Sustainable Soils and Crops

TitleSustainable Soils and Crops
TypeScience Department
InstituteRothamsted Research
HeadMartin Broadley
Executive AssistantSally Murdoch
Natalia Deas

Outputs

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Microbial metabolic response to winter warming stabilizes soil carbon

A - Papers appearing in refereed journals
Tian, J., Zong, N., Harley, I. P., He, N., Zhang, J., Powlson, D. S., Zhou, J., Kuzyakov, Y., Zhang, F., Yu, G. and Dungait, J. A. J. 2021. Microbial metabolic response to winter warming stabilizes soil carbon. Global Change Biology. 27 (10), pp. 2011-2028. https://doi.org/10.1111/gcb.15538

Advances in understanding of nitrogen (N) uptake by plant roots

B - Book chapters etc edited externally
Hawkesford, M. J. and Whalley, W. R. 2021. Advances in understanding of nitrogen (N) uptake by plant roots. in: Gregory, P. (ed.) Understanding and improving crop root function UK Burleigh Dodds.

Local impacts of climate change on winter wheat in Great Britain

A - Papers appearing in refereed journals
Putelat, T., Whitmore, A. P., Senapati, N. and Semenov, M. A. 2021. Local impacts of climate change on winter wheat in Great Britain. Royal Society Open Science. 8 (6), p. 201669. https://doi.org/10.1098/rsos.201669

Assessing future drought risks and wheat yield losses in England

A - Papers appearing in refereed journals
Clarke, D., Hess, T. M., Haro-Monteagudo, D., Semenov, M. A. and Knox, J. W 2021. Assessing future drought risks and wheat yield losses in England. Agricultural and Forest Meteorology. 297, p. 108248. https://doi.org/10.1016/j.agrformet.2020.108248

Nitrogen challenges and opportunities for agricultural and environmental science in India

A - Papers appearing in refereed journals
Moring, A., Hooda, S., Raghuram, N., Adhya, T. K., Ahmad, A., Bandyopadhyay, S. K., Barsby, T., Beig, G., Bentley, A., Bhatia, A., Dragosits, U., Drewer, J., Foulkes, J., Ghude, S. D., Gupta, R., Jain, N., Kumar, D., Kumar, R. M., Ladha, J. K., Mandal, P. K., Neeraja, C. N., Pandey, R., Pathak, H., Pawar, P., Pellny, T. K., Poole, P., Price, A., Rao D.L.N., Reay, D. S., Singh, N. K., Sinha, S. K., Srivastava, R. K., Shewry, P. R., Smith, J., Steadman, C. E., Subrahmanyam, D., Surekha, K., Venkatesh, K., Varinderpal-Singh., Uwizeye, A., Vieno, M. and Sutton, M. A. 2021. Nitrogen challenges and opportunities for agricultural and environmental science in India. Frontiers in Sustainable Food Systems. 5, p. 505347. https://doi.org/10.3389/fsufs.2021.505347

Dynamics of soil phosphorus measured by ammonium lactate extraction as a function of the soil phosphorus balance and soil properties

A - Papers appearing in refereed journals
Amery, F., Vandecasteele, B., D'Hose, T., Nawara, S., Elsen, A., Odeurs, W., Vandendriessche, H., Arlotti, D., McGrath, S. P., Cougnon, M. and Smolders, E. 2021. Dynamics of soil phosphorus measured by ammonium lactate extraction as a function of the soil phosphorus balance and soil properties. Geoderma. 385 (March), p. 114855. https://doi.org/10.1016/j.geoderma.2020.114855

The role of gene flow and chromosomal instability in shaping the bread wheat genome

A - Papers appearing in refereed journals
Przewieslik-Allen, A. M., Wilkinson, P. A., Burridge, A. J., Winfield, M. O., Dai, X., Beaumont, M., King, J., Yang, C-Y., Griffiths, S., Wingen, L. U., Horsnell, R., Bentley, A. R., Shewry, P. R., Barker, G. L. A. and Edwards, K. J. 2021. The role of gene flow and chromosomal instability in shaping the bread wheat genome. Nature Plants. 7, p. 172–183. https://doi.org/10.1038/s41477-020-00845-2

The effect of organic carbon content on soil compression characteristics

A - Papers appearing in refereed journals
Suravi, K., Attenborough, K., Taherzadeh, S., Macdonald, A. J., Powlson, D. S., Ashton, R. W., Suravi, K. N. and Whalley, W. R. 2021. The effect of organic carbon content on soil compression characteristics. Soil & Tillage Research. 209 (May), p. 104975. https://doi.org/10.1016/j.still.2021.104975

Relationship between soil carbon sequestration and the ability of soil aggregates to transport dissolved oxygen

A - Papers appearing in refereed journals
Zhang, X., Gregory, A. S., Whalley, W. R., Coleman, K., Neal, A. L., Bacq-Labreuil, A., Mooney, S. J., Crawford, J. W., Soga, K. and Illangasekare, T. H. 2021. Relationship between soil carbon sequestration and the ability of soil aggregates to transport dissolved oxygen. Geoderma. 403, p. 115370. https://doi.org/10.1016/j.geoderma.2021.115370

Vulnerability of European wheat to extreme heat and drought around flowering under future climate

A - Papers appearing in refereed journals
Senapati, N., Halford, N. G. and Semenov, M. A. 2021. Vulnerability of European wheat to extreme heat and drought around flowering under future climate. Environmental Research Letters. 16 (2), p. 024052. https://doi.org/10.1088/1748-9326/abdcf3

Defining the wheat microbiome: towards microbiome-facilitated crop production

A - Papers appearing in refereed journals
Kavamura, V. N., Mendes, R., Bargaz, A. and Mauchline, T. H. 2021. Defining the wheat microbiome: towards microbiome-facilitated crop production. Computational and structural biotechnology journal. 19, pp. 1200-1213. https://doi.org/10.1016/j.csbj.2021.01.045

N-terminal truncated RHT-1 proteins generated by translational reinitiation cause semi-dwarfing of wheat Green Revolution alleles

A - Papers appearing in refereed journals
Thomas, S. G., Van De Velde, K., Heyse, F., Kaspar, R., Van Der Straeten, D. and Rohde, A. 2021. N-terminal truncated RHT-1 proteins generated by translational reinitiation cause semi-dwarfing of wheat Green Revolution alleles. Molecular Plant. 14 (1), pp. 1-9. https://doi.org/10.1016/j.molp.2021.01.002

A comparison of soil texture measurements using mid-infrared spectroscopy (MIRS) and laser diffraction analysis (LDA) in diverse soils

A - Papers appearing in refereed journals
Thomas, C. L., Hernandez, J. M. B., Dunham, S. J., McGrath, S. P. and Haefele, S. M. 2021. A comparison of soil texture measurements using mid-infrared spectroscopy (MIRS) and laser diffraction analysis (LDA) in diverse soils. Scientific Reports. 11 (1), p. 16. https://doi.org/10.1038/s41598-020-79618-y

Investigation of the soil properties that affect Olsen P critical values in different soil types and impact on P fertiliser recommendations

A - Papers appearing in refereed journals
Tandy, S., Hawkins, J. M. B., Dunham, S. J., Hernandez, J. M. B., Granger, S. J., Yuan, H., McGrath, S. P. and Blackwell, M. S. A. 2021. Investigation of the soil properties that affect Olsen P critical values in different soil types and impact on P fertiliser recommendations. European Journal of Soil Science. 72 (4), pp. 1802-1816. https://doi.org/10.1111/ejss.13082

Reproducing analysis of Sirius model simulations of wheat yields, 1892-2016

J - Computer programs
Addy, J., Semenov, M. A. and Mead, A. 2021. Reproducing analysis of Sirius model simulations of wheat yields, 1892-2016.

Simulated wheat yields from Sirius, 1892-2016

N - Datasets
Addy, J., Semenov, M. A. and Mead, A. 2021. Simulated wheat yields from Sirius, 1892-2016.

The potential for soybean to diversify the production of plant-based protein in the UK

A - Papers appearing in refereed journals
Coleman, K., Whitmore, A. P., Hassall, K. L., Shield, I. F., Semenov, M. A., Dobermann, A., Bourhis, Y., Eskandary, A. and Milne, A. E. 2021. The potential for soybean to diversify the production of plant-based protein in the UK. Science of the Total Environment. 767, p. 144903. https://doi.org/10.1016/j.scitotenv.2020.144903

Accumulation and deposition of triacylglycerols in the starchy endosperm of wheat grain

A - Papers appearing in refereed journals
Gonzalez-Thuillier, I., Pellny, T. K., Tosi, P., Mitchell, R. A. C., Haslam, R. P. and Shewry, P. R. 2021. Accumulation and deposition of triacylglycerols in the starchy endosperm of wheat grain. Journal of Cereal Science. 98, p. 103167. https://doi.org/10.1016/j.jcs.2021.103167

Stability of farm income: The role of agricultural diversity and agri-environment scheme payments

A - Papers appearing in refereed journals
Harkness, C., Areal, F. J., Semenov, M. A., Senapati, N., Shield, I. F. and Bishop, J. 2021. Stability of farm income: The role of agricultural diversity and agri-environment scheme payments. Agricultural Systems. 187, p. 103009. https://doi.org/10.1016/j.agsy.2020.103009

Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to ABA treatment

A - Papers appearing in refereed journals
Chen, Z., Zhou, L., Jiang, P., Lu, R., Halford, N. G. and Liu, C. 2021. Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to ABA treatment . BMC Genomics. 22 (article), p. 300. https://doi.org/10.1186/s12864-021-07601-6

Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity

A - Papers appearing in refereed journals
Neal, A. L., Hughes, D. J., Clark, I. M., Jansson, J. K. and Hirsch, P. R. 2021. Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity. mSystems. 6 (3), pp. e01056-20. https://doi.org/10.1128/mSystems.01056-20

Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality

A - Papers appearing in refereed journals
Oddy, J., Alarcon-Reverte, R., Wilkinson, M. D., Ravet, K., Raffan, S., Minter, A., Mead, A., Elmore, J. S., Moreira de Almeida, I., Cryer, N., Halford, N. G. and Pearce, S. 2021. Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality. BMC Plant Biology. 21 (1), p. 302. https://doi.org/10.1186/s12870-021-03058-7

Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2

A - Papers appearing in refereed journals
Raffan, S., Sparks, C. A., Huttly, A. K., Hyde, L., Martignago, D., Mead, A., Hanley, S. J., Wilkinson, P., Barker, G., Edwards, K. J., Curtis, T. Y., Usher, S. L., Kosik, O. and Halford, N. G. 2021. Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2 . Plant Biotechnology Journal. 19 (8), pp. 1602-1613. https://doi.org/10.1111/pbi.13573

The impact of weather and increased atmospheric CO2 from 1892 to 2016 on simulated yields of UK wheat

A - Papers appearing in refereed journals
Addy, J. W. G., Ellis, R.H., Macdonald, A. J., Semenov, M. A. and Mead, A. 2021. The impact of weather and increased atmospheric CO2 from 1892 to 2016 on simulated yields of UK wheat. Journal of the Royal Society Interface. 18 (179), p. 20210250. https://doi.org/10.1098/rsif.2021.0250

KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species

A - Papers appearing in refereed journals
Hassani-Pak, K., Singh, A., Brandizi, M., Hearnshaw, J., Parsons, J. D., Amberkar, S., Phillips, A. L., Doonan, J. H. and Rawlings, C. J. 2021. KnetMiner: a comprehensive approach for supporting evidence-based gene discovery and complex trait analysis across species. Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13583

Progress on reducing acrylamide levels in potato crisps in Europe, 2002 to 2019

A - Papers appearing in refereed journals
Powers, S. J., Mottram, D. S., Curtis, A. and Halford, N. G. 2021. Progress on reducing acrylamide levels in potato crisps in Europe, 2002 to 2019. Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment. 38 (5), pp. 782-806. https://doi.org/10.1080/19440049.2020.1871083

Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel

A - Papers appearing in refereed journals
Lyra, D. H., Griffiths, C. A., Watson, A., Joynson, R., Molero, G., Igna, A. A., Hassani-Pak, K., Reynolds, M. P., Hall, A. and Paul, M. J. 2021. Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel. Food and Energy Security. p. e292. https://doi.org/10.1002/fes3.292

Wheat growth responses to soil mechanical impedance are dependent on phosphorus supply

A - Papers appearing in refereed journals
Wang, X., Shen, J., Hedden, P., Phillips, A. L., Thomas, S. G., Ge, Y., Ashton, R. W. and Whalley, W. R. 2021. Wheat growth responses to soil mechanical impedance are dependent on phosphorus supply. Soil & Tillage Research. 205, p. 104754. https://doi.org/10.1016/j.still.2020.104754

High-Throughput Estimation of Crop Traits - A review of ground and aerial phenotyping platforms

A - Papers appearing in refereed journals
Jin, X., Zarco-Tejada, P. J., Schmidhalter, U., Reynolds, M. P., Hawkesford, M. J., Varshney, R. V., Yang, T., Nie, C., Li, Z., Ming, B, Xiao, Y, Xie, Y. and Li, S. 2021. High-Throughput Estimation of Crop Traits - A review of ground and aerial phenotyping platforms . IEEE Geoscience and Remote Sensing Magazine. 9 (1), pp. 200-231. https://doi.org/10.1109/MGRS.2020.2998816

Predicting the growth of lettuce from soil infrared reflectance spectra: the potential for crop management

A - Papers appearing in refereed journals
Breure, T. S., Milne, A. E., Webster, R., Haefele, S. M., Hannam, J. A., Moreno-Rojas, S. and Corstanje, R. 2021. Predicting the growth of lettuce from soil infrared reflectance spectra: the potential for crop management. Precision Agriculture. 22, p. 226–248. https://doi.org/10.1007/s11119-020-09739-x

The effects of long-term fertilizations on soil hydraulic properties vary with scales

A - Papers appearing in refereed journals
Zhang, X., Neal, A. L., Crawford, J. W., Bacq-Labreuil, A., Akkari, E. and Rickard, W. 2021. The effects of long-term fertilizations on soil hydraulic properties vary with scales. Journal of Hydrology. 539, p. 125890. https://doi.org/10.1016/j.jhydrol.2020.125890

Wheat amino acid transporters highly expressed in grain cells regulate amino acid accumulation in grain

A - Papers appearing in refereed journals
Wan, Y., Wang, Y., Shi, Z., Rentsch, D., Ward, J. L., Hassall, K. L., Sparks, C. A., Huttly, A. K., Buchner, P. H., Powers, S. J., Shewry, P. R. and Hawkesford, M. J. 2021. Wheat amino acid transporters highly expressed in grain cells regulate amino acid accumulation in grain. PLOS ONE. 16 (2), p. e0246763. https://doi.org/10.1371/journal.pone.0246763

Genome Editing for Low-Acrylamide Wheat

F - Theses
Raffan, S. 2020. Genome Editing for Low-Acrylamide Wheat. F - Theses

Change in phytoextraction of Cd by rapeseed (Brassica napus L.) with application rate of organic acids and the impact of Cd migration from bulk soil to the rhizosphere

A - Papers appearing in refereed journals
Qiao, D., Lu, H. and Zhang, X. 2020. Change in phytoextraction of Cd by rapeseed (Brassica napus L.) with application rate of organic acids and the impact of Cd migration from bulk soil to the rhizosphere. Environmental Pollution. 267, p. 115452. https://doi.org/10.1016/j.envpol.2020.115452

Pan-European multi- crop model ensemble projections of climate change impact on wheat and grain maize

A - Papers appearing in refereed journals
Webber, H., Cooke, D., Ewert, F., Olesen, J. E., Fronzek, S., Ruane, A. C., Martre, P., Collins, B., Bindi, M., Ferrise, R., Fodor, N., Gabaldon-Leal, C., Gaiser, T., Jabloun, M., Kersebaum, K.-C., Lizaso, J. I., Lorite, I. J., Manceau, L., Moriondo, M., Nendel, C., Rodriguez, A., Ruiz-Ramos, M., Semenov, M. A., Stella, T., Stratonovitch, P. and Trombi, G. 2020. Pan-European multi- crop model ensemble projections of climate change impact on wheat and grain maize . Open Data Journal for Agricultural Research (ODjAR). 6, pp. 21-27. https://doi.org/10.18174/odjar.v6i0.16326

Data Study Group Network Final Report: Rothamsted Research

A - Papers appearing in refereed journals
Breure, T., Carmona, C. U., Ellisck, S., Evans, B., Fahmi, A., Haefele, S. M., Hassall, K. L., Loning, M., Ruiz, D. P., Shchepanovska, D. and Thomas, C. L. 2020. Data Study Group Network Final Report: Rothamsted Research. Data Study Group Network Final Report: Rothamsted Research. Zenodo. https://doi.org/10.5281/zenodo.3775489

Century long fertilization reduces stochasticity controlling grassland microbial community succession

A - Papers appearing in refereed journals
Liang, Y., Ning, D., Lu, Z., Zhang, N., Hale, L., Wu, L., Clark, I. M., McGrath, S. P., Storkey, J., Hirsch, P. R., Sun ,B. and Zhou, J. 2020. Century long fertilization reduces stochasticity controlling grassland microbial community succession. Soil Biology and Biochemistry. 151 (Dec), p. 108023. https://doi.org/10.1016/j.soilbio.2020.108023

Non‐flooding rice yield response to straw biochar and controlled‐release fertilizer

A - Papers appearing in refereed journals
Yang, X., Liu, H., Mao, X., Deng, J. and Haefele, S. M. 2020. Non‐flooding rice yield response to straw biochar and controlled‐release fertilizer. Agronomy Journal. 112 (6), pp. 4799-4809. https://doi.org/10.1002/agj2.20430

Novel integrated agricultural land management approach provides sustainable biomass feedstocks for bioplastics and supports the UK’s ‘net-zero’ target.

A - Papers appearing in refereed journals
Ni, Y., Richter, G. M., Mwabonje, O. N., Qi, A., Patel, M. K. and Woods, J. 2020. Novel integrated agricultural land management approach provides sustainable biomass feedstocks for bioplastics and supports the UK’s ‘net-zero’ target. Environmental Research Letters. 16 (1), p. 014023. https://doi.org/10.1088/1748-9326/abcf79

Geospatial and statistical interpretation of lineaments: salinity intrusion in the Kribi-Campo coastland of Cameroon

A - Papers appearing in refereed journals
Aretouyap, Z., Billa, L., Jones , M. and Richter, G. M. 2020. Geospatial and statistical interpretation of lineaments: salinity intrusion in the Kribi-Campo coastland of Cameroon. Advances in space research. 66 (4), pp. 844-853. https://doi.org/10.1016/j.asr.2020.05.002

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