PS: Resilience and Development
| Title | PS: Resilience and Development |
|---|---|
| Type | Research cluster |
Outputs
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Generic workflow of a highly effective and easy anther culture method for both japonica and indica rice
A - Papers appearing in refereed journals
Guo, G., Liu, S., Zhang, S., Yang, L., Zong, Y., Halford, N. G., He, T., Gao, R., Guo, Z., Zhou, L., Liu, C., Wu, S. and Chen, Z. 2024. Generic workflow of a highly effective and easy anther culture method for both japonica and indica rice. Plants - Basel. 13 (17), p. 2531. https://doi.org/10.3390/plants13172531
Phosphorus availability drives the effect of legume-wheat intercropping on prokaryotic community interactions
A - Papers appearing in refereed journals
Lo-Presti, E., Kavamura, V. N., Abadie, M., Romeo, M., Reid, T., Heuer, S., Monti, M. and Mauchline, T. H. 2024. Phosphorus availability drives the effect of legume-wheat intercropping on prokaryotic community interactions. Applied Soil Ecology. 199 (July), p. 105414. https://doi.org/10.1016/j.apsoil.2024.105414
Nitrogen topdressing at panicle initiation modulated nitrogen allocation between storage proteins and free nitrogenous compounds in grains of japonica rice
A - Papers appearing in refereed journals
Wang, L., Yang, L., Hu, L., Ren, Y., Li, G., Ding, Y., Paul, M. J. and Liu, Z. 2024. Nitrogen topdressing at panicle initiation modulated nitrogen allocation between storage proteins and free nitrogenous compounds in grains of japonica rice. Journal of Cereal Science. https://doi.org/10.1016/j.jcs.2024.104010
At the crossroads: strigolactones mediate changes in cytokinin synthesis and signalling in response to nitrogen limitation
A - Papers appearing in refereed journals
Sigalas, P., Bennett, T., Buchner, P. H., Thomas, S. G., Jamois, F., Arkoun, M., Yvin, J.-C., Bennett, M.J. and Hawkesford, M. J. 2024. At the crossroads: strigolactones mediate changes in cytokinin synthesis and signalling in response to nitrogen limitation. The Plant Journal. https://doi.org/10.1111/tpj.16976
Stacked mutations in wheat homologues of rice SEMI-DWARF1 confer a novel semi-dwarf phenotype
A - Papers appearing in refereed journals
Ndreca, B., Huttly, A. K., Bibi, S., Bayon, C., Lund, G., Ham, J., Alarcon-Reverte, R., Addy, J., Tarkowská, D., Pearce, S., Hedden, P., Thomas, S. G. and Phillips, A. L. 2024. Stacked mutations in wheat homologues of rice SEMI-DWARF1 confer a novel semi-dwarf phenotype. BMC Plant Biology. 24, p. 384. https://doi.org/10.1186/s12870-024-05098-1
SnRK1/TOR/T6P: three musketeers guarding energy for root growth
A - Papers appearing in refereed journals
Morales-Herrera, S., Paul, M. J., Dijck, P. V. and Beeckman, T. 2024. SnRK1/TOR/T6P: three musketeers guarding energy for root growth. Trends in Plant Science. https://doi.org/10.1016/j.tplants.2024.03.006
Genetic diversity and genome-wide association analysis of the hulled/naked trait in a barley collection from Shanghai Agricultural Gene Bank.
A - Papers appearing in refereed journals
Chen, Z., Guo, Z., Li, L., Halford, N. G., Guo, G., Zhang, S., Li, W., Zong, Y., Liu, S., Liu, C. and Zhou, L 2024. Genetic diversity and genome-wide association analysis of the hulled/naked trait in a barley collection from Shanghai Agricultural Gene Bank. International Journal Of Molecular Sciences. 25 (10), p. 5217. https://doi.org/10.3390/ijms25105217
How to switch on a master switch
A - Papers appearing in refereed journals
Kaur, N. and Halford, N. G. 2024. How to switch on a master switch. Journal of Experimental Botany. 75 (10), pp. 2773-2775. https://doi.org/10.1093/jxb/erae116
Sucrose homeostasis: Mechanisms and opportunity in crop yield improvement
A - Papers appearing in refereed journals
Miret-Barrio, J., Griffiths, C. A. and Paul, M. J. 2024. Sucrose homeostasis: Mechanisms and opportunity in crop yield improvement. Journal of Plant Physiology. 294, p. 154188. https://doi.org/10.1016/j.jplph.2024.154188
The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum)
A - Papers appearing in refereed journals
Harrison, C., Noleto-Dias, C., Ruvo, G., Hughes, D. J., Smith, D., Mead, A., Ward, J. L., Heuer, S. and Macgregor, D. 2024. The mechanisms behind the contrasting responses to waterlogging in black-grass (Alopecurus myosuroides) and wheat (Triticum aestivum). Functional Plant Biology. 51, p. FP23193. https://doi.org/10.1071/FP23193
universal_grass_peps
N - Datasets
Mitchell, R. A. C. 2024. universal_grass_peps. Rothamsted Research. https://doi.org/10.23637/rothamsted.98ywz
Low asparagine wheat - Europe’s first field trial of genome edited wheat amid rapidly changing regulations on acrylamide in food and genome editing of crops
A - Papers appearing in refereed journals
Kaur, N., Brock, T., Raffan, S. and Halford, N. G. 2024. Low asparagine wheat - Europe’s first field trial of genome edited wheat amid rapidly changing regulations on acrylamide in food and genome editing of crops. Breeding Science. 74, pp. 37-46. https://doi.org/10.1270/jsbbs.23058
Environmental regulation of male fertility is mediated through Arabidopsis transcription factors bHLH89, 91, and 10
A - Papers appearing in refereed journals
Robson, J. K., Tidy, A. C., Thomas, S. G. and Wilson, Z. A. 2023. Environmental regulation of male fertility is mediated through Arabidopsis transcription factors bHLH89, 91, and 10 . Journal of Experimental Botany. p. erad480. https://doi.org/10.1093/jxb/erad480
Transcriptomic and Metabolomic Analyses Reveal the Importance of Lipid Metabolism and Photosynthesis Regulation in High Salinity Tolerance in Barley (Hordeum vulgare L.) Leaves Derived from Mutagenesis Combined with Microspore Culture
A - Papers appearing in refereed journals
Xu, H., Halford, N. G., Guo, G., Chen, Z., Li, Y., Zhou, L, Liu, C. and Xu, R. 2023. Transcriptomic and Metabolomic Analyses Reveal the Importance of Lipid Metabolism and Photosynthesis Regulation in High Salinity Tolerance in Barley (Hordeum vulgare L.) Leaves Derived from Mutagenesis Combined with Microspore Culture. International Journal Of Molecular Sciences. 24 (23), p. 16757. https://doi.org/10.3390/ijms242316757
High canopy photosynthesis before anthesis explains the outstanding yield performance of rice cultivars with ideal plant architecture
A - Papers appearing in refereed journals
Cheng, Y., Xiao, F., Huang, D., Yang, Y., Cheng, W., Jin, S., Li, G., Ding, Y., Paul, M. J. and Liu, Z. 2023. High canopy photosynthesis before anthesis explains the outstanding yield performance of rice cultivars with ideal plant architecture. Field Crops Research. 306, p. 109223. https://doi.org/10.1016/j.fcr.2023.109223
Nitrogen fertilization produces divergent effects on canopy structure between indica and japonica rice reflected in leaf to panicle ratio based on deep learning
A - Papers appearing in refereed journals
Yang, Z., Qi, X., Dai, Y., Wang, Y., Xiao, F., Ni, J., Jin, S., Li, G., Ding, Y., Paul, M. J. and Liu, Z. 2023. Nitrogen fertilization produces divergent effects on canopy structure between indica and japonica rice reflected in leaf to panicle ratio based on deep learning. Field Crops Research. 304 (DEC), p. 109184. https://doi.org/10.1016/j.fcr.2023.109184
Trehalose-6-phosphate signaling regulates lateral root formation in Arabidopsis thaliana
A - Papers appearing in refereed journals
Morales-Herrera, S., Jourquin, J., Coppe, F., Lopez-Galvis, L., De Smet, T., Safi, A., Njo, M., Griffiths, C. A., Sidda, J. D., Mccullagh, J. S. O., Xue, X., Davis, B. G., Van der Eycken, J., Paul, M. J., Van Dijck, P. and Beeckman, T. 2023. Trehalose-6-phosphate signaling regulates lateral root formation in Arabidopsis thaliana. Proceedings of the National Academy of Sciences. 120 (40), p. e2302996120. https://doi.org/10.1073/pnas.2302996120
An efficient triose phosphate synthesis and distribution in wheat provides tolerance to higher field temperature
A - Papers appearing in refereed journals
Romero-Reyes, A., Hernandez-Leon, S. G., Leyva-Carrillo, L., Yepiz-Plascencia, G., Reynolds, M. P., Paul, M. J., Heuer, S. and Valenzuela-Soto, E. M. 2023. An efficient triose phosphate synthesis and distribution in wheat provides tolerance to higher field temperature. Biochemical Journal. 480 (16), pp. 1365-1377. https://doi.org/10.1042/BCJ20230117
Reducing the risk of acrylamide and other processing contaminant formation in wheat products
A - Papers appearing in refereed journals
Kaur, N. and Halford, N. G. 2023. Reducing the risk of acrylamide and other processing contaminant formation in wheat products . Foods. 12 (17), p. 3264. https://doi.org/10.3390/foods12173264
The plant cell wall: advances and current perspectives - Editorial
A - Papers appearing in refereed journals
De-Souza, W., Mitchell, R. A. C. and Cesarino, I. 2023. The plant cell wall: advances and current perspectives - Editorial. Frontiers in Plant Science. 14, p. 1235749. https://doi.org/10.3389/fpls.2023.1235749
Effects of hotter, drier conditions on gaseous losses from nitrogen fertilisers
A - Papers appearing in refereed journals
Drame, M., Carswell, A. M., Roberts, W., Hood, J., Jemo, M., Heuer, S., Kirk, G., Pawlett, M. and Misselbrook, T. H. 2023. Effects of hotter, drier conditions on gaseous losses from nitrogen fertilisers. Journal of Environmental Management. 345, p. 118671. https://doi.org/10.1016/j.jenvman.2023.118671
Real-Time Quantitative PCR - Primer Design, Reference Gene Selection, Calculations and Statistics
A - Papers appearing in refereed journals
Chen, Z., Halford, N. G. and Liu, C. 2023. Real-Time Quantitative PCR - Primer Design, Reference Gene Selection, Calculations and Statistics. Metabolites. 13 (7), p. 806. https://doi.org/10.3390/metabo13070806
High temperature tolerance in a novel, high-quality Phaseolus vulgaris breeding line is due to maintenance of pollen viability and successful germination on the stigma
A - Papers appearing in refereed journals
Rose, T., Lowe, C., Miret, J. A., Walpole, H., Halsey, K., Venter, E., Urban, M. O., Buendia, H. F., Kurup, S., O’Sullivan, D., Beebe, S. and Heuer, S. 2023. High temperature tolerance in a novel, high-quality Phaseolus vulgaris breeding line is due to maintenance of pollen viability and successful germination on the stigma. Plants - Basel. 12 (13), p. 2491. https://doi.org/10.3390/plants12132491
PHOSPHORUS-STARVATION TOLERANCE 1 (OsPSTOL1) is prevalent in upland rice and enhances root growth and hastens low phosphate signaling in wheat
A - Papers appearing in refereed journals
Kettenburg, A. T., Lopez, M. A., Yogendra, K., Prior, M. J., Rose, T., Bimson, S., Heuer, S., Roy, S. J. and Bailey-Serres, J. 2023. PHOSPHORUS-STARVATION TOLERANCE 1 (OsPSTOL1) is prevalent in upland rice and enhances root growth and hastens low phosphate signaling in wheat. Plant, Cell and Environment. https://doi.org/10.1111/pce.14588
Inhibition of Rice Germination by Ustiloxin A Involves Alteration in Carbon Metabolism and Amino Acid Utilization
A - Papers appearing in refereed journals
Fu, X., Jin, Y., Paul, M. J., Yuan, M., Liang, X., Cui, R., Huang, Y-J., Peng, W. and Liang, X. 2023. Inhibition of Rice Germination by Ustiloxin A Involves Alteration in Carbon Metabolism and Amino Acid Utilization. Frontiers in Plant Science. 14, p. 1168985. https://doi.org/10.3389/fpls.2023.1168985
Uncovering plant epigenetics: new insights into cytosine methylation in rye genomes
A - Papers appearing in refereed journals
Kaur, N., Nayakoti, S., Brock, T. and Halford, N. G. 2023. Uncovering plant epigenetics: new insights into cytosine methylation in rye genomes. Journal of Experimental Botany. 74 (12), pp. 3395-3398. https://doi.org/10.1093/jxb/erad144
A high soluble-fibre allele in wheat encodes a defective cell wall peroxidase responsible for dimerization of ferulate moieties on arabinoxylan
A - Papers appearing in refereed journals
Mitchell, R. A. C., Oszvald, M., Pellny, T. K., Freeman, J., Halsey, K., Sparks, C. A., Huttly, A. K., Specel, S., Leverington-Waite, M., Griffiths, S., Shewry, P. R. and Lovegrove, A. 2023. A high soluble-fibre allele in wheat encodes a defective cell wall peroxidase responsible for dimerization of ferulate moieties on arabinoxylan. bioRxiv. https://doi.org/10.1101/2023.03.08.531735
Modification of plant cell walls with hydroxycinnamic acids by BAHD acyltransferases
A - Papers appearing in refereed journals
Chandrakanth, N. N., Zhang, C. C., Freeman, J., de Souza, W. R., Bartley, L. E. and Mitchell, R. A. C. 2023. Modification of plant cell walls with hydroxycinnamic acids by BAHD acyltransferases. Frontiers in Plant Science. 13, p. 1088879. https://doi.org/10.3389/fpls.2022.1088879
Nutritional and tissue-specific regulation of cytochrome P450 CYP711A MAX1 homologues and strigolactone biosynthesis in wheat
A - Papers appearing in refereed journals
Sigalas, P., Buchner, P. H., Thomas, S. G., Jamois, F., Arkourn, M., Yvin, J.- C., Bennett, M. J. and Hawkesford, M. J. 2023. Nutritional and tissue-specific regulation of cytochrome P450 CYP711A MAX1 homologues and strigolactone biosynthesis in wheat. Journal of Experimental Botany. 74 (6), pp. 1890-1910. https://doi.org/10.1093/jxb/erad008
Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial.
A - Papers appearing in refereed journals
Raffan, S., Oddy, J., Mead, A., Barker, G., Curtis, T. Y., Usher, S. L., Burt, C. and Halford, N. G. 2023. Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial. Plant Biotechnology Journal. 21 (6), pp. 1097-1099. https://doi.org/10.1111/pbi.14026
Genetic diversity and population structure analysis of barley landraces from Shanghai region using genotyping-by-sequencing
A - Papers appearing in refereed journals
Li, L., Halford, N. G., Wang, H., Zong, Y., Guo, Z., Lu, R., Liu, C. and Chen, Z. 2023. Genetic diversity and population structure analysis of barley landraces from Shanghai region using genotyping-by-sequencing. Phyton. 92 (4), pp. 1275-1287. https://doi.org/10.32604/phyton.2023.026946
Accounting for environmental variation in the free asparagine content of wheat grain
A - Papers appearing in refereed journals
Oddy, J., Elmore, S. and Halford, N. G. 2023. Accounting for environmental variation in the free asparagine content of wheat grain. Journal of Food Composition and Analysis - JFCA. 120, p. 105333. https://doi.org/10.1016/j.jfca.2023.105333
Reducing dietary acrylamide exposure from wheat products through crop management and imaging
A - Papers appearing in refereed journals
Oddy, J., Addy, J., Mead, A., Hall, C., Mackay, C., Ashfield, T., Mcdiarmid, F., Curtis, T. Y., Raffan, S., Wilkinson, M. D., Elmore, J. S., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Reducing dietary acrylamide exposure from wheat products through crop management and imaging. Journal of Agricultural and Food Chemistry - JAFC. 71 (7), pp. 3403-3413. https://doi.org/10.1021/acs.jafc.2c07208
Genetic control of grain amino acid composition in a UK soft wheat mapping population
A - Papers appearing in refereed journals
Oddy, J., Chhetry, M., Awal, R., Addy, J., Wilkinson, M. D., Smith, D., King, R., Hall, C., Testa, R., Murray, E., Raffan, S., Curtis, T. Y., Wingen, L., Griffiths, S., Berry, S., Elmore, S. J., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Genetic control of grain amino acid composition in a UK soft wheat mapping population. The Plant Genome. 16 (4), p. e20335. https://doi.org/10.1002/tpg2.20335
Improving crop yield potential Underlying biological processes and future prospects
A - Papers appearing in refereed journals
Burgess, A. J., Masclaux-Daubresse, C., Strittmatter, G., Weber, A. P. M., Taylor, S. H., Harbinson, J., Yin, X., Freeman, S. E., Paul, M. J., Westhoff, P., Loreto, F., Ceriotti, A., Saltenis, V. L. R., Pribil, M., Nacry, P., Scharff, L. B., Jensen, P. E., Muller, B., Cohan, J., Foulkes, J., Rogowsky, P., Debaeke, P., Meyer, C., Nelissen, H., Inze, D., Lankhorst, R. K., Parry, M. A. J., Murchie, E. H. and Baekelandt, A. 2022. Improving crop yield potential Underlying biological processes and future prospects. Food and Energy Security. p. e435. https://doi.org/10.1002/fes3.435
Diverged subpopulations in tropical Urochloa (Brachiaria) forage species indicate a role for facultative apomixis and varying ploidy in their population structure and evolution
A - Papers appearing in refereed journals
Higgins, J., Tomaszewska, P., Pellny, T. K., Castiblanco, V., Arango, J., Tohme, J., Schwarzacher, T., Mitchell, R. A. C., Heslop-Harrison, J. S. and Vega, J. J. D. 2022. Diverged subpopulations in tropical Urochloa (Brachiaria) forage species indicate a role for facultative apomixis and varying ploidy in their population structure and evolution. Annals of Botany. 130 (5), pp. 657-669. https://doi.org/10.1093/aob/mcac115
Proanthocyanidin Biosynthesis in the Developing Wheat Seed Coat Investigated by Chemical and RNA-seq Analysis
A - Papers appearing in refereed journals
Phillips, A. L., Vaughan, S., Baker, J., Primavesi, L. F., Patil, A., King, R., Hassani-Pak, K., Kulasekaran, S., Coghill, J., Ward, J. L. and Huttly, A. K. 2022. Proanthocyanidin Biosynthesis in the Developing Wheat Seed Coat Investigated by Chemical and RNA-seq Analysis. Plant Direct. 6 (10), p. e453. https://doi.org/10.1002/pld3.453
Novel molecules and target genes for vegetative heat tolerance in wheat
A - Papers appearing in refereed journals
Rose, T., Wilkinson, M. D., Lowe, C., Xu, J., Hughes, D. J., Hassall, K. L., Hassani-Pak, K., Amberkar, S., Noleto-Dias, C., Ward, J. L. and Heuer, S. 2022. Novel molecules and target genes for vegetative heat tolerance in wheat. Plant Environmental Interactions. 3 (6), pp. 264-289. https://doi.org/10.1002/pei3.10096
Integration of embryo–endosperm interaction into a holistic and dynamic picture of seed development using a rice mutant with notched-belly kernels
A - Papers appearing in refereed journals
Tao, Y., An, L., Xiao, F., Lia, G, Ding, Y, Paul, M. J. and Liu, Z. 2022. Integration of embryo–endosperm interaction into a holistic and dynamic picture of seed development using a rice mutant with notched-belly kernels. The Crop Journal. 10 (3), pp. 729-742. https://doi.org/10.1016/j.cj.2021.10.007
Epigenetic switch reveals CRISPR/Cas9 response to cytosine methylation in plants: Comment
A - Papers appearing in refereed journals
Raffan, S., Kaur, N. and Halford, N. G. 2022. Epigenetic switch reveals CRISPR/Cas9 response to cytosine methylation in plants: Comment. New Phytologist. 235 (6), pp. 2146-2148. https://doi.org/10.1111/nph.18405