PS: Resilience and Development

TitlePS: Resilience and Development
TypeResearch cluster

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Sucrose homeostasis: Mechanisms and opportunity in crop yield improvement

A - Papers appearing in refereed journals
Miret-Barrio, J., Griffiths, C. A. and Paul, M. J. 2024. Sucrose homeostasis: Mechanisms and opportunity in crop yield improvement. Journal of Plant Physiology. 294, p. 154188. https://doi.org/10.1016/j.jplph.2024.154188

The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum)

A - Papers appearing in refereed journals
Harrison, C., Noleto-Dias, C., Ruvo, G., Hughes, D. J., Smith, D., Mead, A., Ward, J. L., Heuer, S. and Macgregor, D. 2024. The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum). Functional Plant Biology. 51, p. FP23193. https://doi.org/10.1071/FP23193

universal_grass_peps

N - Datasets
Mitchell, R. A. C. 2024. universal_grass_peps. Rothamsted Research. https://doi.org/10.23637/rothamsted.98ywz

Environmental regulation of male fertility is mediated through Arabidopsis transcription factors bHLH89, 91, and 10

A - Papers appearing in refereed journals
Robson, J. K., Tidy, A. C., Thomas, S. G. and Wilson, Z. A. 2023. Environmental regulation of male fertility is mediated through Arabidopsis transcription factors bHLH89, 91, and 10 . Journal of Experimental Botany. p. erad480. https://doi.org/10.1093/jxb/erad480

Transcriptomic and Metabolomic Analyses Reveal the Importance of Lipid Metabolism and Photosynthesis Regulation in High Salinity Tolerance in Barley (Hordeum vulgare L.) Leaves Derived from Mutagenesis Combined with Microspore Culture

A - Papers appearing in refereed journals
Xu, H., Halford, N. G., Guo, G., Chen, Z., Li, Y., Zhou, L, Liu, C. and Xu, R. 2023. Transcriptomic and Metabolomic Analyses Reveal the Importance of Lipid Metabolism and Photosynthesis Regulation in High Salinity Tolerance in Barley (Hordeum vulgare L.) Leaves Derived from Mutagenesis Combined with Microspore Culture. International Journal Of Molecular Sciences. 24 (23), p. 16757. https://doi.org/10.3390/ijms242316757

High canopy photosynthesis before anthesis explains the outstanding yield performance of rice cultivars with ideal plant architecture

A - Papers appearing in refereed journals
Cheng, Y., Xiao, F., Huang, D., Yang, Y., Cheng, W., Jin, S., Li, G., Ding, Y., Paul, M. J. and Liu, Z. 2023. High canopy photosynthesis before anthesis explains the outstanding yield performance of rice cultivars with ideal plant architecture. Field Crops Research. 306, p. 109223. https://doi.org/10.1016/j.fcr.2023.109223

Nitrogen fertilization produces divergent effects on canopy structure between indica and japonica rice reflected in leaf to panicle ratio based on deep learning

A - Papers appearing in refereed journals
Yang, Z., Qi, X., Dai, Y., Wang, Y., Xiao, F., Ni, J., Jin, S., Li, G., Ding, Y., Paul, M. J. and Liu, Z. 2023. Nitrogen fertilization produces divergent effects on canopy structure between indica and japonica rice reflected in leaf to panicle ratio based on deep learning. Field Crops Research. 304 (DEC), p. 109184. https://doi.org/10.1016/j.fcr.2023.109184

Trehalose-6-phosphate signaling regulates lateral root formation in Arabidopsis thaliana

A - Papers appearing in refereed journals
Morales-Herrera, S., Jourquin, J., Coppe, F., Lopez-Galvis, L., De Smet, T., Safi, A., Njo, M., Griffiths, C. A., Sidda, J. D., Mccullagh, J. S. O., Xue, X., Davis, B. G., Van der Eycken, J., Paul, M. J., Van Dijck, P. and Beeckman, T. 2023. Trehalose-6-phosphate signaling regulates lateral root formation in Arabidopsis thaliana. Proceedings of the National Academy of Sciences. 120 (40), p. e2302996120. https://doi.org/10.1073/pnas.2302996120

Low asparagine wheat - Europe’s first field trial of genome edited wheat amid rapidly changing regulations on acrylamide in food and genome editing of crops

A - Papers appearing in refereed journals
Kaur, N., Brock, T., Raffan, S. and Halford, N. G. 2023. Low asparagine wheat - Europe’s first field trial of genome edited wheat amid rapidly changing regulations on acrylamide in food and genome editing of crops. Breeding Science. https://doi.org/10.1270/jsbbs.23058

An efficient triose phosphate synthesis and distribution in wheat provides tolerance to higher field temperature

A - Papers appearing in refereed journals
Romero-Reyes, A., Hernandez-Leon, S. G., Leyva-Carrillo, L., Yepiz-Plascencia, G., Reynolds, M. P., Paul, M. J., Heuer, S. and Valenzuela-Soto, E. M. 2023. An efficient triose phosphate synthesis and distribution in wheat provides tolerance to higher field temperature. Biochemical Journal. 480 (16), pp. 1365-1377. https://doi.org/10.1042/BCJ20230117

Reducing the risk of acrylamide and other processing contaminant formation in wheat products

A - Papers appearing in refereed journals
Kaur, N. and Halford, N. G. 2023. Reducing the risk of acrylamide and other processing contaminant formation in wheat products . Foods. 12 (17), p. 3264. https://doi.org/10.3390/foods12173264

The plant cell wall - advances and current perspectives - Editorial

A - Papers appearing in refereed journals
De-Souza, W., Mitchell, R. A. C. and Cesarino, I. 2023. The plant cell wall - advances and current perspectives - Editorial. Frontiers in Plant Science. 14, p. 1235749. https://doi.org/10.3389/fpls.2023.1235749

Effects of hotter, drier conditions on gaseous losses from nitrogen fertilisers

A - Papers appearing in refereed journals
Drame, M., Carswell, A. M., Roberts, W., Hood, J., Jemo, M., Heuer, S., Kirk, G., Pawlett, M. and Misselbrook, T. H. 2023. Effects of hotter, drier conditions on gaseous losses from nitrogen fertilisers. Journal of Environmental Management. 345, p. 118671. https://doi.org/10.1016/j.jenvman.2023.118671

Real-Time Quantitative PCR - Primer Design, Reference Gene Selection, Calculations and Statistics

A - Papers appearing in refereed journals
Chen, Z., Halford, N. G. and Liu, C. 2023. Real-Time Quantitative PCR - Primer Design, Reference Gene Selection, Calculations and Statistics. Metabolites. 13 (7), p. 806. https://doi.org/10.3390/metabo13070806

High temperature tolerance in a novel, high-quality Phaseolus vulgaris breeding line is due to maintenance of pollen viability and successful germination on the stigma

A - Papers appearing in refereed journals
Rose, T., Lowe, C., Miret, J. A., Walpole, H., Halsey, K., Venter, E., Urban, M. O., Buendia, H. F., Kurup, S., O’Sullivan, D., Beebe, S. and Heuer, S. 2023. High temperature tolerance in a novel, high-quality Phaseolus vulgaris breeding line is due to maintenance of pollen viability and successful germination on the stigma. Plants - Basel. 12 (13), p. 2491. https://doi.org/10.3390/plants12132491

PHOSPHORUS-STARVATION TOLERANCE 1 (OsPSTOL1) is prevalent in upland rice and enhances root growth and hastens low phosphate signaling in wheat

A - Papers appearing in refereed journals
Kettenburg, A. T., Lopez, M. A., Yogendra, K., Prior, M. J., Rose, T., Bimson, S., Heuer, S., Roy, S. J. and Bailey-Serres, J. 2023. PHOSPHORUS-STARVATION TOLERANCE 1 (OsPSTOL1) is prevalent in upland rice and enhances root growth and hastens low phosphate signaling in wheat. Plant, Cell and Environment. https://doi.org/10.1111/pce.14588

Inhibition of Rice Germination by Ustiloxin A Involves Alteration in Carbon Metabolism and Amino Acid Utilization

A - Papers appearing in refereed journals
Fu, X., Jin, Y., Paul, M. J., Yuan, M., Liang, X., Cui, R., Huang, Y-J., Peng, W. and Liang, X. 2023. Inhibition of Rice Germination by Ustiloxin A Involves Alteration in Carbon Metabolism and Amino Acid Utilization. Frontiers in Plant Science. 14, p. 1168985. https://doi.org/10.3389/fpls.2023.1168985

Uncovering plant epigenetics - new insights into cytosine methylation in rye genomes

A - Papers appearing in refereed journals
Kaur, N., Nayakoti, S., Brock, T. and Halford, N. G. 2023. Uncovering plant epigenetics - new insights into cytosine methylation in rye genomes . Journal of Experimental Botany. 74 (12), pp. 3395-3398. https://doi.org/10.1093/jxb/erad144

A high soluble-fibre allele in wheat encodes a defective cell wall peroxidase responsible for dimerization of ferulate moieties on arabinoxylan

A - Papers appearing in refereed journals
Mitchell, R. A. C., Oszvald, M., Pellny, T. K., Freeman, J., Halsey, K., Sparks, C. A., Huttly, A. K., Specel, S., Leverington-Waite, M., Griffiths, S., Shewry, P. R. and Lovegrove, A. 2023. A high soluble-fibre allele in wheat encodes a defective cell wall peroxidase responsible for dimerization of ferulate moieties on arabinoxylan. bioRxiv. https://doi.org/10.1101/2023.03.08.531735

Modification of plant cell walls with hydroxycinnamic acids by BAHD acyltransferases

A - Papers appearing in refereed journals
Chandrakanth, N. N., Zhang, C. C., Freeman, J., de Souza, W. R., Bartley, L. E. and Mitchell, R. A. C. 2023. Modification of plant cell walls with hydroxycinnamic acids by BAHD acyltransferases. Frontiers in Plant Science. 13, p. 1088879. https://doi.org/10.3389/fpls.2022.1088879

Nutritional and tissue-specific regulation of cytochrome P450 CYP711A MAX1 homologues and strigolactone biosynthesis in wheat

A - Papers appearing in refereed journals
Sigalas, P., Buchner, P. H., Thomas, S. G., Jamois, F., Arkourn, M., Yvin, J.- C., Bennett, M. J. and Hawkesford, M. J. 2023. Nutritional and tissue-specific regulation of cytochrome P450 CYP711A MAX1 homologues and strigolactone biosynthesis in wheat. Journal of Experimental Botany. 74 (6), pp. 1890-1910. https://doi.org/10.1093/jxb/erad008

Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial.

A - Papers appearing in refereed journals
Raffan, S., Oddy, J., Mead, A., Barker, G., Curtis, T. Y., Usher, S. L., Burt, C. and Halford, N. G. 2023. Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial. Plant Biotechnology Journal. 21 (6), pp. 1097-1099. https://doi.org/10.1111/pbi.14026

Genetic diversity and population structure analysis of barley landraces from Shanghai region using genotyping-by-sequencing

A - Papers appearing in refereed journals
Li, L., Halford, N. G., Wang, H., Zong, Y., Guo, Z., Lu, R., Liu, C. and Chen, Z. 2023. Genetic diversity and population structure analysis of barley landraces from Shanghai region using genotyping-by-sequencing. Phyton. 92 (4), pp. 1275-1287. https://doi.org/10.32604/phyton.2023.026946

Accounting for environmental variation in the free asparagine content of wheat grain

A - Papers appearing in refereed journals
Oddy, J., Elmore, S. and Halford, N. G. 2023. Accounting for environmental variation in the free asparagine content of wheat grain. Journal of Food Composition and Analysis - JFCA. 120, p. 105333. https://doi.org/10.1016/j.jfca.2023.105333

Reducing dietary acrylamide exposure from wheat products through crop management and imaging

A - Papers appearing in refereed journals
Oddy, J., Addy, J., Mead, A., Hall, C., Mackay, C., Ashfield, T., Mcdiarmid, F., Curtis, T. Y., Raffan, S., Wilkinson, M. D., Elmore, J. S., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Reducing dietary acrylamide exposure from wheat products through crop management and imaging. Journal of Agricultural and Food Chemistry - JAFC. 71 (7), pp. 3403-3413. https://doi.org/10.1021/acs.jafc.2c07208

Genetic control of grain amino acid composition in a UK soft wheat mapping population

A - Papers appearing in refereed journals
Oddy, J., Chhetry, M., Awal, R., Addy, J., Wilkinson, M. D., Smith, D., King, R., Hall, C., Testa, R., Murray, E., Raffan, S., Curtis, T. Y., Wingen, L., Griffiths, S., Berry, S., Elmore, S. J., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Genetic control of grain amino acid composition in a UK soft wheat mapping population. The Plant Genome. 16 (4), p. e20335. https://doi.org/10.1002/tpg2.20335

Improving crop yield potential Underlying biological processes and future prospects

A - Papers appearing in refereed journals
Burgess, A. J., Masclaux-Daubresse, C., Strittmatter, G., Weber, A. P. M., Taylor, S. H., Harbinson, J., Yin, X., Freeman, S. E., Paul, M. J., Westhoff, P., Loreto, F., Ceriotti, A., Saltenis, V. L. R., Pribil, M., Nacry, P., Scharff, L. B., Jensen, P. E., Muller, B., Cohan, J., Foulkes, J., Rogowsky, P., Debaeke, P., Meyer, C., Nelissen, H., Inze, D., Lankhorst, R. K., Parry, M. A. J., Murchie, E. H. and Baekelandt, A. 2022. Improving crop yield potential Underlying biological processes and future prospects. Food and Energy Security. p. e435. https://doi.org/10.1002/fes3.435

Diverged subpopulations in tropical Urochloa (Brachiaria) forage species indicate a role for facultative apomixis and varying ploidy in their population structure and evolution

A - Papers appearing in refereed journals
Higgins, J., Tomaszewska, P., Pellny, T. K., Castiblanco, V., Arango, J., Tohme, J., Schwarzacher, T., Mitchell, R. A. C., Heslop-Harrison, J. S. and Vega, J. J. D. 2022. Diverged subpopulations in tropical Urochloa (Brachiaria) forage species indicate a role for facultative apomixis and varying ploidy in their population structure and evolution. Annals of Botany. 130 (5), pp. 657-669. https://doi.org/10.1093/aob/mcac115

Proanthocyanidin Biosynthesis in the Developing Wheat Seed Coat Investigated by Chemical and RNA-seq Analysis

A - Papers appearing in refereed journals
Phillips, A. L., Vaughan, S., Baker, J., Primavesi, L. F., Patil, A., King, R., Hassani-Pak, K., Kulasekaran, S., Coghill, J., Ward, J. L. and Huttly, A. K. 2022. Proanthocyanidin Biosynthesis in the Developing Wheat Seed Coat Investigated by Chemical and RNA-seq Analysis. Plant Direct. 6 (10), p. e453. https://doi.org/10.1002/pld3.453

Novel molecules and target genes for vegetative heat tolerance in wheat

A - Papers appearing in refereed journals
Rose, T., Wilkinson, M. D., Lowe, C., Xu, J., Hughes, D. J., Hassall, K. L., Hassani-Pak, K., Amberkar, S., Noleto-Dias, C., Ward, J. L. and Heuer, S. 2022. Novel molecules and target genes for vegetative heat tolerance in wheat. Plant Environmental Interactions. 3 (6), pp. 264-289. https://doi.org/10.1002/pei3.10096

Integration of embryo–endosperm interaction into a holistic and dynamic picture of seed development using a rice mutant with notched-belly kernels

A - Papers appearing in refereed journals
Tao, Y., An, L., Xiao, F., Lia, G, Ding, Y, Paul, M. J. and Liu, Z. 2022. Integration of embryo–endosperm interaction into a holistic and dynamic picture of seed development using a rice mutant with notched-belly kernels. The Crop Journal. 10 (3), pp. 729-742. https://doi.org/10.1016/j.cj.2021.10.007

Epigenetic switch reveals CRISPR/Cas9 response to cytosine methylation in plants: Comment

A - Papers appearing in refereed journals
Raffan, S., Kaur, N. and Halford, N. G. 2022. Epigenetic switch reveals CRISPR/Cas9 response to cytosine methylation in plants: Comment. New Phytologist. 235 (6), pp. 2146-2148. https://doi.org/10.1111/nph.18405

Advances in barley breeding for improving nitrogen use efficiency

A - Papers appearing in refereed journals
Chen, Z., Li, L., Halford, N. G., Xu, H., Huang, L., Gao, R., Lu, R. and Liu, C 2022. Advances in barley breeding for improving nitrogen use efficiency. Agronomy. 12 (7), p. 1682. https://doi.org/10.3390/agronomy12071682

Changes in the concentrations and transcripts for gibberellins and other hormones in a growing leaf and roots of wheat seedlings in response to water restriction

A - Papers appearing in refereed journals
Ptoskova, K., Szecowka, M., Jaworek, P., Tarkowska, D., Petrik, I., Pavlovic, I., Novak, O., Thomas, S. G., Phillips, A. L. and Hedden, P. 2022. Changes in the concentrations and transcripts for gibberellins and other hormones in a growing leaf and roots of wheat seedlings in response to water restriction. BMC Plant Biology. 22 (1), p. 284. https://doi.org/10.1186/s12870-022-03667-w

The effects of brief heat during early booting on reproductive, developmental and chlorophyll physiological performance in common wheat (Triticum aestivum L.)

A - Papers appearing in refereed journals
Xu, J., Lowe, C., Hernandez-Leon, S. G., Dreisigacker, S., Reynolds, M. P., Valenzuela-Soto, E. M., Paul, M. J. and Heuer, S. 2022. The effects of brief heat during early booting on reproductive, developmental and chlorophyll physiological performance in common wheat (Triticum aestivum L.). Frontiers in Plant Science. 13, p. 886541. https://doi.org/10.3389/fpls.2022.886541

Characterisation of Grains and Flour Fractions from Field Grown Transgenic Oil-Accumulating Wheat Expressing Oat WRI1

A - Papers appearing in refereed journals
Snell, P., Wilkinson, M. D., Taylor, G. J., Hall, S., Sharma, S., Sirijovski, N., Hansson, M., Shewry, P. R., Hofvander, P. and Grimberg, A. 2022. Characterisation of Grains and Flour Fractions from Field Grown Transgenic Oil-Accumulating Wheat Expressing Oat WRI1. Plants - Basel. 11 (7), p. 889. https://doi.org/10.3390/plants11070889

Progress towards the production of potatoes and cereals with low acrylamide-forming potential

A - Papers appearing in refereed journals
Halford, N. G., Raffan, S. and Oddy, J. 2022. Progress towards the production of potatoes and cereals with low acrylamide-forming potential. Current Opinion in Food Science. 47, p. 100887. https://doi.org/10.1016/j.cofs.2022.100887

Improving rice photosynthesis and yield through trehalose 6-phosphate signalling

A - Papers appearing in refereed journals
Paul, M. J., Miret-Barrio, J. and Griffiths, C. A. 2022. Improving rice photosynthesis and yield through trehalose 6-phosphate signalling. Molecular Plant. 15 (4), pp. 586-588. https://doi.org/10.1016/j.molp.2022.03.004

Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat

A - Papers appearing in refereed journals
Oszvald, M., Hassall, K. L., Hughes, D. J., Torres-Ballesteros, A., Clark, I. M., Riche, A. B. and Heuer, S. 2022. Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat. Frontiers in Plant Science. 13, p. 816475. https://doi.org/10.3389/fpls.2022.816475

Global wheat production could benefit from closing the genetic yield gap

A - Papers appearing in refereed journals
Senapati, N., Semenov, M. A., Halford, N. G., Hawkesford, M. J., Asseng, S., Cooper, M., Ewert, F., Ittersum, M. K. V., Martre, P., Olesen, J. E., Reynolds, M., Rotter, R. P. and Webber, H. 2022. Global wheat production could benefit from closing the genetic yield gap. Nature Food. 3 (July), pp. 532-541. https://doi.org/10.1038/s43016-022-00540-9

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