Rothamsted Research

TitleRothamsted Research
TypeInstitute

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Defining the wheat microbiome: towards microbiome-facilitated crop production

A - Papers appearing in refereed journals
Kavamura, V. N., Mendes, R., Bargaz, A. and Mauchline, T. H. 2021. Defining the wheat microbiome: towards microbiome-facilitated crop production. Computational and structural biotechnology journal. 19, pp. 1200-1213. https://doi.org/10.1016/j.csbj.2021.01.045

N-terminal truncated RHT-1 proteins generated by translational reinitiation cause semi-dwarfing of wheat Green Revolution alleles

A - Papers appearing in refereed journals
Thomas, S. G., Van De Velde, K., Heyse, F., Kaspar, R., Van Der Straeten, D. and Rohde, A. 2021. N-terminal truncated RHT-1 proteins generated by translational reinitiation cause semi-dwarfing of wheat Green Revolution alleles. Molecular Plant. 14 (1), pp. 1-9. https://doi.org/10.1016/j.molp.2021.01.002

Population responses to observed climate variability across multiple organismal groups

A - Papers appearing in refereed journals
Le Coeur, C., Storkey, J. and Satu, R. 2021. Population responses to observed climate variability across multiple organismal groups. Oikos. 130 (3), pp. 476-487. https://doi.org/10.1111/oik.07371

Poor competitiveness of Bradyrhizobium in pigeon pea root colonization in Indian soils

A - Papers appearing in refereed journals
Chalasani, D., Basu, A., Pullabhotla, S. V. S . R. N., Jorrin, B., Neal, A. L., Poole, P. S., Podile, A. R. and Tkacz, A. 2021. Poor competitiveness of Bradyrhizobium in pigeon pea root colonization in Indian soils . mBio. 12 (4), pp. e00423-21. https://doi.org/10.1128/mBio.00423-21

Exploring the Chemical Space of Macro- and Micro-Algae Using Comparative Metabolomics

A - Papers appearing in refereed journals
Jughes, A. H., Magot, F., Tawfike, A., Rad-Menendez, C., Thomas, N., Young, L. C., Stucchi, L., Carettoni, D., Stanley, M. S., Edrada-Ebel, R. and Duncan, K. R. 2021. Exploring the Chemical Space of Macro- and Micro-Algae Using Comparative Metabolomics. Microorganisms. 9 (2), p. 311. https://doi.org/10.3390/microorganisms9020311

A comparison of soil texture measurements using mid-infrared spectroscopy (MIRS) and laser diffraction analysis (LDA) in diverse soils

A - Papers appearing in refereed journals
Thomas, C. L., Hernandez, J. M. B., Dunham, S. J., McGrath, S. P. and Haefele, S. M. 2021. A comparison of soil texture measurements using mid-infrared spectroscopy (MIRS) and laser diffraction analysis (LDA) in diverse soils. Scientific Reports. 11 (1), p. 16. https://doi.org/10.1038/s41598-020-79618-y

Hillslope and groundwater contributions to streamflow in a Rocky Mountain watershed underlain by glacial till and fractured sedimentary bedrock

A - Papers appearing in refereed journals
Spencer, S. A., Anderson, A. E., Silins, U. and Collins, A. L. 2021. Hillslope and groundwater contributions to streamflow in a Rocky Mountain watershed underlain by glacial till and fractured sedimentary bedrock. Hydrology And Earth System Sciences. 25 (1), pp. 237-255. https://doi.org/10.5194/hess-25-237-2021

Investigation of the soil properties that affect Olsen P critical values in different soil types and impact on P fertiliser recommendations

A - Papers appearing in refereed journals
Tandy, S., Hawkins, J. M. B., Dunham, S. J., Hernandez, J. M. B., Granger, S. J., Yuan, H., McGrath, S. P. and Blackwell, M. S. A. 2021. Investigation of the soil properties that affect Olsen P critical values in different soil types and impact on P fertiliser recommendations. European Journal of Soil Science. 72 (4), pp. 1802-1816. https://doi.org/10.1111/ejss.13082

An exploratory study on the use of different composite magnetic and colour fingerprints in aeolian sediment provenance fingerprinting

A - Papers appearing in refereed journals
Nosrati, K, Akbari-Mahdiabad, M., Ayoubi, S. and Collins, A. L. 2021. An exploratory study on the use of different composite magnetic and colour fingerprints in aeolian sediment provenance fingerprinting. Catena. 200, p. 105182. https://doi.org/10.1016/j.catena.2021.105182

Assessment of the interpretability of data mining for the spatial modelling of water erosion using game theory

A - Papers appearing in refereed journals
Mohammadifar, A., Gholami, H., Comino, J. R. and Collins, A. L. 2021. Assessment of the interpretability of data mining for the spatial modelling of water erosion using game theory. Catena. 200, p. 105178. https://doi.org/10.1016/j.catena.2021.105178

Using different size fractions to source fingerprint fine-grained channel bed sediment in a large drainage basin in Iran

A - Papers appearing in refereed journals
Nosrati, K., Akbari-Mahdiabad, M., Fiener, P. and Collins, A. L. 2021. Using different size fractions to source fingerprint fine-grained channel bed sediment in a large drainage basin in Iran. Catena. 200, p. 105173. https://doi.org/10.1016/j.catena.2021.105173

Reproducing analysis of Sirius model simulations of wheat yields, 1892-2016

J - Computer programs
Addy, J., Semenov, M. A. and Mead, A. 2021. Reproducing analysis of Sirius model simulations of wheat yields, 1892-2016.

Simulated wheat yields from Sirius, 1892-2016

N - Datasets
Addy, J., Semenov, M. A. and Mead, A. 2021. Simulated wheat yields from Sirius, 1892-2016.

An equation of state for insect swarms

A - Papers appearing in refereed journals
Sinhuber, M., Van der Vaart, K., Yenchia, F., Reynolds, A. M. and Ouellette, N.T. 2021. An equation of state for insect swarms. Scientific Reports. 11 (3773). https://doi.org/10.1038/s41598-021-83303-z

The potential for soybean to diversify the production of plant-based protein in the UK

A - Papers appearing in refereed journals
Coleman, K., Whitmore, A. P., Hassall, K. L., Shield, I. F., Semenov, M. A., Dobermann, A., Bourhis, Y., Eskandary, A. and Milne, A. E. 2021. The potential for soybean to diversify the production of plant-based protein in the UK. Science of the Total Environment. 767, p. 144903. https://doi.org/10.1016/j.scitotenv.2020.144903

Meat consumers’ opinion regarding unhealthy pigs: should they be treated with antibiotics or euthanized on farm?

A - Papers appearing in refereed journals
Teixeira, D. L, Enriquez, D., Espinoza T. E., Bas, F. and Hotzel, M. J. 2021. Meat consumers’ opinion regarding unhealthy pigs: should they be treated with antibiotics or euthanized on farm? Antibiotics. 10 (1), p. 60. https://doi.org/10.3390/antibiotics10010060

MEDI: Macronutrient Extraction and Determination from invertebrates, a rapid, cheap and streamlined protocol

A - Papers appearing in refereed journals
Cuff, J. P., Wilder, S. M., Maximillian, P .T. G., Hunt, R., Oluwaseun, S., Morley, P. S., Badell-Grau, R. A., Vaughan, I. P., Bell, J. R., Orozco-terWengel, P., Symondson, W. O. C. and Muller, C. T. 2021. MEDI: Macronutrient Extraction and Determination from invertebrates, a rapid, cheap and streamlined protocol. Methods in ecology and evolution. 12 (4), pp. 593-601. https://doi.org/10.1111/2041-210X.13551

Accumulation and deposition of triacylglycerols in the starchy endosperm of wheat grain

A - Papers appearing in refereed journals
Gonzalez-Thuillier, I., Pellny, T. K., Tosi, P., Mitchell, R. A. C., Haslam, R. P. and Shewry, P. R. 2021. Accumulation and deposition of triacylglycerols in the starchy endosperm of wheat grain. Journal of Cereal Science. 98, p. 103167. https://doi.org/10.1016/j.jcs.2021.103167

Stability of farm income: The role of agricultural diversity and agri-environment scheme payments

A - Papers appearing in refereed journals
Harkness, C., Areal, F. J., Semenov, M. A., Senapati, N., Shield, I. F. and Bishop, J. 2021. Stability of farm income: The role of agricultural diversity and agri-environment scheme payments. Agricultural Systems. 187, p. 103009. https://doi.org/10.1016/j.agsy.2020.103009

Inorganic nitrogen fertilizer and high N application rate promote N2O emission and suppress CH4 uptake in a rotational vegetable system

A - Papers appearing in refereed journals
Carswell, A. M., Fan, Y., Misselbrook, T. H., Hao, X., Ding, R., Li, S. and Kang, S 2021. Inorganic nitrogen fertilizer and high N application rate promote N2O emission and suppress CH4 uptake in a rotational vegetable system. Soil & Tillage Research. 206 (February), p. 104848. https://doi.org/10.1016/j.still.2020.104848

Ammonia emissions from different pig production scales and their temporal variations in the North China Plain

A - Papers appearing in refereed journals
Cao, Y., Bai, Z., Misselbrook, T. H., Wang, X. and Ma, L. 2021. Ammonia emissions from different pig production scales and their temporal variations in the North China Plain. Journal of the Air & Waste Management Association. 71 (1), pp. 23-33. https://doi.org/10.1080/10962247.2020.1815895

Striking a balance between N sources: Mitigating soil acidification and accumulation of phosphorous and heavy metals from manure

A - Papers appearing in refereed journals
Cai, Z., Wang, B., Zhang, L., Wen, S., Xu, M., Misselbrook, T. H., Carswell, A. M. and Gao, S. 2021. Striking a balance between N sources: Mitigating soil acidification and accumulation of phosphorous and heavy metals from manure. Science of the Total Environment. 754 (1 February), p. 142189. https://doi.org/10.1016/j.scitotenv.2020.142189

Cytotoxic Activity and Metabolic Profiling of Fifteen Euphorbia Species

A - Papers appearing in refereed journals
El-Hawary, S. S., Mohammed, R., Tawfike, A. F., Lithy, N. M., AbouZid, S. F., Amin, M. N., Abdelmohsen, U. R. and Amin, E. 2021. Cytotoxic Activity and Metabolic Profiling of Fifteen Euphorbia Species. Metabolites. 11 (1), p. 15. https://doi.org/10.3390/metabo11010015

The contribution of arbuscular mycorrhizal fungi to ecosystem respiration and methane flux in an ephemeral plants-dominated desert

A - Papers appearing in refereed journals
Yue, P., Cui, X., Zuo, X., Li, K., Wang, S., Jia, Y., Misselbrook, T. H. and Liu, X. 2021. The contribution of arbuscular mycorrhizal fungi to ecosystem respiration and methane flux in an ephemeral plants-dominated desert. Land Degradation & Development. 32 (4), pp. 1844-1853. https://doi.org/10.1002/ldr.3838

Tolerance to oxidative stress is associated with both oxidative stress response and inherent growth in a fungal wheat pathogen

A - Papers appearing in refereed journals
Zhong, Z., MacDonald, B. A. and Palma-Guerrero, J. 2021. Tolerance to oxidative stress is associated with both oxidative stress response and inherent growth in a fungal wheat pathogen . Genetics. 217 (2), p. iyaa022. https://doi.org/10.1093/genetics/iyaa022

The Outstanding Scientist, R.A. Fisher: His Views on Eugenics and Race

A - Papers appearing in refereed journals
Bodmer, W., Bailey, R. A., Charlesworth, B., Eyre-Walker, A., Farewell, V., Mead, A. and Senn, S. 2021. The Outstanding Scientist, R.A. Fisher: His Views on Eugenics and Race. Heredity. https://doi.org/10.1038/s41437-020-00394-6

Application of a triple 15N tracing technique to elucidate N transformations in a UK grassland soil

A - Papers appearing in refereed journals
Loick, N., Dixon, E. R., Matthews, G. P., Muller, C., Ciganda, V. S., Lopez-Aizpun, M., Repullo, M. A. and Cardenas, L. M. 2021. Application of a triple 15N tracing technique to elucidate N transformations in a UK grassland soil. Geoderma. 385, p. 114844. https://doi.org/10.1016/j.geoderma.2020.114844

Current advisory interventions for grazing ruminant farming cannot close exceedance of modern background sediment loss – Assessment using an instrumented farm platform and modelled scaling out

A - Papers appearing in refereed journals
Collins, A. L., Zhang, Y., Upadhayay, H., Pulley, S., Granger, S. J., Harris, P., Sint, H. M. and Griffith, B. A. 2021. Current advisory interventions for grazing ruminant farming cannot close exceedance of modern background sediment loss – Assessment using an instrumented farm platform and modelled scaling out. Environmental Science & Policy. 116 (2021), pp. 114-127. https://doi.org/10.1016/j.envsci.2020.11.004

Tillage practices affect weeds differently in monoculture vs crop rotation

A - Papers appearing in refereed journals
MacLaren, C., Labuschagne, J. and Swanepoel, P. A. 2021. Tillage practices affect weeds differently in monoculture vs crop rotation. Soil & Tillage Research. 205, p. 104795. https://doi.org/10.1016/j.still.2020.104795

Eucalypt harvest residue management influences microbial community structure and soil organic matter fractions in an afforested grassland

A - Papers appearing in refereed journals
Oliveira, F. C. C., Ferreira, G. W. D., Dungait, J. A. J., Araujo, E. F., Soares, E. M. B. and Silva, I. R. 2021. Eucalypt harvest residue management influences microbial community structure and soil organic matter fractions in an afforested grassland. Soil & Tillage Research. 205, p. 104787. https://doi.org/10.1016/j.still.2020.104787

Sublethal and transgenerational effects of lambda-cyhalothrin on the mirid bugs Lygus pratensis Linnaeus and Polymerus cognatus Fieber

A - Papers appearing in refereed journals
Tan, Y., Jia, B., Foster, S. P., Homem, R. A., Williamson, M. S., Han, H-B., Shan, Y-M. and Pang, B-P. 2021. Sublethal and transgenerational effects of lambda-cyhalothrin on the mirid bugs Lygus pratensis Linnaeus and Polymerus cognatus Fieber . Crop Protection. 139 (January), p. 105354. https://doi.org/10.1016/j.cropro.2020.105354

Artificial neural networks for monitoring network optimisation—a practical example using a national insect survey

A - Papers appearing in refereed journals
Bourhis, Y., Bell, J. R., Van Den Bosch, F. and Milne, A. E. 2021. Artificial neural networks for monitoring network optimisation—a practical example using a national insect survey. Environmental Modelling and Software. 135, p. 104925. https://doi.org/10.1016/j.envsoft.2020.104925

Sampling pollen beetle (Brassicogethes aeneus) pressure in oilseed rape: which method is best?

A - Papers appearing in refereed journals
Seimandi-Corda, G., Jenkins, T. and Cook, S. M. 2021. Sampling pollen beetle (Brassicogethes aeneus) pressure in oilseed rape: which method is best? Pest Management Science. 77 (6), pp. 2785-2794. https://doi.org/10.1002/ps.6310

Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to ABA treatment

A - Papers appearing in refereed journals
Chen, Z., Zhou, L., Jiang, P., Lu, R., Halford, N. G. and Liu, C. 2021. Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to ABA treatment . BMC Genomics. 22 (article), p. 300. https://doi.org/10.1186/s12864-021-07601-6

Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity

A - Papers appearing in refereed journals
Neal, A. L., Hughes, D. J., Clark, I. M., Jansson, J. K. and Hirsch, P. R. 2021. Microbiome Aggregated Traits and Assembly are More Sensitive to Soil Management than Diversity. mSystems. 6 (3), pp. e01056-20. https://doi.org/10.1128/mSystems.01056-20

Genomics accelerated isolation of a new stem rust avirulence gene - wheat resistance gene pair

A - Papers appearing in refereed journals
Upadhyaya, N. M, Mago, R., Panwar, V., Hewitt, T., Luo, M., Chen, J., Sperschneider, J., Nguyen-Phuc, H., Wang, A., Ortiz, D., Hac, L., Bhatt. D., Li, F., Zhang, J., Ayliffe, M., Figueroa, M., Kanyuka, K., Ellis, J. G. and Dodds, P. N. 2021. Genomics accelerated isolation of a new stem rust avirulence gene - wheat resistance gene pair. Nature Plants. https://doi.org/10.1038/s41477-021-00971-5

Remarkable recent changes in genetic diversity of the avirulence gene AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals
Stephens, C., Olmez, F., Blyth, H., McDonald, M., Bansal, A., Turgay, E. B., Hahn, F., Saintenac, C., Nekrasov, V., Solomon, P., Milgate, A., Fraaije, B. A., Rudd, J. J. and Kanyuka, K. 2021. Remarkable recent changes in genetic diversity of the avirulence gene AvrStb6 in global populations of the wheat pathogen Zymoseptoria tritici. Molecular Plant Pathology. 22 (9), pp. 1121-1133. https://doi.org/10.1111/mpp.13101

Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality

A - Papers appearing in refereed journals
Oddy, J., Alarcon-Reverte, R., Wilkinson, M. D., Ravet, K., Raffan, S., Minter, A., Mead, A., Elmore, J. S., Moreira de Almeida, I., Cryer, N., Halford, N. G. and Pearce, S. 2021. Reduced free asparagine in wheat grain resulting from a natural deletion of TaASNB2: investigating and exploiting diversity in the asparagine synthetase gene family to improve wheat quality. BMC Plant Biology. 21 (1), p. 302. https://doi.org/10.1186/s12870-021-03058-7

Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2

A - Papers appearing in refereed journals
Raffan, S., Sparks, C. A., Huttly, A. K., Hyde, L., Martignago, D., Mead, A., Hanley, S. J., Wilkinson, P., Barker, G., Edwards, K. J., Curtis, T. Y., Usher, S. L., Kosik, O. and Halford, N. G. 2021. Wheat with greatly reduced accumulation of free asparagine in the grain, produced by CRISPR/Cas9 editing of asparagine synthetase gene TaASN2 . Plant Biotechnology Journal. 19 (8), pp. 1602-1613. https://doi.org/10.1111/pbi.13573

The impact of weather and increased atmospheric CO2 from 1892 to 2016 on simulated yields of UK wheat

A - Papers appearing in refereed journals
Addy, J. W. G., Ellis, R.H., Macdonald, A. J., Semenov, M. A. and Mead, A. 2021. The impact of weather and increased atmospheric CO2 from 1892 to 2016 on simulated yields of UK wheat. Journal of the Royal Society Interface. 18 (179), p. 20210250. https://doi.org/10.1098/rsif.2021.0250

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