An overview of functional genomic tools in deciphering insecticide resistance

A - Papers appearing in refereed journals

Homem, R. A. and Davies, T. G. E. 2018. An overview of functional genomic tools in deciphering insecticide resistance. Current Opinion in Insect Science. 27 (June), pp. 103-110. https://doi.org/10.1016/j.cois.2018.04.004

Publication dates
Authors	Homem, R. A. and Davies, T. G. E.
Abstract	In this short review, we highlight three functional genomic technologies that have recently been contributing to the understanding of the molecular mechanisms underpinning insecticide resistance: the GAL4/UAS system, a molecular tool used to express genes of interest in a spatiotemporal controlled manner; the RNAi system, which is used to knock-down gene expression; and the most recently developed gene editing tool,CRISPR/Cas9, which can be used to knock-out and knock-in sequences of interest.
Year of Publication	2018
Journal	Current Opinion in Insect Science
Journal citation	27 (June), pp. 103-110
Digital Object Identifier (DOI)	https://doi.org/10.1016/j.cois.2018.04.004
PubMed ID	30025625
PubMed Central ID	PMC6060081
Open access	Published as ‘gold’ (paid) open access
Funder	Biotechnology and Biological Sciences Research Council
Funder project or code	BBSRC Strategic Programme in Smart Crop Protection
Publisher's version	1-s2.0-S2214574517302183-main.pdf
Output status	Published
Online	13 Apr 2018
Publisher	Elsevier Science Bv
Copyright license	CC BY
ISSN	2214-5745

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Identification of ion channel genes in the Acyrthosiphon pisum genome

A - Papers appearing in refereed journals

Dale, R. P., Jones, A. K., Tamborindeguy, C., Davies, T. G. E., Amey, J. S., Williamson, S., Wolstenholme, A., Field, L. M., Williamson, M. S., Walsh, T. K. and Sattelle, D. B. 2010. Identification of ion channel genes in the Acyrthosiphon pisum genome. Insect Molecular Biology. 19(Suppl. 2), pp. 141-153. https://doi.org/10.1111/j.1365-2583.2009.00975.x

Interactions of pyrethroids with the voltage-gated sodium channel

G - Articles in popular magazines and other technical publications

Davies, T. G. E. and Williamson, M. S. 2009. Interactions of pyrethroids with the voltage-gated sodium channel. Bayer Crop Science Journal. 62, pp. 159-178.

Molecular identification and characterisation of the Myzus persicae voltage gated sodium channel gene

C1 - Edited contributions to conferences/learned societies

Amey, J., O'reilly, A., Williamson, M. S., Field, L. M., Wallace, B. A. and Davies, T. G. E. 2009. Molecular identification and characterisation of the Myzus persicae voltage gated sodium channel gene.

Single channel study of deltamethrin interactions with wild-type and mutated rat Nav1.2 sodium channels expressed in Xenopus oocytes

A - Papers appearing in refereed journals

Peng, F., Mellor, I. R., Williamson, M. S., Davies, T. G. E., Field, L. M. and Usherwood, P. N. R. 2009. Single channel study of deltamethrin interactions with wild-type and mutated rat Nav1.2 sodium channels expressed in Xenopus oocytes. Neurotoxicology. 30, pp. 358-367. https://doi.org/10.1016/j.neuro.2009.02.016

Knockdown resistance to DDT and pyrethroids: from target-site mutations to molecular modelling

A - Papers appearing in refereed journals

Davies, T. G. E., O'Reilly, A. O., Field, L. M., Wallace, B. A. and Williamson, M. S. 2008. Knockdown resistance to DDT and pyrethroids: from target-site mutations to molecular modelling. Pest Management Science. 64 (11), pp. 1126-1130. https://doi.org/10.1002/ps.1617

Mutations in DIIS5 and the DIIS4-S5 linker of Drosophila melanogaster sodium channel define binding domains for pyrethroids and DDT

A - Papers appearing in refereed journals

Usherwood, P. N. R., Davies, T. G. E., Mellor, I. R., O'Reilly, A. O., Peng, F., Vais, H., Khambay, B. P. S., Field, L. M. and Williamson, M. S. 2007. Mutations in DIIS5 and the DIIS4-S5 linker of Drosophila melanogaster sodium channel define binding domains for pyrethroids and DDT. FEBS Letters. 581 (28), pp. 5485-5492. https://doi.org/10.1016/j.febslet.2007.10.057

DDT, pyrethrins, pyrethroids and insect sodium channels

A - Papers appearing in refereed journals

Davies, T. G. E., Field, L. M., Usherwood, P. N. R. and Williamson, M. S. 2007. DDT, pyrethrins, pyrethroids and insect sodium channels. IUBMB Life. 59 (3), pp. 151-162. https://doi.org/10.1080/15216540701352042

A comparative study of voltage-gated sodium channels in the Insecta: implications for pyrethroid resistance in Anopheline and other Neopteran species

A - Papers appearing in refereed journals

Davies, T. G. E., Field, L. M., Usherwood, P. N. R. and Williamson, M. S. 2007. A comparative study of voltage-gated sodium channels in the Insecta: implications for pyrethroid resistance in Anopheline and other Neopteran species. Insect Molecular Biology. 16 (3), pp. 361-375. https://doi.org/10.1111/j.1365-2583.2007.00733.x

Modelling insecticide-binding sites in the voltage-gated sodium channel

A - Papers appearing in refereed journals

O'Reilly, A. O., Khambay, B. P. S., Williamson, M. S., Field, L. M., Wallace, B. A. and Davies, T. G. E. 2006. Modelling insecticide-binding sites in the voltage-gated sodium channel. Biochemical Journal. 396, pp. 255-263. https://doi.org/10.1042/BJ20051925

Sensitivity of the Drosophila para sodium channel to DDT is not lowered by the super-kdr mutation M918T on the IIS4-S5 linker that profoundly reduces sensitivity to permethrin and deltamethrin

A - Papers appearing in refereed journals

Usherwood, P. N. R., Vais, H., Khambay, B. P. S., Davies, T. G. E. and Williamson, M. S. 2005. Sensitivity of the Drosophila para sodium channel to DDT is not lowered by the super-kdr mutation M918T on the IIS4-S5 linker that profoundly reduces sensitivity to permethrin and deltamethrin. FEBS Letters. 579 (28), pp. 6317-6325. https://doi.org/10.1016/j.febslet.2005.09.096

Development of an insect cell line expression system for para sodium channels

C2 - Non-edited contributions to conferences

Davies, T. G. E. and Williamson, M. S. 2003. Development of an insect cell line expression system for para sodium channels. Abstracts Neurotox 2003: Neurotoxicological Targets from Functional Genomics and Proteomics, Nottingham, 1-4 September 2003 .

Restricted spatial expression of a high-affinity phosphate transporter in potato roots

A - Papers appearing in refereed journals

Gordon-Weeks, R., Tong, Y., Davies, T. G. E. and Leggewie, G. 2003. Restricted spatial expression of a high-affinity phosphate transporter in potato roots. Journal Of Cell Science. 116 (15), pp. 3135-3144. https://doi.org/10.1242/jcs.00615

Expression analysis of putative high-affinity phosphate transporters in Chinese winter wheats

A - Papers appearing in refereed journals

Davies, T. G. E., Ying, J., Xu, Q., Li, Z. S., Li, J. and Gordon-Weeks, R. 2002. Expression analysis of putative high-affinity phosphate transporters in Chinese winter wheats. Plant, Cell and Environment. 25 (10), pp. 1325-1339. https://doi.org/10.1046/j.1365-3040.2002.00913.x

Triticum aestivum partial mRNA for putative inorganic phosphate transporter (pt8 gene)

K - Protein or DNA sequences submitted to database

Davies, T. G. E. 2001. Triticum aestivum partial mRNA for putative inorganic phosphate transporter (pt8 gene).

Triticum aestivum partial mRNA for inorganic phosphate transporter (pt7 gene)

K - Protein or DNA sequences submitted to database

Davies, T. G. E. 2001. Triticum aestivum partial mRNA for inorganic phosphate transporter (pt7 gene).

Triticum aestivum partial mRNA for inorganic phosphate transporter (pt6 gene)

K - Protein or DNA sequences submitted to database

Davies, T. G. E. 2001. Triticum aestivum partial mRNA for inorganic phosphate transporter (pt6 gene).

Unlocking soil phosphorus with the help of P efficient wheat varieties from China

G - Articles in popular magazines and other technical publications

Gordon-Weeks, R., Davies, T. G. E. and Barraclough, P. B. 2001. Unlocking soil phosphorus with the help of P efficient wheat varieties from China. BBSRC Business. January 2001, pp. 20-21.

Localisation of high affinity phosphate transporters

C2 - Non-edited contributions to conferences

Gordon-Weeks, R., Davies, T. G. E., Xu, Q., Ying, J. and Li, Z-S. 2001. Localisation of high affinity phosphate transporters. Proceedings 12th International Workshop on Plant Membrane Biology, Madison, 11-16 August 2001 . pp. 216

Triticum aestivum partial mRNA for putative inorganic phosphate transporter, (pt5 gene), clone 2

K - Protein or DNA sequences submitted to database

Davies, T. G. E. 2001. Triticum aestivum partial mRNA for putative inorganic phosphate transporter, (pt5 gene), clone 2.

The Arabidopsis thaliana ABC protein superfamily: a complete inventory

C2 - Non-edited contributions to conferences

Sanchez-Fernandez, R., Davies, T. G. E., Coleman, J. O. D. and Rea, P. A. 2001. The Arabidopsis thaliana ABC protein superfamily: a complete inventory. Abstracts 12th International Workshop on Plant Membrane Biology, Madison, 11-16 August 2001 . pp. 77

The Arabidopsis thaliana ABC protein superfamily: a complete inventory

A - Papers appearing in refereed journals

Sanchez-Fernandez, R., Davies, T. G. E., Coleman, J. O. D. and Rea, P. A. 2001. The Arabidopsis thaliana ABC protein superfamily: a complete inventory. Journal of Biological Chemistry. 276 (32), pp. 30231-30244. https://doi.org/10.1074/jbc.M103104200

Complete inventory of Arabidopsis ABC proteins

C2 - Non-edited contributions to conferences

Sanchez-Fernandez, R., Davies, T. G. E., Coleman, J. O. D. and Rea, P. A. 2001. Complete inventory of Arabidopsis ABC proteins. 3rd FEBS Advanced Lecture Course on ATP-Binding Cassette (ABC) Proteins: from Multidrug Resistance to Genetic Disease, Gosau, Austria, 3-10 March 2001 .

Do plants have more genes than humans? Yes when it comes to ABC proteins

A - Papers appearing in refereed journals

Sanchez-Fernandez, R., Rea, P. A., Davies, T. G. E. and Coleman, J. O. D. 2001. Do plants have more genes than humans? Yes when it comes to ABC proteins. Trends in Plant Science. 6 (8), pp. 347-348. https://doi.org/10.1016/S1360-1385(01)02038-6

ArabidopsisABC.Net (Web site at http://www.arabidopsisabc.net)

G - Articles in popular magazines and other technical publications

Sanchez-Fernandez, R., Rea, P. A., Davies, T. G. E. and Coleman, J. O. D. 2001. ArabidopsisABC.Net (Web site at http://www.arabidopsisabc.net).

Do plants have more genes than humans? Yes when it comes to ABC proteins (Online preview of paper to be published in Trends in Plant Science )

G - Articles in popular magazines and other technical publications

Sanchez-Fernandez, R., Rea, P. A., Davies, T. G. E. and Coleman, J. O. D. 2001. Do plants have more genes than humans? Yes when it comes to ABC proteins (Online preview of paper to be published in Trends in Plant Science ). HMS Beagle. 106.

Physcomitrella patens partial vp1 gene for vacuolar pyrophosphatase, exons 1-3

K - Protein or DNA sequences submitted to database

Davies, T. G. E. 2001. Physcomitrella patens partial vp1 gene for vacuolar pyrophosphatase, exons 1-3.

Physcomitrella patens partial mRNA for vacuolar pyrophosphatase (vp1 gene)

K - Protein or DNA sequences submitted to database

Davies, T. G. E. 2001. Physcomitrella patens partial mRNA for vacuolar pyrophosphatase (vp1 gene).

The Arabidopsis thaliana ATP-binding cassette proteins: an emerging superfamily

A - Papers appearing in refereed journals

Davies, T. G. E. and Coleman, J. O. D. 2000. The Arabidopsis thaliana ATP-binding cassette proteins: an emerging superfamily. Plant, Cell and Environment. 23 (5), pp. 431-443. https://doi.org/10.1046/j.1365-3040.2000.00577.x

ATP-binding cassette proteins of Arabidopsis thaliana

C2 - Non-edited contributions to conferences

Davies, T. G. E. and Coleman, J. O. D. 2000. ATP-binding cassette proteins of Arabidopsis thaliana. Abstracts Society for Experimental Biology Plant Transport Group Meeting, Hatfield, 6-9 September 2000 .

Isolation of an Arabidopsis AtPT2 transposon insertion mutant from the John Innes SLAT collection

C2 - Non-edited contributions to conferences

Davies, T. G. E. and Gordon-Weeks, R. 2000. Isolation of an Arabidopsis AtPT2 transposon insertion mutant from the John Innes SLAT collection. Abstracts Society for Experimental Biology Plant Transport Group Meeting, Hatfield, 6-9 September 2000 .

Characterisation of high-affinity phosphate transporter homologues from phosphate-efficient Chinese wheat varieties

C2 - Non-edited contributions to conferences

Davies, T. G. E., Xu, Q., Li, Z. and Gordon-Weeks, R. 2000. Characterisation of high-affinity phosphate transporter homologues from phosphate-efficient Chinese wheat varieties. Abstracts Society for Experimental Biology Plant Transport Group Meeting, Hatfield, 6-9 September 2000 .

ATP-binding cassette proteins of Arabidopsis thaliana

C2 - Non-edited contributions to conferences

Davies, T. G. E. and Coleman, J. O. D. 2000. ATP-binding cassette proteins of Arabidopsis thaliana. Abstracts COST Action 837 Workshop on Phytoremediation 2000 - State of the Art in Europe - an Intercontinental Comparison, Athens, 6-8 April 2000 . pp. 148

Biochemical characterisation of plant plasma membrane phosphate transporters

C2 - Non-edited contributions to conferences

Gordon-Weeks, R., Leggewie, G. and Davies, T. G. E. 1999. Biochemical characterisation of plant plasma membrane phosphate transporters. InAbstracts Society for Experimental Biology Plant Transport Group Meeting, Southampton, 8-10 September 1999 .

Structural aspects of the effectiveness of bisphosphonates as competitive inhibitors of the plant vacuolar proton-pumping pyrophosphatase

A - Papers appearing in refereed journals

Gordon-Weeks, R., Parmar, S., Davies, T. G. E. and Leigh, R. A. 1999. Structural aspects of the effectiveness of bisphosphonates as competitive inhibitors of the plant vacuolar proton-pumping pyrophosphatase. Biochemical Journal. 337, pp. 373-377.

Are P-glycoproteins in plants chloride channel regulators?

C2 - Non-edited contributions to conferences

Davies, T. G. E. 1998. Are P-glycoproteins in plants chloride channel regulators? Abstracts 9th Colloque Canaux Ioniques, La Londe les Maures, 1998 . pp. P42

Molecular approaches towards elucidation of the function of the vacuolar H+-pumping inorganic pyrophosphatase in plants

C2 - Non-edited contributions to conferences

Davies, T. G. E., Gordon-Weeks, R., Zrenner, R., Stitt, M., Knight, C. D., Wang, T. L. and Leigh, R. A. 1998. Molecular approaches towards elucidation of the function of the vacuolar H+-pumping inorganic pyrophosphatase in plants. Abstracts 11th International Workshop on Plant Membrane Biology, Cambridge, 9-14 August 1998 .

HvMDR 2 - a novel P-glycoprotein homologue from barley

C2 - Non-edited contributions to conferences

Theodoulou, F. L., Davies, T. G. E., Hallahan, D. L. and Forde, B. G. 1998. HvMDR 2 - a novel P-glycoprotein homologue from barley. Abstracts 11th International Workshop on Plant Membrane Biology, Cambridge, 9-14 August 1998 . pp. 78

Pyrophosphate analogues differ in their effectiveness as competitive inhibitors of the plant vacuolar proton-pumping pyrophosphatase.

C2 - Non-edited contributions to conferences

Gordon-Weeks, R., Davies, T. G. E., Parmar, S. and Leigh, R. A. 1998. Pyrophosphate analogues differ in their effectiveness as competitive inhibitors of the plant vacuolar proton-pumping pyrophosphatase. Abstracts 11th International Workshop on Plant Membrane Biology, Cambridge, 9-14 August 1998 . pp. 56

Structure and function of the plant vacuolar H+-pumping inorganic pyrophosphatase

C2 - Non-edited contributions to conferences

Gordon-Weeks, R., Davies, T. G. E., Parmar, S. and Leigh, R. A. 1997. Structure and function of the plant vacuolar H+-pumping inorganic pyrophosphatase. Ecophysiology of Plants: Molecules, Membranes and Mechanisms. Abstracts 2nd International Symposium of the Sonderforschungsbereich 199, Edernburg, Germany, 30 October-2 November 1997 . pp. 30-31

Characterization of a novel P-glycoprotein homologue from barley - an ABC-type transporter with no assigned function in plants

C2 - Non-edited contributions to conferences

Davies, T. G. E. and Forde, B. G. 1997. Characterization of a novel P-glycoprotein homologue from barley - an ABC-type transporter with no assigned function in plants. Abstracts SEB Plant Transport Group Workshop, Glasgow, 8-10 September 1997 . pp. T10

Pyrophosphate analogues differ in their effectiveness as competitive inhibitors of the plant vacuolar proton-pumping pyrophosphatase: a structural explanation

C2 - Non-edited contributions to conferences

Davies, T. G. E., Parmar, S., Gordon-Weeks, R. and Leigh, R. A. 1997. Pyrophosphate analogues differ in their effectiveness as competitive inhibitors of the plant vacuolar proton-pumping pyrophosphatase: a structural explanation. Abstracts SEB Plant Transport Group Workshop, Glasgow, 8-10 September 1997 . pp. T7

Cloning and characterisation of a novel P-glycoprotein homologue from barley

A - Papers appearing in refereed journals

Davies, T. G. E., Theodoulou, F. L., Hallahan, D. L. and Forde, B. G. 1997. Cloning and characterisation of a novel P-glycoprotein homologue from barley. Gene. 199, pp. 195-202.

Detoxification of xenobiotics by plants: chemical modification and vacuolar compartmentation

A - Papers appearing in refereed journals

Coleman, J. O. D., Blake-Kalff, M. M. A. and Davies, T. G. E. 1997. Detoxification of xenobiotics by plants: chemical modification and vacuolar compartmentation. Trends in Plant Science. 2 (4), pp. 144-151. https://doi.org/10.1046/j.1365-3040.1997.d01-93.x

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