Plant Sciences and the Bioeconomy

TitlePlant Sciences and the Bioeconomy
TypeScience Department
InstituteRothamsted Research
HeadFreddie Theodoulou
Executive AssistantSue Steele

Outputs

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Nematicidal effects of cysteine proteinases and methods of use thereof to treat nematode infestation. International patent application WO 2008/087555

H2 - Patents applied for
Curtis, R. H. C., Buttle, D., Behnke, J., Duce, I., Shewry, P. R., Kurup, S. and Kerry, B. R. 2008. Nematicidal effects of cysteine proteinases and methods of use thereof to treat nematode infestation. International patent application WO 2008/087555.

Establishing substantial equivalence: metabolomics

B - Book chapters etc edited externally
Beale, M. H., Ward, J. L. and Baker, J. M. 2008. Establishing substantial equivalence: metabolomics. in: Shewry, P. R. and Jones, H. D. (ed.) Transgenic wheat, barley and oats. Methods in molecular biology, vol.478 Humana Press, New York. pp. 289-303

Biolistics transformation of wheat

B - Book chapters etc edited externally
Sparks, C. A. 2008. Biolistics transformation of wheat. in: Shewry, P. R. and Jones, H. D. (ed.) Transgenic wheat, barley and oats. Methods in molecular biology, vol. 478 Humana Press, New York. pp. 71-92

Selection of transformed plants

B - Book chapters etc edited externally
Sparks, C. A. 2008. Selection of transformed plants. in: Shewry, P. R. and Jones, H. D. (ed.) Transgenic wheat, barley and oats. Methods in molecular biology, vol. 478 Humana Press, New York. pp. 23-37

Promoter sequences for defining transgene expression

B - Book chapters etc edited externally
Sparks, C. A. 2008. Promoter sequences for defining transgene expression. in: Shewry, P. R. and Jones, H. D. (ed.) In %Transgenic wheat, barley and oats. Methods in molecular biology, vol. 478 Humana Press, New York. pp. 171-184

Identification and genetic mapping of variant forms of puroindoline b expressed in developing wheat grain

A - Papers appearing in refereed journals
Wilkinson, M. D., Wan, Y., Tosi, P., Leverington, M., Snape, J., Mitchell, R. A. C. and Shewry, P. R. 2008. Identification and genetic mapping of variant forms of puroindoline b expressed in developing wheat grain. Journal of Cereal Science. 48, pp. 722-728. https://doi.org/10.1016/j.jcs.2008.03.007

The HEALTHGRAIN cereal diversity screen: concept, results and prospects

A - Papers appearing in refereed journals
Ward, J. L., Poutanen, K., Gebruers, K., Piironen, V., Lampi, A-M., Nystrom, L., Andersson, A. A. M., Aman, P., Boros, D., Rakszegi, M., Bedo, Z. and Shewry, P. R. 2008. The HEALTHGRAIN cereal diversity screen: concept, results and prospects. Journal of Agricultural and Food Chemistry - JAFC. 56 (21), pp. 9699-9709. https://doi.org/10.1021/jf8009574

Phytochemical and fiber components in oat varieties in the HEALTHGRAIN diversity screen

A - Papers appearing in refereed journals
Shewry, P. R., Piironen, V., Lampi, A-M., Nystrom, L., Li, L., Rakszegi, M., Fras, A., Boros, D., Gebruers, K., Courtin, C. M., Delcour, J. A., Andersson, A. A. M., Dimberg, L., Bedo, Z. and Ward, J. L. 2008. Phytochemical and fiber components in oat varieties in the HEALTHGRAIN diversity screen. Journal of Agricultural and Food Chemistry - JAFC. 56, pp. 9777-9784. https://doi.org/10.1021/jf801880d

Phytochemicals and dietary fiber components in rye varieties in the HEALTHGRAIN diversity screen

A - Papers appearing in refereed journals
Nystrom, L., Lampi, A-M., Andersson, A. A. M., Kamal-Eldin, A., Gebruers, K., Courtin, C. M., Delcour, J. A., Li, L., Ward, J. L., Fras, A., Boros, D., Rakszegi, M., Bedo, Z., Shewry, P. R. and Piironen, V. 2008. Phytochemicals and dietary fiber components in rye varieties in the HEALTHGRAIN diversity screen. Journal of Agricultural and Food Chemistry - JAFC. 56, pp. 9758-9766. https://doi.org/10.1021/jf801065r

Natural variation in responsiveness of Arabidopsis thaliana to methyl jasmonate is developmentally regulated

A - Papers appearing in refereed journals
Matthes, M. C., Pickett, J. A. and Napier, J. A. 2008. Natural variation in responsiveness of Arabidopsis thaliana to methyl jasmonate is developmentally regulated. Planta. 228, pp. 1021-1028. https://doi.org/10.1007/s00425-008-0804-3

Phenolic acids in wheat varieties in the HEALTHGRAIN diversity screen

A - Papers appearing in refereed journals
Li, L., Shewry, P. R. and Ward, J. L. 2008. Phenolic acids in wheat varieties in the HEALTHGRAIN diversity screen. Journal of Agricultural and Food Chemistry - JAFC. 56, pp. 9732-9739. https://doi.org/10.1021/jf801069s

The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development

A - Papers appearing in refereed journals
Bach, L., Michaelson, L. V., Haslam, R. P., Bellec, Y., Gissot, L., Marion, J., Da Costa, M., Boutin, J-P., Miquel, M., Tellier, F., Domergue, F., Markham, J. E., Beaudoin, F., Napier, J. A. and Faure, J-D. 2008. The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development. Proceedings of the National Academy of Sciences. 105, pp. 14727-14731. https://doi.org/10.1073/pnas.0805089105

Phytochemical and dietary fiber components in barley varieties in the HEALTHGRAIN diversity screen

A - Papers appearing in refereed journals
Andersson, A. A. M., Lampi, A-M., Nystrom, L., Piironen, V., Li, L., Ward, J. L., Gebruers, K., Courtin, C. M., Delcour, J. A., Boros, D., Fras, A., Dynkowska, W., Rakszegi, M., Bedo, Z., Shewry, P. R. and Aman, P. 2008. Phytochemical and dietary fiber components in barley varieties in the HEALTHGRAIN diversity screen. Journal of Agricultural and Food Chemistry - JAFC. 56, pp. 9767-9776. https://doi.org/10.1021/jf802037f

Investigating wheat functionality through breeding and end use (FQS 23)

D1 - Technical reports: non-confidential
Millar, S. J., Snape, J., Ward, J. L., Shewry, P. R., Belton, P., Boniface, K. and Summers, R. 2008. Investigating wheat functionality through breeding and end use (FQS 23). Campden and Chorleywood Food Research Association, Chipping Campden.

Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm

C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C. G., Baldwin, T., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2008. Discovery of novel e1F4 alleles conferring broad spectrum resistance to bymoviruses by exploiting genetic diversity of natural barley germplasm. Abstracts 7th Symposium of the International Working Group on Plant Viruses with Fungal Vectors, Quedlinburg, 31 August - 4 September 2008 . pp. 29

Understanding the relationship between DNA methylation and phenotypic plasticity in crop plants

C2 - Non-edited contributions to conferences
Amoah, S., Wilkinson, M. D., Dunwell, J. and King, G. J. 2008. Understanding the relationship between DNA methylation and phenotypic plasticity in crop plants. https://doi.org/10.1016/j.cbpa.2008.04.364

Co-ordinated expression of amino acid metabolism in response to N and S deficiency during wheat grain filling

A - Papers appearing in refereed journals
Howarth, J. R., Parmar, S., Jones, J., Shepherd, C. E., Corol, D. I., Galster, A. M., Hawkins, N. D., Miller, S. J., Baker, J. M., Verrier, P. J., Ward, J. L., Beale, M. H., Barraclough, P. B. and Hawkesford, M. J. 2008. Co-ordinated expression of amino acid metabolism in response to N and S deficiency during wheat grain filling. Journal of Experimental Botany. 59, pp. 3675-3689. https://doi.org/10.1093/jxb/ern218

Detailed analysis of the expression of an alpha-gliadin promoter and the deposition of alpha-gliadin protein during wheat grain development

A - Papers appearing in refereed journals
Van Herpen, T. W. J. M., Riley, M., Sparks, C. A., Jones, H. D., Gritsch, C., Dekking, E. H., Hamer, R. J., Bosch, D., Salentijn, E. M. J., Smulders, M. J. M., Shewry, P. R. and Gilissen, L. J. W. J. 2008. Detailed analysis of the expression of an alpha-gliadin promoter and the deposition of alpha-gliadin protein during wheat grain development. Annals of Botany. 102, pp. 331-342. https://doi.org/10.1093/aob/mcn114

The sensitivity of photosynthesis to phosphorus deficiency differs between C3 and C4 tropical grasses

A - Papers appearing in refereed journals
Ghannoum, O., Paul, M. J., Ward, J. L., Beale, M. H., Corol, D. I. and Conroy, J. P. 2008. The sensitivity of photosynthesis to phosphorus deficiency differs between C3 and C4 tropical grasses. Functional Plant Biology. 35, pp. 213-221. https://doi.org/10.1071/FP07256

Plant ABC proteins - a unified nomenclature and updated inventory

A - Papers appearing in refereed journals
Verrier, P. J., Bird, D., Burla, B., Dassa, E., Forestier, C., Geisler, M., Klein, M., Kolukisaoglu, U., Lee, Youngsook, Martinoia, E., Murphy, A., Rea, P. A., Samuels, L., Shulz, B., Spalding, E. J., Yazaki, K. and Theodoulou, F. L. 2008. Plant ABC proteins - a unified nomenclature and updated inventory. Trends in Plant Science. 13, pp. 151-159. https://doi.org/10.1016/j.tplants.2008.02.001

cis- Jasmone induces Arabidopsis genes that affect the chemical ecology of multitrophic interactions with aphids and their parasitoids

A - Papers appearing in refereed journals
Bruce, T. J. A., Matthes, M. C., Chamberlain, K., Woodcock, C. M., Mohib, A., Webster, B., Smart, L. E., Birkett, M. A., Pickett, J. A. and Napier, J. A. 2008. cis- Jasmone induces Arabidopsis genes that affect the chemical ecology of multitrophic interactions with aphids and their parasitoids. Proceedings of the National Academy of Sciences. 105, pp. 4553-4558. https://doi.org/10.1073/pnas.0710305105

The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants

A - Papers appearing in refereed journals
Rensing, S. A., Lang, D., Zimmer, A. D., Terry, A., Salamov, A., Shapiro, H., Nishiyama, T., Perroud, P-F., Lindquist, E. A., Kamisugi, Y., Tanahashi, T., Sakakibara, K., Fujita, T., Oishi, K., Shin, T., Kuroki, Y., Toyoda, A., Theodoulou, F. L., Verrier, P. J., Quatrano, R. S. and Boore, J. L. 2008. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science - AAAS. 319 (5859), pp. 64-69. https://doi.org/10.1126/science.1150646

Nucleic Acid (Patent CA 2641425 A1)

H2 - Patents applied for
Napier, J. A., Sayanova, O. V. and Venegas, C. M. 2007. Nucleic Acid (Patent CA 2641425 A1). CA 2641425 A1

Nucleic Acid (Patent WO 2007/093776 A2)

H2 - Patents applied for
Napier, J. A., Sayanova, O. V. and Venegas, C. M. 2007. Nucleic Acid (Patent WO 2007/093776 A2) . WO 2007/093776 A2

Nucleic Acids Which Encode Delta9-elongases, Delta8-desaturases And Delta5-desaturases, Uses And Processes Thereof (Patent CA 3006116 A1)

H2 - Patents applied for
Napier, J. A., Sayanova, O. V. and Venegas, C. M. 2007. Nucleic Acids Which Encode Delta9-elongases, Delta8-desaturases And Delta5-desaturases, Uses And Processes Thereof (Patent CA 3006116 A1) . CA 3006116 A1

Process For The Production Of Delta5-unsaturated Fatty Acids In Transgenic Organisms (Patent US 2007/0136892 A1)

H2 - Patents applied for
Zank, T., Napier, J. A. and Sayanova, O. V. 2007. Process For The Production Of Delta5-unsaturated Fatty Acids In Transgenic Organisms (Patent US 2007/0136892 A1) . US 2007/0136892 A1

Process For The Production Of Delta 5-unsaturated Fatty Acids In Transgenic Organisms (Patent EP 1790731 A2)

H2 - Patents applied for
Zank, T., Sayanova, O. V. and Napier, J. A. 2007. Process For The Production Of Delta 5-unsaturated Fatty Acids In Transgenic Organisms (Patent EP 1790731 A2) . EP 1790731 A2

Process For The Production Of .delta.5-unsaturated Fatty Acids In Transgenic Organisms (Patent CA 2567132 A1)

H2 - Patents applied for
Zank, T., Sayanova, O. V. and Napier, J. A. 2007. Process For The Production Of .delta.5-unsaturated Fatty Acids In Transgenic Organisms (Patent CA 2567132 A1). CA 2567132 A1

Method For The Production Of .gamma.-linolenic Acid And/or Stearidonic Acid In Transgenic Brassicaceae And Linaceae (Patent CA 2625505 A1)

H2 - Patents applied for
Venegas, C. M., Sayanova, O. V. and Napier, J. A. 2007. Method For The Production Of .gamma.-linolenic Acid And/or Stearidonic Acid In Transgenic Brassicaceae And Linaceae (Patent CA 2625505 A1). CA 2625505 A1

Method For The Production Of ?-linolenic Acid And/or Stearidonic Acid In Transgenic Brassicaceae And Linaceae (Patent WO 2007/051577 A2)

H2 - Patents applied for
Napier, J. A., Sayanova, O. V. and Venegas, C. M. 2007. Method For The Production Of ?-linolenic Acid And/or Stearidonic Acid In Transgenic Brassicaceae And Linaceae (Patent WO 2007/051577 A2) . WO 2007/051577 A2

Process For The Production Of Arachidonic Acid And/or Eicosapentaenoic Acid (Patent WO 2007/042510 A2)

H2 - Patents applied for
Napier, J. A. and Sayanova, O. V. 2007. Process For The Production Of Arachidonic Acid And/or Eicosapentaenoic Acid (Patent WO 2007/042510 A2). WO 2007/042510 A2

Process For The Production Of Arachidonic Acid And/or Eicosapentaenoic Acid (Patent CA 2621214 A1)

H2 - Patents applied for
Napier, J. A. and Sayanova, O. V. 2007. Process For The Production Of Arachidonic Acid And/or Eicosapentaenoic Acid (Patent CA 2621214 A1). CA 2621214 A1

Process For The Production Of Arachidonic Acid And/or Eicosapentaenoic Acid (Patent CA 3021294 A1)

H2 - Patents applied for
Napier, J. A. and Sayanova, O. V. 2007. Process For The Production Of Arachidonic Acid And/or Eicosapentaenoic Acid (Patent CA 3021294 A1). CA 3021294 A1

Process For The Production Of Arachidonic And/or Eicosapentaenoic Acid (Patent GB 2431158 A)

H2 - Patents applied for
Sayanova, O. V. and Napier, J. A. 2007. Process For The Production Of Arachidonic And/or Eicosapentaenoic Acid (Patent GB 2431158 A) . GB 2431158 A

Signalling mechanisms in the regulation of vacuolar ion release in guard cells

A - Papers appearing in refereed journals
Macrobbie, E. A. C. and Kurup, S. 2007. Signalling mechanisms in the regulation of vacuolar ion release in guard cells. New Phytologist. 175, pp. 630-640. https://doi.org/10.1111/j.1469-8137.2007.02131.x

Developments in aspects of ecological phytochemistry: the role of cis -jasmone in inducible defence systems in plants

A - Papers appearing in refereed journals
Pickett, J. A., Birkett, M. A., Bruce, T. J. A., Chamberlain, K., Gordon-Weeks, R., Matthes, M. C., Napier, J. A., Smart, L. E. and Woodcock, C. M. 2007. Developments in aspects of ecological phytochemistry: the role of cis -jasmone in inducible defence systems in plants. Phytochemistry. 68 (22-24), pp. 2937-2945. https://doi.org/10.1016/j.phytochem.2007.09.025

Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant

C2 - Non-edited contributions to conferences
Urban, M., Antoniw, J. F., Allwood, W., Beacham, A., Ward, J. L., Beale, M. H. and Hammond-Kosack, K. E. 2007. Phenotypic and metabolomic analyses of the Fusarium graminearum SNF1 mutant. Abstracts 13th International Congress on Molecular Plant-Microbe Interactions, Sorrento, 21-27 July 2007 . pp. 212

Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis

A - Papers appearing in refereed journals
Carrera, E., Holman, T., Medhurst, A., Dietrich, D., Footitt, S., Theodoulou, F. L. and Holdsworth, M. J. 2007. Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis. The Plant Journal. 53 (2), pp. 214-224. https://doi.org/10.1111/j.1365-313X.2007.03331.x

Stressful 'memories' of plants: evidence and possible mechanisms

A - Papers appearing in refereed journals
Bruce, T. J. A., Matthes, M. C., Napier, J. A. and Pickett, J. A. 2007. Stressful 'memories' of plants: evidence and possible mechanisms. Plant Science. 173, pp. 603-608. https://doi.org/10.1016/j.plantsci.2007.09.002

Decreased shoot stature and grain alpha-amylase activity following ectopic expression of a gibberellin 2-oxidase gene in transgenic wheat

A - Papers appearing in refereed journals
Appleford, N. E., Wilkinson, M. D., Ma, Q., Evans, D. J., Stone, M. C., Pearce, S. P., Powers, S. J., Thomas, S. G., Jones, H. D., Phillips, A. L., Hedden, P. and Lenton, J. R. 2007. Decreased shoot stature and grain alpha-amylase activity following ectopic expression of a gibberellin 2-oxidase gene in transgenic wheat. Journal of Experimental Botany. 58, pp. 3213-3226. https://doi.org/10.1093/jxb/erm166