Sustainable Soils and Crops

TitleSustainable Soils and Crops
TypeScience Department
InstituteRothamsted Research
HeadMartin Broadley
Executive AssistantSally Murdoch
Natalia Deas

Outputs

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Evaluation of pedotransfer functions to estimate some of soil hydraulic characteristics in North Africa A case study from Morocco

A - Papers appearing in refereed journals
Beniaich, A., Otten, W., Shin, H.-C., Cooper, H., Rickson, J., Soulaimani, A. and El Gharous, M. 2023. Evaluation of pedotransfer functions to estimate some of soil hydraulic characteristics in North Africa A case study from Morocco. Frontiers in Environmental Science. 11, p. 1090688. https://doi.org/10.3389/fenvs.2023.1090688

Genetic and Agronomic Control of Free Asparagine Accumulation in Wheat (Triticum aestivum)

F - Theses
Oddy, J. 2023. Genetic and Agronomic Control of Free Asparagine Accumulation in Wheat (Triticum aestivum). F - Theses Rothamsted Research Sustainable Soils and Crops

Necrotrophic fungal infection affects indolic glucosinolate metabolism in Brassica rapa

A - Papers appearing in refereed journals
Aghajanzadeh, T. A., Watanabe, M., Tohge, T., Hawkesford, M. J., Fernie, A. R., Hoefgen, R., Elzenga, J. T. M. and De Kok, L. J. 2023. Necrotrophic fungal infection affects indolic glucosinolate metabolism in Brassica rapa. Acta physiologiae plantarum. 45 (5), p. 64. https://doi.org/10.1007/s11738-023-03546-3

Changes in soil surface properties under simulated rainfall and the effect of surface roughness on runoff, infiltration and soil loss

A - Papers appearing in refereed journals
Bahddou, S., Otten, W., Whalley, W. R., Shin, H., El Gharous, M. and Rickson, R. J. 2023. Changes in soil surface properties under simulated rainfall and the effect of surface roughness on runoff, infiltration and soil loss. Geoderma. 431, p. 116341. https://doi.org/10.1016/j.geoderma.2023.116341

A high soluble-fibre allele in wheat encodes a defective cell wall peroxidase responsible for dimerization of ferulate moieties on arabinoxylan

A - Papers appearing in refereed journals
Mitchell, R. A. C., Oszvald, M., Pellny, T. K., Freeman, J., Halsey, K., Sparks, C. A., Huttly, A. K., Specel, S., Leverington-Waite, M., Griffiths, S., Shewry, P. R. and Lovegrove, A. 2023. A high soluble-fibre allele in wheat encodes a defective cell wall peroxidase responsible for dimerization of ferulate moieties on arabinoxylan. bioRxiv. https://doi.org/10.1101/2023.03.08.531735

Comparative Compositions of Grain of Bread Wheat, Emmer and Spelt Grown with Different Levels of Nitrogen Fertilisation

A - Papers appearing in refereed journals
Lovegrove, A., Dunn, J., Pellny, T. K., Hood, J., Burridge, A. J., America, A. H. P., Gilissen, L., Timmer, R., Proos-Huijsmans, Z. A. M/, Van Straaten, J. P., Jonkers, D., Ward, J. L., Brouns, F. and Shewry, P. R. 2023. Comparative Compositions of Grain of Bread Wheat, Emmer and Spelt Grown with Different Levels of Nitrogen Fertilisation. Foods. 12 (4), p. 843. https://doi.org/10.3390/foods12040843

Modification of plant cell walls with hydroxycinnamic acids by BAHD acyltransferases

A - Papers appearing in refereed journals
Chandrakanth, N. N., Zhang, C. C., Freeman, J., de Souza, W. R., Bartley, L. E. and Mitchell, R. A. C. 2023. Modification of plant cell walls with hydroxycinnamic acids by BAHD acyltransferases. Frontiers in Plant Science. 13, p. 1088879. https://doi.org/10.3389/fpls.2022.1088879

Climate change challenges, plant science solutions

A - Papers appearing in refereed journals
Eckardt, N., Ainsworth, E., Bahuguna, R., Broadley, M., Busch, W., Carpita, N., Castrillo, G., Chory, J., DeHaan, L., Duarte, C., Henry, A., Krishna Jagadish, S., Langdale, J., Leakey, A., Liao, J., Lu, K., McCann, M., McKay, J., Odeny, D., De Oliveira, E., Platten, J., Rabbi, I., Rim, E. Y., Ronald, P., Salt, D., Shigenaga, A., Wang. E., Wolfe, M. and Zhang, X. 2023. Climate change challenges, plant science solutions. The Plant Cell. 35 (1), pp. 24 - 66. https://doi.org/10.1093/plcell/koac303

Nutritional and tissue-specific regulation of cytochrome P450 CYP711A MAX1 homologues and strigolactone biosynthesis in wheat

A - Papers appearing in refereed journals
Sigalas, P., Buchner, P. H., Thomas, S. G., Jamois, F., Arkourn, M., Yvin, J.- C., Bennett, M. J. and Hawkesford, M. J. 2023. Nutritional and tissue-specific regulation of cytochrome P450 CYP711A MAX1 homologues and strigolactone biosynthesis in wheat. Journal of Experimental Botany. 74 (6), pp. 1890-1910. https://doi.org/10.1093/jxb/erad008

Effect of different organic amendments on actual and achievable yields in a cereal-based cropping system

A - Papers appearing in refereed journals
Albano, X., Whitmore, A. P., Sakrabani, O., Thomas, C. L., Sizmur, T., Ritz, K., Harris, J., Pawlett, M., Watts, C. W. and Haefele, S. M. 2023. Effect of different organic amendments on actual and achievable yields in a cereal-based cropping system. Journal of Soil Science and Plant Nutrition. 23, pp. 2122-2137. https://doi.org/10.1007/s42729-023-01167-w

Regional differences in nitrogen balance and nitrogen use efficiency in the rice–livestock system of Uruguay

A - Papers appearing in refereed journals
Castillo, J., Kirk, G. J. D., Rivero, M. J. and Haefele, S. M. 2023. Regional differences in nitrogen balance and nitrogen use efficiency in the rice–livestock system of Uruguay. Frontiers in Sustainable Food Systems. 7, p. 1104229. https://doi.org/10.3389/fsufs.2023.1104229

Towards stability of food production and farm income in a variable climate

A - Papers appearing in refereed journals
Harkness, C., Areal, F. J., Semenov, M. A., Senapati, N., Shield, I. F. and Bishop, J. 2023. Towards stability of food production and farm income in a variable climate. Ecological Economics. 204 (Part A), p. 107676. https://doi.org/10.1016/j.ecolecon.2022.107676

Comments on the exact solutions of Mathieu's equation by D. J. Daniel (2020)

A - Papers appearing in refereed journals
Shin, H. 2023. Comments on the exact solutions of Mathieu's equation by D. J. Daniel (2020). Progress of Theoretical and Experimental Physics . 1, p. 018101. https://doi.org/10.1093/ptep/ptac155

Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial.

A - Papers appearing in refereed journals
Raffan, S., Oddy, J., Mead, A., Barker, G., Curtis, T. Y., Usher, S. L., Burt, C. and Halford, N. G. 2023. Field assessment of genome edited, low asparagine wheat: Europe's first CRISPR wheat field trial. Plant Biotechnology Journal. 21 (6), pp. 1097-1099. https://doi.org/10.1111/pbi.14026

Challenging claimed benefits of soil carbon sequestration for mitigating climate change and increasing crop yields: heresy or sober realism?

A - Papers appearing in refereed journals
Powlson, D. S. and Galdos, M. V. 2023. Challenging claimed benefits of soil carbon sequestration for mitigating climate change and increasing crop yields: heresy or sober realism? Global Change Biology. 29 (9), pp. 2381-2383. https://doi.org/10.1111/gcb.16640

The uptake of selenium by perennial ryegrass in soils of different organic matter contents receiving sheep excreta

A - Papers appearing in refereed journals
Kao, P-T., Buss, H. L., McGrath, S. P., Darch, T., Warren, H. E. and Lee, M. R. F. 2023. The uptake of selenium by perennial ryegrass in soils of different organic matter contents receiving sheep excreta. Plant and Soil. 486, pp. 639-659. https://doi.org/10.1007/s11104-023-05898-8

Functions of macronutrients

B - Book chapters etc edited externally
Hawkesford, M. J., Cakmak, I., Coskun, D., De Kok, L. J., Lambers, H., Schjoerring, J. K. and White, P. J. 2023. Functions of macronutrients. in: Rengel, Z., Cakmak, I. and White, P. J. (ed.) Marschner's Mineral Nutrition of Plants 4th edition London Elsevier. pp. 201-281

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

A - Papers appearing in refereed journals
Terlouw, B. R., Blin, K., Navarro-Munoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Meijer, D., Recchia, M. J. J., Reitz, Z. L., Santen, J. A. V., Selem-Mojica, N., Torring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A. A., Augustijn, H. E., Avelar-Rivas, J. A., Avitia-Domınguez, L. A., Barona-Gomez, F., Bernaldo-Aguero, J., Bielinski, V. A., Biermann, F., Booth, T. J., Bravo, V. J. C., Castelo-Branco, R., Chagas, F. O., Cruz-Morales, P., Du, C., Duncan, K. R., Gavriilidou, A., Gayrard, D., Gutierrez-Garcıa, K., Haslinger, K., Helfrich, E. J. N., Hooft, J. J. V. D., Jati, A. P., Kalkreuter, E., Kalyvas, N., Kang, K. B., Kautsar, S., Kim, W., Kunjapur, A. M., Lee, W-S., Li, Y., Lin, G., Loureiro, C., Louwen, J. J. R., Louwen, N. L., Lund, G., Parra, J., Philmus, B., Pourmohsenin, B., Pronk, L. J. U., Rego, A., Rex, D. A. B., Robinson, S., Rosas-Becerra, L. R., Roxborough, E. T., Schorn, M. A., Scobie, D. J., Sing, K. S., Sokolova, N., Tang, X., Udwary, D., Vigneshwari, A., Vind, K., Vromans, S. P. J. M., Waschulin, V., Williams, S. E., Winter, J. M., Witte, T. E., Yang, H. X. D., Yu, J., Zdouc, M., Zhong, Z., Collemare, J., Linington, R. G., Weber, T. and Medema, M. H. 2023. MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters. Nucleic Acids Research. 51 (D1), pp. D606-D610. https://doi.org/10.1093/nar/gkac1049

Genetic enhancement of Trichoderma asperellum biocontrol potentials and carbendazim tolerance for chickpea dry root rot disease management

A - Papers appearing in refereed journals
Ramangouda, G., Naik, M. K., Nitnavare, R., Yeshvekar, R., Bhattacharya, J., Bhatnagar-Mathur, P. and Sharma, M. 2023. Genetic enhancement of Trichoderma asperellum biocontrol potentials and carbendazim tolerance for chickpea dry root rot disease management. PLOS ONE. 18 (1), p. e0280064. https://doi.org/10.1371/journal.pone.0280064

Movement of micro- and macronutrients from sheep excreta to grass and leachate via soil

N - Datasets
Kao, P-T., Darch, T., Warren, H., McGrath, S. P., Buss, H.L. and Lee, M. R. F. 2023. Movement of micro- and macronutrients from sheep excreta to grass and leachate via soil. Rothamsted Research. https://doi.org/10.23637/rothamsted.98v24

Genetic diversity and population structure analysis of barley landraces from Shanghai region using genotyping-by-sequencing

A - Papers appearing in refereed journals
Li, L., Halford, N. G., Wang, H., Zong, Y., Guo, Z., Lu, R., Liu, C. and Chen, Z. 2023. Genetic diversity and population structure analysis of barley landraces from Shanghai region using genotyping-by-sequencing. Phyton. 92 (4), pp. 1275-1287. https://doi.org/10.32604/phyton.2023.026946

Accounting for environmental variation in the free asparagine content of wheat grain

A - Papers appearing in refereed journals
Oddy, J., Elmore, S. and Halford, N. G. 2023. Accounting for environmental variation in the free asparagine content of wheat grain. Journal of Food Composition and Analysis - JFCA. 120, p. 105333. https://doi.org/10.1016/j.jfca.2023.105333

A chromatographic and immunoprofiling approach to optimising workflows for extraction of gluten proteins from flour

A - Papers appearing in refereed journals
Daly, M., Huang, X., Nitride, C., Tranquet, O., Rogers, A., Shewry, P. R., Gethings, L. A. and Mills, E. N. C. 2023. A chromatographic and immunoprofiling approach to optimising workflows for extraction of gluten proteins from flour. Journal Of Chromatography B. 1215, p. 123554. https://doi.org/10.1016/j.jchromb.2022.123554

Reducing dietary acrylamide exposure from wheat products through crop management and imaging

A - Papers appearing in refereed journals
Oddy, J., Addy, J., Mead, A., Hall, C., Mackay, C., Ashfield, T., Mcdiarmid, F., Curtis, T. Y., Raffan, S., Wilkinson, M. D., Elmore, J. S., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Reducing dietary acrylamide exposure from wheat products through crop management and imaging. Journal of Agricultural and Food Chemistry - JAFC. 71 (7), pp. 3403-3413. https://doi.org/10.1021/acs.jafc.2c07208

Genetic control of grain amino acid composition in a UK soft wheat mapping population

A - Papers appearing in refereed journals
Oddy, J., Chhetry, M., Awal, R., Addy, J., Wilkinson, M. D., Smith, D., King, R., Hall, C., Testa, R., Murray, E., Raffan, S., Curtis, T. Y., Wingen, L., Griffiths, S., Berry, S., Elmore, S. J., Cryer, N., Moreira de Almeida, I. and Halford, N. G. 2023. Genetic control of grain amino acid composition in a UK soft wheat mapping population. The Plant Genome. 16 (4), p. e20335. https://doi.org/10.1002/tpg2.20335

Meiotic chromosome organization and its role in recombination and cancer

A - Papers appearing in refereed journals
Morgan, C., Nayak, A., Hosoya, N., Smith, G. R. and Lambing, C. 2023. Meiotic chromosome organization and its role in recombination and cancer. Current topics in developmental biology. 151 (chpt 5), pp. 91-126. https://doi.org/10.1016/bs.ctdb.2022.04.008

Response of three cereal crops in continuous arable or ley-arable rotations to fertiliser nitrogen and soil nitrogen at Rothamsted's Woburn Ley-arable experiment

A - Papers appearing in refereed journals
Poulton, P. R., Johnston, A. E. and White, R. P. 2023. Response of three cereal crops in continuous arable or ley-arable rotations to fertiliser nitrogen and soil nitrogen at Rothamsted's Woburn Ley-arable experiment. Soil Use and Management. 39 (2), pp. 771-784. https://doi.org/10.1111/sum.12872

Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype

A - Papers appearing in refereed journals
Neal, A. L., Barrat, H., Bacq-Lebreuil, A., Qin, Y., Zhang, X., Takahashi, T., Rubio, V., Hughes, D. J., Clark, I. M., Cardenas, L. M., Gardiner, L., Krishna, R., Glendining, M. J., Ritz, K., Mooney, S. and Crawford, J. W. 2023. Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype. Nature Food. 4, pp. 51-60. https://doi.org/10.1038/s43016-022-00671-z

A loss function to evaluate agricultural decision‑making under uncertainty: a case study of soil spectroscopy

A - Papers appearing in refereed journals
Breure, T., Haefele, S. M., Hannam, J. A., Corstanje, R., Webster, R., Moreno-Rojas, S. and Milne, A. E. 2022. A loss function to evaluate agricultural decision‑making under uncertainty: a case study of soil spectroscopy. Precision Agriculture. 23, pp. 1333 - 1353. https://doi.org/10.1007/s11119-022-09887-2

Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean

A - Papers appearing in refereed journals
Li, D., Bai, D., Tian, Y., Li, Y.‐H., Zhao, C., Wang, Q., Guo, S., Luan, X., Wang, R., Yang, J., Hawkesford, M. J., Schnable, J. C., Jin, X. and Qiu, L. 2022. Time series canopy phenotyping enables the identification of genetic variants controlling dynamic phenotypes in soybean. Journal of Integrative Plant Biology. https://doi.org/10.1111/jipb.13380

Anemia in children aged 6-59 months was significantly associated with maternal anemia status in rural Zimbabwe.

A - Papers appearing in refereed journals
Mutonhodza, B., Dembedza, M. P., Lark, R. M., Joy, E. J. M., Manzeke-Kangara, M. G., Njovo, H., Nyadzayo, T. K., Kalimbira, A. A., Bailey, E. H., Broadley, M., Matsungo, T. M. and Chopera, P. 2022. Anemia in children aged 6-59 months was significantly associated with maternal anemia status in rural Zimbabwe. Food Science and Nutrition. https://doi.org/10.1002/fsn3.3157

Evidence for increasing global wheat yield potential

A - Papers appearing in refereed journals
Guarin, J. R., Martre, P., Ewert, F., Webber, H., Dueri, S., Calderini, D., Reynolds, M., Molero, G., Miralles, D., Garcia, G., Slafer, G., Giunta, F., Pequeno, D. N. L., Stella, T., Ahmed, M., Alderman, P. D., Basso, B., Berger, A. G., Bindi, M., Bracho-Mujica, G., Cammarano, D., Chen, Y., Dumont, B., Rezae, E. E., Fereres, E., Ferrise, R., Gaiser, T., Gao, Y., Garcia-Vila, M., Gayler, S., Hochman, Z., Hoogenboom, G., Hunt, L. A., Kersebaum, K. C., Nendel, C., Olesen, J. E., Palosuo, T., Priesack, E., Pullens, J. W. M., Rodríguez, A., Rötter, R. P., Ruiz Ramos, M., Semenov, M. A., Senapati, N., Siebert, S., Srivastava, A. K., Stöckle, C., Supit, I., Tao, F., Thorburn, P., Wang, E., Weber, T. K. D., Xiao, L., Zhang, Z., Zhao, C., Zhao, J., Zhao, Z., Zhu, Y. and Asseng, S. 2022. Evidence for increasing global wheat yield potential. Environmental Research Letters. 17, p. 124045. https://doi.org/10.1088/1748-9326/aca77c

A stealth health approach to dietary fibre

A - Papers appearing in refereed journals
Baenziger, P. S., Frels, K., Greenspan, S., Jones, J., Lovegrove, A., Rose, D., Shewry, P. R. and Wallace, R. 2022. A stealth health approach to dietary fibre. Nature Food. https://doi.org/10.1038/s43016-022-00674-w

Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies

A - Papers appearing in refereed journals
Alegria-Terrazas, R., Robertson-Albertyn, S., Corral, A. M., Escudero-Martinez, C., Kapadia, R., Balbirnie-Cumming, K., Morris, J., Hedley, P. E., Barret, M., Torres-Cortes, G., Paterson, E., Baggs, E. M., Abbott, J. and Bulgarelli, D. 2022. Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies. mSystems. https://doi.org/10.1128/msystems.00934-22

Pollution and risks of trace elements in the soil environment

B - Book chapters etc edited externally
Wang, P., Zhao, F-J. and McGrath, S. P. 2022. Pollution and risks of trace elements in the soil environment. in: Reference Module in Earth Systems and Environmental Sciences Elsevier.

Conservation tillage and residue management improve soil health and crop productivity—Evidence from a rice-maize cropping system in Bangladesh

A - Papers appearing in refereed journals
Sarker, M. R., Galdos, M. V., Challinor, A. J., Huda, M. S., Chaki, A. K. and Hossain, A. 2022. Conservation tillage and residue management improve soil health and crop productivity—Evidence from a rice-maize cropping system in Bangladesh. Frontiers in Environmental Science. 10, p. 969819. https://doi.org/10.3389/fenvs.2022.969819

Improving crop yield potential Underlying biological processes and future prospects

A - Papers appearing in refereed journals
Burgess, A. J., Masclaux-Daubresse, C., Strittmatter, G., Weber, A. P. M., Taylor, S. H., Harbinson, J., Yin, X., Freeman, S. E., Paul, M. J., Westhoff, P., Loreto, F., Ceriotti, A., Saltenis, V. L. R., Pribil, M., Nacry, P., Scharff, L. B., Jensen, P. E., Muller, B., Cohan, J., Foulkes, J., Rogowsky, P., Debaeke, P., Meyer, C., Nelissen, H., Inze, D., Lankhorst, R. K., Parry, M. A. J., Murchie, E. H. and Baekelandt, A. 2022. Improving crop yield potential Underlying biological processes and future prospects. Food and Energy Security. p. e435. https://doi.org/10.1002/fes3.435

Improving the shear design of steel-bar reinforced ultra high performance fibre reinforced concrete beams using mesoscale modelling

A - Papers appearing in refereed journals
Zhang, Y, Yang, Z, Zhang, H., Tsang, N. and Zhang, X. 2022. Improving the shear design of steel-bar reinforced ultra high performance fibre reinforced concrete beams using mesoscale modelling. Advances in structural engineering. 24 (4). https://doi.org/10.1177/13694332221137174

Conservation tillage and residue management improve soil health and crop productivity-Evidence from a rice-maize cropping system in Bangladesh.

A - Papers appearing in refereed journals
Sarker, M. R., Galdos, M., Challinor, A. J., Huda, M. . S., Chaki, A. K. and Hossain, A. 2022. Conservation tillage and residue management improve soil health and crop productivity-Evidence from a rice-maize cropping system in Bangladesh. Frontiers in Environmental Science. 10, p. .969819. https://doi.org/10.3389/fenvs.2022.969819

A hydro-mechanical-damage fully coupled cohesive phase field model for complicated fracking simulations in poroelastic media

A - Papers appearing in refereed journals
Lia, H., Lei, H., Yang, Z., Wu, J., Zhang, X. and Li, S. 2022. A hydro-mechanical-damage fully coupled cohesive phase field model for complicated fracking simulations in poroelastic media. Computer Methods in Applied Mechanics and Engineering. 399, p. 115451. https://doi.org/10.1016/j.cma.2022.115451

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