Designing Future Wheat (DFW) [ISPG]
Repository project
| Project dates | 01 Apr 2017 to end of 31 Mar 2022 |
|---|---|
| Researchers | |
| Principal Investigator | Malcolm Hawkesford |
| Funder | Biotechnology and Biological Sciences Research Council |
| Project number | I0200 |
| Department | Rothamsted Research |
| Research fish code | BB/P016855/1 |
| Grant ID | BB/P016855/1 [Do not use in Researchfish] |
Outputs
Sort by: Date Title
Comparison of the impact of two key fungal signalling pathways on Zymoseptoria tritici infection reveals divergent contribution to invasive growth through distinct regulation of infection-associated genes
A - Papers appearing in refereed journals
Child, H. T., Deeks, M. J., Rudd, J. J. and Bates, S. 2023. Comparison of the impact of two key fungal signalling pathways on Zymoseptoria tritici infection reveals divergent contribution to invasive growth through distinct regulation of infection-associated genes. Molecular Plant Pathology. 24 (10), pp. 1220-1237. https://doi.org/10.1111/mpp.13365
Construction of a network describing asparagine metabolism in plants and its application to the identification of genes affecting asparagine metabolism in wheat under drought and nutritional stress
A - Papers appearing in refereed journals
Curtis, T. Y., Bo, V., Tucker A. and Halford, N. G. 2018. Construction of a network describing asparagine metabolism in plants and its application to the identification of genes affecting asparagine metabolism in wheat under drought and nutritional stress. Food and Energy Security. 7 (1), p. e00126. https://doi.org/10.1002/fes3.126
Contrasting gene expression patterns in grain of high and low asparagine wheat genotypes in response to sulphur supply
A - Papers appearing in refereed journals
Curtis, T., Raffan, S., Wan, Y., King, R., Gonzalez-Uriarte, A. and Halford, N. G. 2019. Contrasting gene expression patterns in grain of high and low asparagine wheat genotypes in response to sulphur supply. BMC Genomics. 20, p. 628. https://doi.org/10.1186/s12864-019-5991-8
Contribution of crop model structure, parameters and climate projections to uncertainty in climate change impact assessments
A - Papers appearing in refereed journals
Tao, F., Rotter, R. P., Palosuo, T., Diaz-Ambrona, C. G. H., Minguez, M. I., Semenov, M. A., Kersebaum, K. C., Nendel, C., Specka, X.., Hoffmann, H., Ewert, F., Dambrevill, A., Martre, P., Rodriguez, L., Ruiz-Ramos, M., Gaiser, T., Hohn, J. G., Salo, T., Ferrise, R., Bindi, M., Cammarano, D. and Schulman, A.H. 2018. Contribution of crop model structure, parameters and climate projections to uncertainty in climate change impact assessments. Global Change Biology. 24 (3), pp. 1291-1307. https://doi.org/10.1111/gcb.14019
CRISPR/Cas precision: do we need to worry about off-targeting in plants?
A - Papers appearing in refereed journals
Hahn, F. and Nekrasov, V. 2018. CRISPR/Cas precision: do we need to worry about off-targeting in plants? Plant Cell Reports. https://doi.org/10.1007/s00299-018-2355-9
Daisychain Search and Interactive Visualisation of Homologs in Genome Assemblies
A - Papers appearing in refereed journals
Schliebs, O., Chan, C-K. K., Bayer, P. E., Petereit, J., Singh, A., Hassani-Pak, K., Batley, J. and Edwards, D. 2021. Daisychain Search and Interactive Visualisation of Homologs in Genome Assemblies. Agronomy. 11 (12), p. 2587. https://doi.org/10.3390/agronomy11122587
Data set of enzyme fingerprinting of dietary fibre components (arabinoxylan and β-glucan) in old and modern Italian durum wheat genotypes
A - Papers appearing in refereed journals
De Santis, M. A., Kosik, O., Passmore, D., Flagella, Z., Shewry, P. R. and Lovegrove, A. 2018. Data set of enzyme fingerprinting of dietary fibre components (arabinoxylan and β-glucan) in old and modern Italian durum wheat genotypes. Data in Brief. 16 (February), pp. 1062-1068. https://doi.org/10.1016/j.dib.2017.12.029
DeepCount: In-Field Automatic Quantification of Wheat Spikes Using Simple Linear Iterative Clustering and Deep Convolutional Neural Networks
A - Papers appearing in refereed journals
Sadeghi-Tehran, P., Virlet, N., Ampe, E. M., Reyns, P. and Hawkesford, M. J. 2019. DeepCount: In-Field Automatic Quantification of Wheat Spikes Using Simple Linear Iterative Clustering and Deep Convolutional Neural Networks. Frontiers in Plant Science. 10, p. 1176. https://doi.org/10.3389/fpls.2019.01176
Delayed development of basal spikelets in wheat explains their increased floret abortion and rudimentary nature
A - Papers appearing in refereed journals
Backhaus, A. E., Griffiths, C. A., Vergara-Cruces, A., Simmonds, J., Lee, R., Morris, R. J. and Uauy, C. 2023. Delayed development of basal spikelets in wheat explains their increased floret abortion and rudimentary nature. Journal of Experimental Botany. 74 (17), pp. 5088-5103. https://doi.org/10.1093/jxb/erad233
Differentiated function and localisation of SPO11-1 and PRD3 on the chromosome axis during meiotic DSB formation in Arabidopsis thaliana
A - Papers appearing in refereed journals
Lambing, C., Kuo, P., Kim, J., Osman, K., Whitbread, A. L., Yang, J., Choi, K., Franklin, F. C. H. and Henderson, I. R. 2022. Differentiated function and localisation of SPO11-1 and PRD3 on the chromosome axis during meiotic DSB formation in Arabidopsis thaliana. PLOS Genetics. 18 (7), p. e1010298. https://doi.org/10.1371/journal.pgen.1010298
Dissecting Wheat Grain Yield Drivers in a Mapping Population in the UK
A - Papers appearing in refereed journals
Pennacchi, J. P., Carmo-Silva, E., Andralojc, P. J., Feuerhelm, D,, Powers, S. J. and Parry, M. A. J. 2018. Dissecting Wheat Grain Yield Drivers in a Mapping Population in the UK. Agronomy. 8 (6), p. 94. https://doi.org/10.3390/agronomy8060094
Dissection of environmental and physiological effects on the temperature difference between superior and inferior spikelets within a rice panicle
A - Papers appearing in refereed journals
Li, Y., Zhou, Q., He, M., Xu, H., Li, G., Ding, Y., Paul, M. J. and Liu, Z. 2021. Dissection of environmental and physiological effects on the temperature difference between superior and inferior spikelets within a rice panicle. The Crop Journal. 9, pp. 1098-1107. https://doi.org/10.1016/j.cj.2020.10.016
Distinct roles for different autophagy-associated genes in the virulence of the fungal wheat pathogen Zymoseptoria tritici
A - Papers appearing in refereed journals
Child, H. T., Deeks, M. J., Haynes, K., Rudd, J. J. and Bates, S. 2022. Distinct roles for different autophagy-associated genes in the virulence of the fungal wheat pathogen Zymoseptoria tritici. Fungal Genetics and Biology. 163, p. 103748. https://doi.org/10.1016/j.fgb.2022.103748
Diverging importance of drought stress for maize and winter wheat in Europe
A - Papers appearing in refereed journals
Webber, H, Ewert, F., Olesen, J. E., Müller, C., Fronzek, S., Ruane, A. C., Bourgault, M., Martre, P., Ababaei, B., Bindi, M., Ferrise, R., Finger, R., Fodor, N., Gabaldón-Leal, C., Gaiser, T., Jabloun, M., Kersebaum, K.-C., Lizaso, J. I., Lorie, I. J., Manceau, L., Moriondo, M., Nendel, C., Rodriguez, A., Ruiz-Ramos, M., Semenov, M. A., Siebert, S., Stella, T., Stratonovitch, P., Trombi, G. and Wallach, D. 2018. Diverging importance of drought stress for maize and winter wheat in Europe. Nature Communications. 9 (4249). https://doi.org/10.1038/s41467-018-06525-2
Do ancient types of wheat have health benefits compared with modern bread wheat?
A - Papers appearing in refereed journals
Shewry, P. R. 2018. Do ancient types of wheat have health benefits compared with modern bread wheat? Journal of Cereal Science. 79, pp. 469-476. https://doi.org/10.1016/j.jcs.2017.11.010
Dramatic changes in genetic diversity of the avirulence effector AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici
Conference poster
Stephens, C., Blyth, H., Olmez, F., McDonald, M., Solomon, P., Milgate, A., Chen, H., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2018. Dramatic changes in genetic diversity of the avirulence effector AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici. British Society of Plant Pathology Presidential Meeting, Warwick 2018. Warwick University 10 Dec 2018 https://doi.org/N/A
Drought tolerance during reproductive development is important for increasing wheat yield potential under climate change in Europe
A - Papers appearing in refereed journals
Senapati, N., Stratonovitch, P., Paul, M. J. and Semenov, M. A. 2019. Drought tolerance during reproductive development is important for increasing wheat yield potential under climate change in Europe. Journal of Experimental Botany. 70 (9), pp. 2549-2560. https://doi.org/10.1093/jxb/ery226
Editorial: CRISPR-Cas in Agriculture: Opportunities and Challenges
A - Papers appearing in refereed journals
Kumar, S., Rymarquis, L. A., Ezura, H. and Nekrasov, V. 2021. Editorial: CRISPR-Cas in Agriculture: Opportunities and Challenges. Frontiers in Plant Science. 12, p. 672329. https://doi.org/10.3389/fpls.2021.672329
Effectiveness of using representative subsets of global climate models in future crop yield projections.
A - Papers appearing in refereed journals
Qian, B., Jing, Q., Cannon, A. J., Smith, W., Grant, B., Semenov, M. A., Xu, Y. and Ma, D. 2021. Effectiveness of using representative subsets of global climate models in future crop yield projections. Scientific Reports. 11, p. 20565. https://doi.org/10.1038/s41598-021-99378-7
Effects of Organic and Conventional Crop Nutrition on Profiles of Polar Metabolites in Grain of Wheat
A - Papers appearing in refereed journals
Shewry, P. R., Rakszegi, M., Lovegrove, A., Amos, D., Corol, D. I., Tawfike, A., Miko, P. and Ward, J. L. 2018. Effects of Organic and Conventional Crop Nutrition on Profiles of Polar Metabolites in Grain of Wheat. Journal of Agricultural and Food Chemistry - JAFC. 66 (21), pp. 5346-5351. https://doi.org/10.1021/acs.jafc.8b01593
Efficient CRISPR/Cas-Mediated Targeted Mutagenesis in Spring and Winter Wheat Varieties
A - Papers appearing in refereed journals
Hahn, F., Sanjurjo-Loures, L., Sparks, C. A., Kanyuka, K. and Nekrasov, V. 2021. Efficient CRISPR/Cas-Mediated Targeted Mutagenesis in Spring and Winter Wheat Varieties. Plants - Basel. 10 (7), p. 1481. https://doi.org/10.3390/plants10071481
Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi
A - Papers appearing in refereed journals
Osborne, S., Mcmillan, V. E., White, R. P. and Hammond-Kosack, K. E. 2018. Elite UK winter wheat cultivars differ in their ability to support the colonisation of beneficial root-infecting fungi. Journal of Experimental Botany. 69 (12), pp. 3103-3115. https://doi.org/10.1093/jxb/ery136
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species
A - Papers appearing in refereed journals
Kersey, P. J., Allen, J. E., Allot, A., Barba, M., Boddu, S., Bolt, B. J., Carvalho-Silva, D., Christensen, M., Davis, P., Grabmueller, C., Kumar, N., Liu, Z., Maurel, T., Moore, B., Mcdowall, M. D., Maheswari, U., Naamati, G., Newman, V., Ong, C. K., Paulini, M., Pedro, H., Perry, E., Russell, M., Sparrow, H., Tapanari, E., Taylor, K., Vullo, A., Williams, G., Zadissia, A., Olson, A., Stein, J., Wei, S., Tello-Ruiz, M., Ware, D., Luciani, A., Potter, S., Finn, R. D., Urban, M., Hammond-Kosack, K. E., Bolser, D. M., De Silva, N., Howe, K. L., Langridge, N., Maslen, G., Staines, D. M. and Yates, A. 2018. Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Research. 46 (D1), pp. D802-D808. https://doi.org/10.1093/nar/gkx1011
Ensembl Genomes 2020-enabling non-vertebrate genomic research
A - Papers appearing in refereed journals
Cuzick, A., Howe, K. L., Contreras-Moreira, B., Silva, N. D., Maslen, G., Akanni, W., Allen, J., Alvarez-Jarreta, J., Barba, M., Bolser, D. M., Cambell, L., Carbajo, M., Chakiachvili, M., Christensen, M., Cummins, C., Cuzick, A., Davis, P., Fexova, S., Gall, A., George, N., Gil, L., Gupta, P., Hammond-Kosack, K. E., Haskell, E., Hunt, S. E., Jaiswal, P., Janacek, S. H., Kersey, P. J., Langridge, N., Maheswari, U., Maurel, T., McDowall, M. D., Moore, B., Muffato, M., Naamati, G., Naithani, S., Olson, A., Papatheodorou, I., Patricio, M., Paulini, M., Pedro, H., Perry, E., Preece, J., Rosello, M., Russell, M., Sitnik, V., Staines, D. M., Stein, J., Tello-Ruiz, M. K., Trevanion, S. J., Urban, M., Wei, S., Ware, D., Williams, G., Yates, A. D. and Flicek, P. 2020. Ensembl Genomes 2020-enabling non-vertebrate genomic research. Nucleic Acids Research. 48 (D1), pp. D689-D695. https://doi.org/10.1093/nar/gkz890
Epigenetic switch reveals CRISPR/Cas9 response to cytosine methylation in plants: Comment
A - Papers appearing in refereed journals
Raffan, S., Kaur, N. and Halford, N. G. 2022. Epigenetic switch reveals CRISPR/Cas9 response to cytosine methylation in plants: Comment. New Phytologist. 235 (6), pp. 2146-2148. https://doi.org/10.1111/nph.18405
Evidence that phosphorylation of the alpha-subunit of eIF2 does not essentially inhibit mRNA translation in wheat germ cell-free system.
A - Papers appearing in refereed journals
Zhigailov, A. V., Alexandrova, A. M., Nizkorodova, A. S., Stanbekova, G. E., Kryldakov, R. V., Karpova, O. V., Polimbetova, N. S., Halford, N. G. and Iskakov, B. K. 2020. Evidence that phosphorylation of the alpha-subunit of eIF2 does not essentially inhibit mRNA translation in wheat germ cell-free system. Frontiers in Plant Science. 11, p. 936. https://doi.org/10.3389/fpls.2020.00936
Excretion of avenanthramides, phenolic acids and their major metabolites following intake of oat bran
A - Papers appearing in refereed journals
Schar, M. Y., Corona, G., Soycan, G., Dine, C., Kristek, A., Alsahrif, S. N. S., Behrends, V., Lovegrove, A., Shewry, P. R. and Spencer, J. P. E. 2018. Excretion of avenanthramides, phenolic acids and their major metabolites following intake of oat bran. Molecular Nutrition & Food Research. 62 (2), p. 1700499. https://doi.org/10.1002/mnfr.201700499
Exploiting genetic variation in nitrogen use efficiency
A - Papers appearing in refereed journals
Hawkesford, M. J. and Griffiths, S. 2019. Exploiting genetic variation in nitrogen use efficiency. Current Opinion in Plant Biology. 49, pp. 35-42. https://doi.org/10.1016/j.pbi.2019.05.003
Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat
A - Papers appearing in refereed journals
Hammond-Kosack, M., King, R., Kanyuka, K. and Hammond-Kosack, K. E. 2021. Exploring the diversity of promoter and 5’UTR sequences in ancestral, historic and modern wheat . Plant Biotechnology Journal. https://doi.org/10.1111/pbi.13672
Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial.
A - Papers appearing in refereed journals
Raffan, S., Oddy, J., Mead, A., Barker, G., Curtis, T. Y., Usher, S. L., Burt, C. and Halford, N. G. 2023. Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial. Plant Biotechnology Journal. 21 (6), pp. 1097-1099. https://doi.org/10.1111/pbi.14026
Final grain weight is not limited by the activity of key starch-synthesising enzymes during grain filling in wheat
A - Papers appearing in refereed journals
Fahy, B., Siddiqui, H., David, L., Powers, S. J., Borrill, P., Uauy, C. and Smith, A. 2018. Final grain weight is not limited by the activity of key starch-synthesising enzymes during grain filling in wheat. Journal of Experimental Botany. 69 (22), p. 5461–5475. https://doi.org/10.1093/jxb/ery314
Foliar N Application at Anthesis Stimulates Gene Expression of Grain Protein Fractions and Alters Protein Body Distribution in Winter Wheat (Triticum aestivum L.)
A - Papers appearing in refereed journals
Rossmann, A., Buchner, P. H., Savill, G. P., Powers, S. J., Hawkesford, M. J. and Muhling, K. H. 2019. Foliar N Application at Anthesis Stimulates Gene Expression of Grain Protein Fractions and Alters Protein Body Distribution in Winter Wheat (Triticum aestivum L.) . Journal of Agricultural and Food Chemistry - JAFC. 67 (46), pp. 12709-12719. https://doi.org/10.1021/acs.jafc.9b04634
Functional evaluation of a homologue of plant rapid alkalinisation factor (RALF) peptides in Fusarium graminearum
A - Papers appearing in refereed journals
Machado, A., Walker, C., Lee, W., Urban, M. and Hammond-Kosack, K. E. 2020. Functional evaluation of a homologue of plant rapid alkalinisation factor (RALF) peptides in Fusarium graminearum . Fungal Biology. 124 (9), pp. 753-765. https://doi.org/10.1016/j.funbio.2020.05.001
Functional QTL mapping and genomic prediction of canopy height in wheat measured using a robotic field phenotyping platform
A - Papers appearing in refereed journals
Lyra, D. H., Virlet, N., Sadeghi-Tehran, P., Hassall, K. L., Wingen, L. U., Orford, S., Griffiths, S., Hawkesford, M. J. and Slavov, G. 2020. Functional QTL mapping and genomic prediction of canopy height in wheat measured using a robotic field phenotyping platform . Journal of Experimental Botany. p. erz545. https://doi.org/10.1093/jxb/erz545
Fungal G-protein-coupled receptors: mediators of pathogenesis and targets for disease control
A - Papers appearing in refereed journals
Brown, N. A., Schrevens, S., Van Dijck, P. and Goldman, G. H. 2018. Fungal G-protein-coupled receptors: mediators of pathogenesis and targets for disease control. Nature Microbiology. 3 (4), pp. 402-414. https://doi.org/10.1038/s41564-018-0127-5
Future agroclimatic conditions and implications for European grasslands.
A - Papers appearing in refereed journals
Trnka, M., Balek, J., Semenov, M. A., Semeradova, D., Belinova, M., Hlavinka, P., Olesen, J. E., Eitzinger, J., Schaumberger, A., Zahradnicek, P., Kopecky, D. and Zalud, Z. 2020. Future agroclimatic conditions and implications for European grasslands. Biologia Plantarum. 64, pp. 865-880. https://doi.org/10.32615/bp.2021.005
Genetic control of grain amino acid composition in a UK soft wheat mapping population
A - Papers appearing in refereed journals
Oddy, J., Chhetry, M., Awal, R., Addy, J., Wilkinson, M. D., Smith, D., King, R., Hall, C., Testa, R., Murray, E., Raffan, S., Curtis, T. Y., Wingen, L., Griffiths, S., Berry, S., Elmore, S. J., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Genetic control of grain amino acid composition in a UK soft wheat mapping population. The Plant Genome. 16 (4), p. e20335. https://doi.org/10.1002/tpg2.20335
Genetic diversity and population structure analysis of barley landraces from Shanghai region using genotyping-by-sequencing
A - Papers appearing in refereed journals
Li, L., Halford, N. G., Wang, H., Zong, Y., Guo, Z., Lu, R., Liu, C. and Chen, Z. 2023. Genetic diversity and population structure analysis of barley landraces from Shanghai region using genotyping-by-sequencing. Phyton. 92 (4), pp. 1275-1287. https://doi.org/10.32604/phyton.2023.026946
Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat
A - Papers appearing in refereed journals
Oszvald, M., Hassall, K. L., Hughes, D. J., Torres-Ballesteros, A., Clark, I. M., Riche, A. B. and Heuer, S. 2022. Genetic diversity in nitrogen fertilizer responses and N gas emission in modern wheat. Frontiers in Plant Science. 13, p. 816475. https://doi.org/10.3389/fpls.2022.816475
Genetic transformation of common wheat (Triticum aestivum L.) using biolistics
B - Book chapters etc edited externally
Sparks, C. A. and Doherty, A. 2020. Genetic transformation of common wheat (Triticum aestivum L.) using biolistics. in: Rustgi, S. and Luo, H. (ed.) Biolistic DNA Delivery in Plants New York Humana Press Inc.