Plant Sciences and the Bioeconomy

TitlePlant Sciences and the Bioeconomy
TypeScience Department
InstituteRothamsted Research
HeadFreddie Theodoulou
Executive AssistantSue Steele

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Targeted enhancement of glutamate-to-gamma-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner

A - Papers appearing in refereed journals
Fait, A., Nunes Nesi, A., Angelovici, R., Lehmann, M., Anh Pham, P., Song, L., Haslam, R. P., Napier, J. A., Galili, G. and Fernie, A. R. 2011. Targeted enhancement of glutamate-to-gamma-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner. Plant Physiology. 157, pp. 1026-1042. https://doi.org/10.1104/pp.111.179986

LC-MS/MS methods for absolute quantification and identification of proteins associated with chimeric plant oil bodies

A - Papers appearing in refereed journals
Capuano, F., Bond, N. J., Gatto, L., Beaudoin, F., Napier, J. A., Benvenuto, E., Lilley, K. S. and Baschieri, S. 2011. LC-MS/MS methods for absolute quantification and identification of proteins associated with chimeric plant oil bodies. Analytical Chemistry. 83, pp. 9267-9272. https://doi.org/10.1021/ac201733m

Very-long-chain fatty acids are required for cell plate formation during cytokinesis in Arabidopsis thaliana

A - Papers appearing in refereed journals
Bach, L., Gissot, L., Marion, J., Tellier, F., Moreau, P., Satiat-Jeunemaitre, B., Palauqui, J-C., Napier, J. A. and Faure, J-D. 2011. Very-long-chain fatty acids are required for cell plate formation during cytokinesis in Arabidopsis thaliana. Journal Of Cell Science. 124, pp. 3223-234. https://doi.org/10.1242/jcs.074575

Genotype and environment effects on the contents of vitamins B1, B2, B3 and B6 in wheat grain

A - Papers appearing in refereed journals
Shewry, P. R., Van Schaik, F., Ravel, C., Charmet, G., Rakszegi, M., Bedo, Z. and Ward, J. L. 2011. Genotype and environment effects on the contents of vitamins B1, B2, B3 and B6 in wheat grain. Journal of Agricultural and Food Chemistry - JAFC. 59, pp. 10564-10571. https://doi.org/10.1021/jf202762b

Improving the health benefits of wheat

C1 - Edited contributions to conferences/learned societies
Shewry, P. R., Ward, J. L., Zhao, F-J., Ravel, C., Charmet, G., Lafiandra, D. and Bedo, Z. 2011. Improving the health benefits of wheat. Czech Academy Agricultural Sciences.

Postprandial glycemia, insulinemia and satiety responses in healthy subjects after whole grain rye bread made from different rye varieties. 1

A - Papers appearing in refereed journals
Rosen, L. A. H., Ostman, E. M., Shewry, P. R., Ward, J. L., Andersson, A. A. M., Piironen, V., Lampi, A-M., Rakszegi, M., Bedo, Z. and Bjorck, I. M. E. 2011. Postprandial glycemia, insulinemia and satiety responses in healthy subjects after whole grain rye bread made from different rye varieties. 1. Journal of Agricultural and Food Chemistry - JAFC. 59, pp. 12139-12148. https://doi.org/10.1021/jf2019825

Conservation of targeting but divergence in function and quality control of peroxisomal ABC transporters: an analysis using cross-kingdom expression

A - Papers appearing in refereed journals
Zhang, X., De Marcos Lousa, C., Schutte-Lensink, N., Ofman, R., Wanders, R. J., Baldwin, S. A., Baker, A., Kemp, S. and Theodoulou, F. L. 2011. Conservation of targeting but divergence in function and quality control of peroxisomal ABC transporters: an analysis using cross-kingdom expression. Biochemical Journal. 436, pp. 547-557. https://doi.org/10.1042/BJ20110249

Metabolomic analysis of Arabidopsis reveals hemiterpenoid glycosides as products of a nitrate ion-regulated, carbon flux overflow

A - Papers appearing in refereed journals
Ward, J. L., Baker, J. M., Llewellyn, A. M., Hawkins, N. D. and Beale, M. H. 2011. Metabolomic analysis of Arabidopsis reveals hemiterpenoid glycosides as products of a nitrate ion-regulated, carbon flux overflow. Proceedings of the National Academy of Sciences. 108, pp. 10762-10767. https://doi.org/10.1073/pnas.1018875108

Coccolithophores: functional biodiversity, enzymes and bioprospecting

A - Papers appearing in refereed journals
Reid, E. L., Worthy, C. A., Probert, I., Ali, S. T., Love, J., Napier, J. A., Littlechild, J. A., Somerfield, P. J. and Allen, M. J. 2011. Coccolithophores: functional biodiversity, enzymes and bioprospecting. Marine Drugs. 9 (4), pp. 586-602. https://doi.org/10.3390/md9040586

New insights into cell death induced by long chain bases in Arabidopsis

G - Articles in popular magazines and other technical publications
Michaelson, L. V. 2011. New insights into cell death induced by long chain bases in Arabidopsis. New Phytologist. 191 (4), pp. 909-911. https://doi.org/10.1111/j.1469-8137.2011.03843.x

Emerging roles in plant defense for cis- jasmone-induced cytochrome P450 CYP81D11

A - Papers appearing in refereed journals
Matthes, M. C., Bruce, T. J. A., Chamberlain, K., Pickett, J. A. and Napier, J. A. 2011. Emerging roles in plant defense for cis- jasmone-induced cytochrome P450 CYP81D11. Plant Signaling and Behavior. 6, pp. 563-565. https://doi.org/10.4161/psb.6.4.14915

New frontiers in oilseed biotechnology: meeting the global demand for vegetable oils for food, feed, biofuel and industrial applications

A - Papers appearing in refereed journals
Lu, C., Napier, J. A., Clemente, T. E. and Cahoon, E. B. 2011. New frontiers in oilseed biotechnology: meeting the global demand for vegetable oils for food, feed, biofuel and industrial applications. Current Opinion in Biotechnology. 22, pp. 252-259. https://doi.org/10.1016/j.copbio.2010.11.006

Willow

B - Book chapters etc edited externally
Hanley, S. J. 2011. Willow. in: Karp, A. and Halford, N. G. (ed.) Energy crops Royal Society of Chemistry (RSC), Cambridge. pp. 259-274

Overexpression of Arabidopsis ECERIFERUM1 promotes wax very-long-chain alkane biosynthesis and influences plant response to biotic and abiotic stresses

A - Papers appearing in refereed journals
Bourdenx, B., Bernard, A., Domergue, F., Pascal, S., Leger, A., Roby, D., Pervent, M., Vile, D., Haslam, R. P., Napier, J. A., Lessire, R. and Joubes, J. 2011. Overexpression of Arabidopsis ECERIFERUM1 promotes wax very-long-chain alkane biosynthesis and influences plant response to biotic and abiotic stresses. Plant Physiology. 156, pp. 29-45. https://doi.org/10.1104/pp.111.172320

13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation

A - Papers appearing in refereed journals
Beste, D. J. V., Bonde, B., Hawkins, N. D., Ward, J. L., Beale, M. H., Noack, S., Noh, K., Kruger, N. J., Ratcliffe, R. G. and Mcfadden, J. 2011. 13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation. PLOS Pathogens. 7, p. e1002091 (18pp). https://doi.org/10.1371/journal.ppat.1002091

Genetic mapping of rust resistance loci in biomass willow

A - Papers appearing in refereed journals
Hanley, S. J., Pei, M. H., Powers, S. J., Ruiz, C., Mallott, M. D., Barker, J. H. A. and Karp, A. 2011. Genetic mapping of rust resistance loci in biomass willow. Tree Genetics & Genomes. 7 (3), pp. 597-608. https://doi.org/10.1007/s11295-010-0359-x

Metabolic engineering of Saccharomyces cerevisiae for production of eicosapentaenoic acid, using a novel delta5-desaturase from Paramecium tetraurelia

A - Papers appearing in refereed journals
Tavares, S., Grotkjaer, T., Obsen, T., Haslam, R. P., Napier, J. A. and Gunnarsson, N. 2011. Metabolic engineering of Saccharomyces cerevisiae for production of eicosapentaenoic acid, using a novel delta5-desaturase from Paramecium tetraurelia. Applied and Environmental Microbiology. 77, pp. 1854-1861. https://doi.org/10.1128/AEM.01935-10

The identification and mapping of candidate genes and QTL involved in the fatty acid desaturation pathway in Brassica napus

A - Papers appearing in refereed journals
Smooker, A. M., Wells, R., Morgan, C., Beaudoin, F., Cho, K., Fraser, F. and Bancroft, I. 2011. The identification and mapping of candidate genes and QTL involved in the fatty acid desaturation pathway in Brassica napus. Theoretical and Applied Genetics. 122, pp. 1075-1090. https://doi.org/10.1007/s00122-010-1512-5

Identification and functional characterisation of genes encoding the omega-3 polyunsaturated fatty acid biosynthetic pathway from the coccolithophore Emiliania huxleyi

A - Papers appearing in refereed journals
Sayanova, O. V., Haslam, R. P., Venegas Caleron, M., Ruiz-Lopez, N., Worthy, C., Rooks, P., Allen, M. J. and Napier, J. A. 2011. Identification and functional characterisation of genes encoding the omega-3 polyunsaturated fatty acid biosynthetic pathway from the coccolithophore Emiliania huxleyi. Phytochemistry. 72, pp. 594-600. https://doi.org/10.1016/j.phytochem.2011.01.022

Foresight project on global food and farming futures: application of genetics and genomics to aquaculture development: current and future directions

A - Papers appearing in refereed journals
Mcandrew, B. and Napier, J. A. 2011. Foresight project on global food and farming futures: application of genetics and genomics to aquaculture development: current and future directions. The Journal of Agricultural Science. 149, pp. 143-151. https://doi.org/10.1017/S0021859610001152

Genetic improvement of willow for bioenergy and biofuels

A - Papers appearing in refereed journals
Karp, A., Hanley, S. J., Trybush, S. O., Macalpine, W. J., Pei, M. H. and Shield, I. F. 2011. Genetic improvement of willow for bioenergy and biofuels. Journal of Integrative Plant Biology. 53 (2), pp. 151-165. https://doi.org/10.1111/j.1744-7909.2010.01015.x

Metabolomics of Arabidopsis thaliana

B - Book chapters etc edited externally
Beale, M. H. and Sussman, M. R. 2011. Metabolomics of Arabidopsis thaliana. in: Hall, R. D. (ed.) Biology of plant metabolomics (Annual Plant Reviews Vol. 43) Wiley-Blackwell Chichester, Sussex. pp. 157-180

Characterization of a glutenin-specific serine proteinase of Sunn bug Eurygaster integricepts Put.

A - Papers appearing in refereed journals
Konarev, A. V., Beaudoin, F., Marsh, J., Vilkova, N. A., Nefedova, L. I., Sivri, D., Koksel, H., Shewry, P. R. and Lovegrove, A. 2011. Characterization of a glutenin-specific serine proteinase of Sunn bug Eurygaster integricepts Put. Journal of Agricultural and Food Chemistry - JAFC. 59, pp. 2462-2470. https://doi.org/10.1021/jf103867g

Editorial: Time to think

G - Articles in popular magazines and other technical publications
Theodoulou, F. L. 2011. Editorial: Time to think. Biochemist. 33(2), p. 3.

Editorial: The next hundred years

G - Articles in popular magazines and other technical publications
Theodoulou, F. L. 2011. Editorial: The next hundred years. Biochemist. 33(1), p. 3.

ELVOVL2 controls the level of n-6 28:5 and 30:5 fatty acids in testis, a prerequisite for male fertility and sperm maturation in mice

A - Papers appearing in refereed journals
Zadravec, D., Tvrdik, P., Guillou, H., Haslam, R. P., Kobayashi, T., Napier, J. A., Capecchi, M. R. and Jacobsson, A. 2011. ELVOVL2 controls the level of n-6 28:5 and 30:5 fatty acids in testis, a prerequisite for male fertility and sperm maturation in mice. Journal Of Lipid Research. 52 (2), pp. 245-255. https://doi.org/10.1194/jlr.M011346

Relationship between the contents of bioactive components in grain and the release dates of wheat lines in the HEALTHGRAIN diversity screen

A - Papers appearing in refereed journals
Shewry, P. R., Gebruers, K., Andersson, A. A. M., Aman, P., Piironen, V., Lampi, A-M., Boros, D., Rakszegi, M., Bedo, Z. and Ward, J. L. 2011. Relationship between the contents of bioactive components in grain and the release dates of wheat lines in the HEALTHGRAIN diversity screen. Journal of Agricultural and Food Chemistry - JAFC. 59, pp. 928-933. https://doi.org/10.1021/jf103860x

Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.)

A - Papers appearing in refereed journals
Quraishi, U. M., Murat, F., Abrouk, M., Pont, C., Confolent, C., Oury, F. X., Ward, J. L., Boros, D., Gebruers, K., Delcour, J. A., Courtin, C. M., Bedo, Z., Saulnier, L., Guillon, F., Balzergue, S., Shewry, P. R., Feuillet, C., Charmet, G. and Salse, J. 2011. Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.). Functional and Integrative Genomics. 11, pp. 71-83. https://doi.org/10.1007/s10142-010-0183-2

Temporal and spatial control of transgene expression using a heat-inducible promoter in transgenic wheat

A - Papers appearing in refereed journals
Freeman, J., Sparks, C. A., West, J., Shewry, P. R. and Jones, H. D. 2011. Temporal and spatial control of transgene expression using a heat-inducible promoter in transgenic wheat. Plant Biotechnology Journal. 9 (7), pp. 788-796. https://doi.org/10.1111/j.1467-7652.2011.00588.x

Challenges and opportunities for using wheat for biofuel production

B - Book chapters etc edited externally
Shewry, P. R., Freeman, J., Wilkinson, M. D., Pellny, T. K. and Mitchell, R. A. C. 2011. Challenges and opportunities for using wheat for biofuel production. in: Karp, A. and Halford, N. G. (ed.) Energy crops Royal Society of Chemistry (RSC), Cambridge. pp. 13-26

Peroxisomal transport systems: roles in signaling and metabolism

B - Book chapters etc edited externally
Theodoulou, F. L., Zhang, X., De Marcos Lousa, C., Nyathi, Y. and Baker, A. 2011. Peroxisomal transport systems: roles in signaling and metabolism. in: Geisler, M. and Venema, K. (ed.) Transporters and pumps in plant signaling Springer, Berlin. pp. 327-351

Q&A: Professor Maurice Moloney

G - Articles in popular magazines and other technical publications
Theodoulou, F. L. 2010. Q&A: Professor Maurice Moloney. The Biochemist. 32 (3), pp. 39-40. https://doi.org/10.1042/BIO03203039

New Elongase Gene And Production Of Delta-9-polyunsaturated Fatty Acids (Patent EP 1373519 B1)

H1 - Patents granted
Napier, J. A., Lazarus, C. M., Qi, B. and Lerchl, J. 2010. New Elongase Gene And Production Of Delta-9-polyunsaturated Fatty Acids (Patent EP 1373519 B1). EP 1373519 B1

Semiochemical (Patent US 7820153 B2)

H1 - Patents granted
Hick, A. J., Pickett, J. A., Wadhams, L. J. and Napier, J. A. 2010. Semiochemical (Patent US 7820153 B2) . US 7820153 B2

Semiochemical (Patent US 2010/0226877 A1)

H2 - Patents applied for
Hick, A. J., Pickett, J. A., Wadhams, L. J. and Napier, J. A. 2010. Semiochemical (Patent US 2010/0226877 A1) . US 2010/0226877 A1

Desaturases And Process For The Production Of Polyunsaturated Fatty Acids In Transgenic Organisms (Patent WO 2010/066703 A2)

H2 - Patents applied for
Napier, J. A. 2010. Desaturases And Process For The Production Of Polyunsaturated Fatty Acids In Transgenic Organisms (Patent WO 2010/066703 A2) . WO 2010/066703 A2

Desaturases And Process For The Production Of Polyunsaturated Fatty Acids In Transgenic Organisms (Patent CA 2744930 A1)

H2 - Patents applied for
Napier, J. A., Senger Toralf and Bauer Joerg 2010. Desaturases And Process For The Production Of Polyunsaturated Fatty Acids In Transgenic Organisms (Patent CA 2744930 A1) . CA 2744930 A1

Process For The Production Of Δ5-unsaturated Fatty Acids In Transgenic Organisms (Patent US 7723574 B2)

H1 - Patents granted
Zank, T., Napier, J. A. and Sayanova, O. V. 2010. Process For The Production Of Δ5-unsaturated Fatty Acids In Transgenic Organisms (Patent US 7723574 B2). US 7723574 B2

Process For The Production Of Arachidonic Acid And/or Eicosapentaenoic Acid (Patent US 2010/0043103 A1)

H2 - Patents applied for
Napier, J. A. and Sayanova, O. V. 2010. Process For The Production Of Arachidonic Acid And/or Eicosapentaenoic Acid (Patent US 2010/0043103 A1). US 2010/0043103 A1

Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses

C2 - Non-edited contributions to conferences
Hofinger, B. J., Bass, C., Baldwin, T., Jing, H-C., Beaudoin, F., Hammond-Kosack, K. E. and Kanyuka, K. 2010. Identification and characterization of novel natural alleles of eIF4E in barley providing broad-spectrum resistance to bymoviruses. Antoun, H., Trepanier, M., Prevost, D., Brisson, L. and Avis, T. (ed.) Biology of plant-microbe interactions, vol. 7 . International Society for Molecular Plant-Microbe Interactions, St. Paul. pp. Paper 71

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