wheat breeding and dissecting the function of DELLA proteins. Journal of Experimental Botany. 68 (3), pp. 354-358. https://doi.org/10.1093/jxb/erw509
Uncovering hidden variation in polyploid wheat
A - Papers appearing in refereed journals
Krasileva, K. V., Vasquez-Gross, H. A., Howell, T., Bailey, P., Paraiso, F., Clissold, L., Simmonds, J., Ramirez-Gonzalez, R. H., Wang, X. D., Borrill, P., Fosker, C., Ayling, S., Phillips, A. L., Uauy, C. and Dubcovsky, J. 2017. Uncovering hidden variation in polyploid wheat. Proceedings of the National Academy of Sciences. 114 (6), pp. E913-E921. https://doi.org/10.1073/pnas.1619268114
mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach
A - Papers appearing in refereed journals
Acevedo-Garcia, J., Spencer, D., Thieron, H., Reinstädler, A., Hammond-Kosack, K. E., Phillips, A. L. and Panstruga, R. 2017. mlo-based powdery mildew resistance in hexaploid bread wheat generated by a non-transgenic TILLING approach. Plant Biotechnology Journal. 15 (3). https://doi.org/10.1111/pbi.12631
Acrylamide-forming potential of potatoes grown at different locations, and the ratio of free asparagine to reducing sugars at which free asparagine becomes a limiting factor for acrylamide formation
A - Papers appearing in refereed journals
Muttucumaru, N., Powers, S. J., Elmore, J. S., Dodson, A., Briddon, A., Mottram, D. S. and Halford, N. G. 2017. Acrylamide-forming potential of potatoes grown at different locations, and the ratio of free asparagine to reducing sugars at which free asparagine becomes a limiting factor for acrylamide formation. Food Chemistry. 220 (1 April), pp. 76-86. https://doi.org/10.1016/j.foodchem.2016.09.199
Triticum aestivum cultivar Spark asparagine synthetase-1 (ASN1) mRNA, complete cds
K - Protein or DNA sequences submitted to database
Xu, H., Curtis, T. Y., Powers, S. J., Raffan, S., Gao, R., Huang, J., Heiner, M., Gilbert, D. and Halford, N. G. 2017. Triticum aestivum cultivar Spark asparagine synthetase-1 (ASN1) mRNA, complete cds.
Secale cereale glutamine synthetase-1 (GS1-1) mRNA, partial cds
K - Protein or DNA sequences submitted to database
Curtis, T., Halford, N. G. and Raffan, S. 2017. Secale cereale glutamine synthetase-1 (GS1-1) mRNA, partial cds.
Triticum aestivum cultivar Spark asparagine synthetase-2 (ASN2) mRNA, complete cds
K - Protein or DNA sequences submitted to database
Halford, N. G. 2017. Triticum aestivum cultivar Spark asparagine synthetase-2 (ASN2) mRNA, complete cds.
Triticum aestivum cultivar Spark asparagine synthetase-3 (ASN3) mRNA, complete cds
K - Protein or DNA sequences submitted to database
Xu, H., Curtis, T. Y., Powers, S. J., Raffan, S., Gao, R., Huang, J., Heiner, M., Gilbert, D. and Halford, N. G. 2017. Triticum aestivum cultivar Spark asparagine synthetase-3 (ASN3) mRNA, complete cds.
Exogenous trehalose improves growth under limiting nitrogen through upregulation of nitrogen metabolism
A - Papers appearing in refereed journals
Paul, M. J., Lin, Y., Zhang, J., Chen, Y., Li, H., Lawlor, D. W. and Pan, W. 2017. Exogenous trehalose improves growth under limiting nitrogen through upregulation of nitrogen metabolism . BMC Plant Biology. 17, p. 247. https://doi.org/10.1186/s12870-017-1207-z
Europe tightens the screw on acrylamide in food
G - Articles in popular magazines and other technical publications
Halford, N. G. 2017. Europe tightens the screw on acrylamide in food. Food & Beverage News.
Remobilisation of phosphorus fractions in rice flag leaves during grain filling: Implications for photosynthesis and grain yields
A - Papers appearing in refereed journals
Jeong, K., Julia, C. C., Water, D. L. E., Pantoja, O., Wissuwa, M., Heuer, S., Liu, L. and Rose, T. J. 2017. Remobilisation of phosphorus fractions in rice flag leaves during grain filling: Implications for photosynthesis and grain yields. PLOS ONE. 12 (11), p. e0187521. https://doi.org/10.1371/journal.pone.0187521
Acrylamide levels in potato crisps in Europe from 2002 to 2016
A - Papers appearing in refereed journals
Powers, S. J., Curtis, A, Mottram, D. S. and Halford, N. G. 2017. Acrylamide levels in potato crisps in Europe from 2002 to 2016. Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment. 34 (12), pp. 2085-2100. https://doi.org/10.1080/19440049.2017.1379101
Understanding the role of gibberellin signalling in wheat anther development during heat stress
F - Theses
Audley, M. 2016. Understanding the role of gibberellin signalling in wheat anther development during heat stress. F - Theses Plant Sciences
Metabolite transport and associated sugar signalling systems underpinning source/sink interactions
A - Papers appearing in refereed journals
Griffiths, C. A., Paul, M. J. and Foyer, C. H. 2016. Metabolite transport and associated sugar signalling systems underpinning source/sink interactions. Biochimica et Biophysica Acta (BBA) - Bioenergetics. 1857 (10), pp. 1715-25. https://doi.org/10.1016/j.bbabio.2016.07.007