Intelligent Data Ecosystems
| Title | Intelligent Data Ecosystems |
|---|---|
| Type | Science Department |
| Institute | Rothamsted Research |
| Head | Chris Baker |
| Executive Assistant | Sally Murdoch |
Outputs
Sort by: Date Title
High-quality, haplotype-phased de novo assembly of the highly heterozygous fig genome, a major genetic resource for fig breeding
C1 - Edited contributions to conferences/learned societies
Usai, G., Mascagni, F., Giordani, T., Vangelisti, A., Bosi, E., Zuccolo, A., Ceccarelli, M., King, R., Hassani-Pak, K., Solorzano, L. S., Cavallini, A. and Natali, L. 2021. High-quality, haplotype-phased de novo assembly of the highly heterozygous fig genome, a major genetic resource for fig breeding. International Society of Horticultural Science (ISHS). https://doi.org/10.17660/ActaHortic.2021.1310.4
Soil methane (CH4) fluxes in cropland with permanent pasture and riparian buffer strips with different vegetation
A - Papers appearing in refereed journals
Dlamini, J., Cardenas, L. M., Tesfamariam, E. H., Dunn, R. M., Hawkins, J. M. B., Blackwell, M. S. A., Evans, J. and Collins, A. L. 2021. Soil methane (CH4) fluxes in cropland with permanent pasture and riparian buffer strips with different vegetation. Journal of Plant Nutrition and Soil Science. https://doi.org/10.1002/jpln.202000473
Comparative compositions of metabolites and dietary fibre components in doughs and breads produced from bread wheat, emmer and spelt and using yeast and sourdough processes.
A - Papers appearing in refereed journals
Shewry, P. R., America, A. H. P., Lovegrove, A., Wood, A., Plummer, A., Evans, J., Van den Broeck, H. C., Gilissen, L., Mumm, R., Ward, J. L., Proos, Z., Kuiper, P., Longin, C. F. H., Andersson, A. A. M., Van Straaten, J. P., Jonkers, D. and Brouns, F. 2021. Comparative compositions of metabolites and dietary fibre components in doughs and breads produced from bread wheat, emmer and spelt and using yeast and sourdough processes. Food Chemistry. 374 (16 April 2022), p. 131710. https://doi.org/10.1016/j.foodchem.2021.131710
Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America
A - Papers appearing in refereed journals
Gaines, T., Slavov, G., Hughes, D. J., Kupper, A., Sparks, C., Oliva, J., Vila-Aiub, M., Alejandro Garcia, M., Aldo Merotto Jr and Neve, P. 2021. Investigating the origins and evolution of a glyphosate-resistant weed invasion in South America. Molecular Ecology. 30 (21), pp. 5360-5372. https://doi.org/10.1111/mec.16221
Land management legacy affects abundance and function of the acdS gene in wheat root associated pseudomonads
A - Papers appearing in refereed journals
Ruscoe, H., Taketani, R., Clark, I. M., Lund, G., Hughes, D. J., Dodd, I., Hirsch, P. R. and Mauchline, T. H. 2021. Land management legacy affects abundance and function of the acdS gene in wheat root associated pseudomonads. Frontiers in Microbiology. 12, p. 611339. https://doi.org/10.3389/fmicb.2021.611339
Uncovering Trait Associations Resulting in Maximal Seed Yield in Winter and Spring Oilseed Rape
A - Papers appearing in refereed journals
Siles-Suarez, L., Hassall, K. L., Sanchis-Gritsch, C., Eastmond, P. J. and Kurup, S. 2021. Uncovering Trait Associations Resulting in Maximal Seed Yield in Winter and Spring Oilseed Rape. Frontiers in Plant Science. 12 (6 September), p. 697576. https://doi.org/10.3389/fpls.2021.697576
Agrochemicals interact synergistically to increase bee mortality
A - Papers appearing in refereed journals
Siviter, H., Bailes, E. J., Martin, C. D., Oliver, T., Koricheva, J., Leadbeater, E. and Brown, M. J. F. 2021. Agrochemicals interact synergistically to increase bee mortality. Nature. 596, pp. 389-392. https://doi.org/10.1038/s41586-021-03787-7
The distribution of soil micro-nutrients and the effects on herbage micro-nutrient uptake and yield in three different pasture systems
A - Papers appearing in refereed journals
Thomas, C. L., Darch, T., Harris, P., Beaumont, D. A. and Haefele, S. M. 2021. The distribution of soil micro-nutrients and the effects on herbage micro-nutrient uptake and yield in three different pasture systems. Agronomy. 11 (9), p. 1731. https://doi.org/10.3390/agronomy11091731
Elucidating the performance of hybrid models for predicting extreme water flow events through variography and wavelet analyses
A - Papers appearing in refereed journals
Curceac, S., Milne, A. E., Atkinson, P. M., Wu, L. and Harris, P. 2021. Elucidating the performance of hybrid models for predicting extreme water flow events through variography and wavelet analyses. Journal of Hydrology. 598 (July), p. 126442. https://doi.org/10.1016/j.jhydrol.2021.126442
Changes in agricultural climate in South-Eastern England from 1892 to 2016 and differences in cereal and permanent grassland yield
A - Papers appearing in refereed journals
Addy, J., Ellis, R. H., Macdonald, A. J., Semenov, M. A. and Mead, A. 2021. Changes in agricultural climate in South-Eastern England from 1892 to 2016 and differences in cereal and permanent grassland yield. Agricultural and Forest Meteorology. 308-309, p. 108560. https://doi.org/10.1016/j.agrformet.2021.108560
Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils
A - Papers appearing in refereed journals
Clark, I. M., Hughes, D. J., Fu, Q., Abadie, M. and Hirsch, P. R. 2021. Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils . Scientific Reports. 11, p. 15905. https://doi.org/10.1038/s41598-021-95100-9
Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat
A - Papers appearing in refereed journals
Hammond-Kosack, M., King, R., Kanyuka, K. and Hammond-Kosack, K. E. 2021. Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat . Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13672
Understanding the thermodynamic properties of insect swarms
A - Papers appearing in refereed journals
Reynolds, A. M. 2021. Understanding the thermodynamic properties of insect swarms. Scientific Reports. 11, p. 14979. https://doi.org/10.1038/s41598-021-94582-x
Weierstrassian Levy walks are a by-product of crawling
A - Papers appearing in refereed journals
Reynolds, A. M. 2021. Weierstrassian Levy walks are a by-product of crawling. European Physical Journal E. 44, p. 96. https://doi.org/10.1140/epje/s10189-021-00100-2
A case study on the effects of data temporal resolution on the simulation of water flux extremes using a process-based model at the grassland field scale
A - Papers appearing in refereed journals
Wu, L., Curceac, S., Atkinson, Peter, Milne, A. E. and Harris, P. 2021. A case study on the effects of data temporal resolution on the simulation of water flux extremes using a process-based model at the grassland field scale. Agricultural Water Management. 255, p. 107049. https://doi.org/10.1016/j.agwat.2021.107049
Loss of mechanical stiffness and the emergence of Lévy walks in active T cells
A - Papers appearing in refereed journals
Reynolds, A. M. 2021. Loss of mechanical stiffness and the emergence of Lévy walks in active T cells. Physics Letters A. 408 (27 Aug), p. 127507. https://doi.org/10.1016/j.physleta.2021.127507
The grain mineral composition of barley, oat and wheat on soils with pH and soil phosphorus gradients
A - Papers appearing in refereed journals
Jordan-Meille, L., Holland, J. E., McGrath, S. P., Glendining, M. J., Thomas, C. L. and Haefele, S. M. 2021. The grain mineral composition of barley, oat and wheat on soils with pH and soil phosphorus gradients. European Journal of Agronomy. 126, p. 126281. https://doi.org/10.1016/j.eja.2021.126281
Corrigendum to “Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorus acquisition in plants” [Soil Biol. Biochem. 142 (2020) 107695]
A - Papers appearing in refereed journals
Mezeli, M. M., Page, S., George, T. S., Neilson, R., Mead, A., Blackwell, M. S. A. and Haygarth, P. M. 2021. Corrigendum to “Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorus acquisition in plants” [Soil Biol. Biochem. 142 (2020) 107695]. Soil Biology and Biochemistry. 157, p. 108145. https://doi.org/10.1016/j.soilbio.2021.108145
Harmonic radar tracking reveals that honeybee drones navigate between multiple aerial leks
A - Papers appearing in refereed journals
Woodgate, J. L., Makinson, J. C., Rossi, N., Reynolds, A. M., Rawlings, C. J. and Chittka, L. 2021. Harmonic radar tracking reveals that honeybee drones navigate between multiple aerial leks. iScience. 24 (6), p. 102499. https://doi.org/10.1016/j.isci.2021.102499
Identification and Expression of Secreted In Xylem Pathogenicity Genes in Fusarium oxysporum f. sp. pisi
A - Papers appearing in refereed journals
Jenkins, S., Taylor, A., Jackson, A. C., Armitage, A. D., Bates, H. J., Mead, A., Harrison, R. J. and Clarkson, J. P. 2021. Identification and Expression of Secreted In Xylem Pathogenicity Genes in Fusarium oxysporum f. sp. pisi. Frontiers in Microbiology. 12, p. 593140. https://doi.org/10.3389/fmicb.2021.593140
Cerebrospinal fluid proteome shows disrupted neuronal development in multiple sclerosis
A - Papers appearing in refereed journals
Mosleth, E. F., Vedeler, C. A., Liland, K. H., Mcleod, A., Bringeland, G. H., Kroondijk, L., Berven, F. S., Lysenko, A., Rawlings, C. J., Eid, K. E-H., Opsahl, J. A., Gjertsen, B. T., Myhr, K-M. and Gavasso, S. 2021. Cerebrospinal fluid proteome shows disrupted neuronal development in multiple sclerosis. Scientific Reports. 11, p. 4087. https://doi.org/10.1038/s41598-021-82388-w
Optimising storage conditions and processing of sheep urine for nitrogen cycle and gaseous emission measurements from urine patches
A - Papers appearing in refereed journals
Charteris, A., Marsden, K. A., Evans, J., Barrat, H., Loick, N., Jones, D. L., Chadwick, D. R. and Cardenas, L. M. 2021. Optimising storage conditions and processing of sheep urine for nitrogen cycle and gaseous emission measurements from urine patches. Scientific Reports. 11, p. 12116. https://doi.org/10.1038/s41598-021-91498-4
Contrasting Responses of Rhizosphere Bacterial, Fungal, Protist and Nematode Communities to Nitrogen Fertilisation and Crop Genotype in Field Grown Oilseed Rape (Brassica napus)
A - Papers appearing in refereed journals
Picot, E., Hale, C. C., Hilton, S., Teakle, G. R., Schafer, H., Huang, Y-J., Perryman, S. A. M., West, J. S. and Bending, G. D. 2021. Contrasting Responses of Rhizosphere Bacterial, Fungal, Protist and Nematode Communities to Nitrogen Fertilisation and Crop Genotype in Field Grown Oilseed Rape (Brassica napus). Frontiers in Sustainable Food Systems. 5 (article), p. 613269. https://doi.org/10.3389/fsufs.2021.613269
Agricultural intensification and climate change have increased the threat from weeds
A - Papers appearing in refereed journals
Storkey, J., Mead, A., Addy, J. and Macdonald, A. J. 2021. Agricultural intensification and climate change have increased the threat from weeds. Global Change Biology. 118 (2), p. e2002548117. https://doi.org/10.1111/gcb.15585
Plant Available Zinc Is Influenced by Landscape Position in the Amhara Region, Ethiopia
A - Papers appearing in refereed journals
Desta, M. K., Broadley, M. R., McGrath, S. P., Hernandez-Allica, J., Hassall, K. L., Gameda. S., Amede. T. and Haefele, S. M. 2021. Plant Available Zinc Is Influenced by Landscape Position in the Amhara Region, Ethiopia. Plants - Basel. 10 (2), p. 254. https://doi.org/10.3390/plants10020254
Scale-free movement patterns in termites emerge from social interactions and preferential attachments
A - Papers appearing in refereed journals
Paiva, L. R., Marins, A., Cristaldo, P. F., Ribeiro, D., Alves, S. G., Reynolds, A. M., DeSouza, O. and Miramontes, O. 2021. Scale-free movement patterns in termites emerge from social interactions and preferential attachments. Proceedings of the National Academy of Sciences. 118 (20), p. e2004369118. https://doi.org/10.1073/pnas.2004369118
Reproducing analysis of Sirius model simulations of wheat yields, 1892-2016
J - Computer programs
Addy, J., Semenov, M. A. and Mead, A. 2021. Reproducing analysis of Sirius model simulations of wheat yields, 1892-2016.
Simulated wheat yields from Sirius, 1892-2016
N - Datasets
Addy, J., Semenov, M. A. and Mead, A. 2021. Simulated wheat yields from Sirius, 1892-2016.
An equation of state for insect swarms
A - Papers appearing in refereed journals
Sinhuber, M., Van der Vaart, K., Yenchia, F., Reynolds, A. M. and Ouellette, N.T. 2021. An equation of state for insect swarms. Scientific Reports. 11 (3773). https://doi.org/10.1038/s41598-021-83303-z
The potential for soybean to diversify the production of plant-based protein in the UK
A - Papers appearing in refereed journals
Coleman, K., Whitmore, A. P., Hassall, K. L., Shield, I. F., Semenov, M. A., Dobermann, A., Bourhis, Y., Eskandary, A. and Milne, A. E. 2021. The potential for soybean to diversify the production of plant-based protein in the UK. Science of the Total Environment. 767, p. 144903. https://doi.org/10.1016/j.scitotenv.2020.144903
The Outstanding Scientist, R.A. Fisher: His Views on Eugenics and Race
A - Papers appearing in refereed journals
Bodmer, W., Bailey, R. A., Charlesworth, B., Eyre-Walker, A., Farewell, V., Mead, A. and Senn, S. 2021. The Outstanding Scientist, R.A. Fisher: His Views on Eugenics and Race. Heredity. https://doi.org/10.1038/s41437-020-00394-6
Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity
A - Papers appearing in refereed journals
Neal, A. L., Hughes, D. J., Clark, I. M., Jansson, J. K. and Hirsch, P. R. 2021. Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity. mSystems. 6 (3), pp. e01056-20. https://doi.org/10.1128/mSystems.01056-20
Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality
A - Papers appearing in refereed journals
Oddy, J., Alarcon-Reverte, R., Wilkinson, M. D., Ravet, K., Raffan, S., Minter, A., Mead, A., Elmore, J. S., Moreira de Almeida, I., Cryer, N., Halford, N. G. and Pearce, S. 2021. Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality. BMC Plant Biology. 21 (1), p. 302. https://doi.org/10.1186/s12870-021-03058-7
Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2
A - Papers appearing in refereed journals
Raffan, S., Sparks, C. A., Huttly, A. K., Hyde, L., Martignago, D., Mead, A., Hanley, S. J., Wilkinson, P., Barker, G., Edwards, K. J., Curtis, T. Y., Usher, S. L., Kosik, O. and Halford, N. G. 2021. Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2 . Plant Biotechnology Journal. 19 (8), pp. 1602-1613. https://doi.org/10.1111/pbi.13573
The impact of weather and increased atmospheric CO2 from 1892 to 2016 on simulated yields of UK wheat
A - Papers appearing in refereed journals
Addy, J. W. G., Ellis, R.H., Macdonald, A. J., Semenov, M. A. and Mead, A. 2021. The impact of weather and increased atmospheric CO2 from 1892 to 2016 on simulated yields of UK wheat. Journal of the Royal Society Interface. 18 (179), p. 20210250. https://doi.org/10.1098/rsif.2021.0250
KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species
A - Papers appearing in refereed journals
Hassani-Pak, K., Singh, A., Brandizi, M., Hearnshaw, J., Parsons, J. D., Amberkar, S., Phillips, A. L., Doonan, J. H. and Rawlings, C. J. 2021. KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species. Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13583
Resolving the identification of weak-flying insects during flight: a coupling between rigorous data processing and biology
A - Papers appearing in refereed journals
Hassall, K. L., Dye, A., Potamitis, I and Bell, J. R. 2021. Resolving the identification of weak-flying insects during flight: a coupling between rigorous data processing and biology. Agricultural and Forest Entomology. https://doi.org/10.1111/afe.12453
Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel
A - Papers appearing in refereed journals
Lyra, D. H., Griffiths, C. A., Watson, A., Joynson, R., Molero, G., Igna, A. A., Hassani-Pak, K., Reynolds, M. P., Hall, A. and Paul, M. J. 2021. Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel. Food and Energy Security. p. e292. https://doi.org/10.1002/fes3.292
Wheat amino acid transporters highly expressed in grain cells regulate amino acid accumulation in grain
A - Papers appearing in refereed journals
Wan, Y., Wang, Y., Shi, Z., Rentsch, D., Ward, J. L., Hassall, K. L., Sparks, C. A., Huttly, A. K., Buchner, P. H., Powers, S. J., Shewry, P. R. and Hawkesford, M. J. 2021. Wheat amino acid transporters highly expressed in grain cells regulate amino acid accumulation in grain. PLOS ONE. 16 (2), p. e0246763. https://doi.org/10.1371/journal.pone.0246763
Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorus acquisition in plants
A - Papers appearing in refereed journals
Mezeli, M. M., Page, S., George, T. S., Neilson, R., Mead, A., Blackwell, M. S. A. and Haygarth, P. M. 2020. Using a meta-analysis approach to understand complexity in soil biodiversity and phosphorus acquisition in plants. Soil Biology and Biochemistry. 142, p. 107695. https://doi.org/10.1016/j.soilbio.2019.107695
People
- Abrare, Sadik
- Al-Manir, Mohammad
- Baker, Chris
- Beard, Nik
- Brandizi, Marco
- Casaletto, Michael
- Castells, Nathalie
- Clark, Suzanne
- Darch, Tegan
- De-Klerk, Arne
- Doran, Pamela
- Dudley, Ryan
- Edwins, Simon
- Espino, Apple
- Fakeye, Ireoluwa
- Glendining, Margaret
- Hassani-Pak, Keywan
- Holegar, Sam
- Hughes, David
- Inegbedion, Grace
- Jimoh, Ibrahim
- Kendall, Kevin
- Lannan, Lewis
- Leask, Graham
- Low, Harriet
- Maas, Ellen
- Mead, Andrew
- Minea, Constantin
- Miniailo, Kateryna
- Mishra, Harsh
- Morosan, Alexandru
- North, Teri
- Nureldin, Hazem
- Ostler, Richard
- Oulaid, Bader
- Payne, Roger
- Perryman, Sarah
- Pino-Chandia, Loreto
- Rawlings, Chris
- Reilly, Kirsten
- Reilly, Peter
- Reynolds, Andy
- Ross, Gavin
- Saeed, Sana
- Seed-Ahmed, Omer
- Sewpersad, Nikki
- Thompson, Robin
- Tooth, Mark
- Torrenti, Felipe
- Varma, Varun
- Velasquez, Melina
- Vijayakumar-Ram, Gokul
- Warr, Alex
- Webb, Philip
- Winfield, Oliver