Rothamsted Research

TitleRothamsted Research
TypeInstitute

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A modified Agrobacterium-mediated transformation for two oomycete pathogens

A - Papers appearing in refereed journals
Wang, L., Zhao, F., Liu, H., Chen, H., Zhang, F., Li, S., Sun, T., Nekrasov, V., Huang, S. and Dong, S. 2023. A modified Agrobacterium-mediated transformation for two oomycete pathogens. PLOS Pathogens. 19 (4), p. e1011346. https://doi.org/10.1371/journal.ppat.1011346

Explainable neural networks for trait-based multispecies distribution modelling—A case study with butterflies and moths

A - Papers appearing in refereed journals
Bourhis, Y., Bell, J. R., Shortall, C. R., Kunin, W. and Milne, A. E. 2023. Explainable neural networks for trait-based multispecies distribution modelling—A case study with butterflies and moths. Methods in ecology and evolution. 14 (6), pp. 1531-1542. https://doi.org/10.1111/2041-210X.14097

A conceptual framework for understanding ecosystem trade-offs and synergies, in communal rangeland systems

A - Papers appearing in refereed journals
Bennett, J., Marandure, T., Hawkins, H., Mapiye, C., Palmer, A., Lemke, S., Wu, L. and Moradzadeh, M. 2023. A conceptual framework for understanding ecosystem trade-offs and synergies, in communal rangeland systems. Ecosystem Services. 61, p. 101533. https://doi.org/10.1016/j.ecoser.2023.101533

On correlation between canopy vegetation and growth indexes of maize varieties with different nitrogen efficiencies

A - Papers appearing in refereed journals
Zhao, X., Wang, S., Wen, T., Xu, J., Huang, B., Yan, S., Gao, G., Zhao, Y., Li, H., Qiao, J., Yang, J., Wu, L., Wang, H., Liu, T. and Mu, X. 2023. On correlation between canopy vegetation and growth indexes of maize varieties with different nitrogen efficiencies. Open Life Sciences. 18 (1), p. 20220566. https://doi.org/10.1515/biol-2022-0566

Manure amendment acts as a recommended fertilization for improving carbon sequestration efficiency in soils of typical drylands of China

A - Papers appearing in refereed journals
Liang, S., Sun, N., Wang, S., Colinet, G., Longdoz, B., Meersmans, J., Wu, L. and Xu, M. 2023. Manure amendment acts as a recommended fertilization for improving carbon sequestration efficiency in soils of typical drylands of China . Frontiers in Environmental Science. 11, p. 1173509. https://doi.org/10.3389/fenvs.2023.1173509

Novel and holistic approaches are required to realise allelopathic potential for weed management

A - Papers appearing in refereed journals
Hickman, D., Comont, D., Rasmussen, A. and Birkett, M. A. 2023. Novel and holistic approaches are required to realise allelopathic potential for weed management. Ecology and Evolution. 13 (4), p. e10018. https://doi.org/10.1002/ece3.10018

Editorial: Targeted and untargeted metabolomics for the evaluation of plant metabolites in response to the environment

A - Papers appearing in refereed journals
Han, W., Ward, J. L., Kong, Y. and Li, X. 2023. Editorial: Targeted and untargeted metabolomics for the evaluation of plant metabolites in response to the environment. Frontiers in Plant Science. 14, p. 1167513. https://doi.org/10.3389/fpls.2023.1167513

A chromosome-scale genome assembly of the pollen beetle, Brassicogethes, provides insight into cytochrome P450-mediated pyrethroid resistance

A - Papers appearing in refereed journals
King, R., Boaventure, D., Hunt, B. J., Hayward, A., Singh, K. S., Gutbrod, O., Zimmer, C. T., Williamson, M. S., Field, L. M., Bass, C. G. and Nauen, R. 2023. A chromosome-scale genome assembly of the pollen beetle, Brassicogethes, provides insight into cytochrome P450-mediated pyrethroid resistance. Entomologia Generalis. 43 (3), pp. 639-648. https://doi.org/10.1127/entomologia/2023/1832

Inhibition of Rice Germination by Ustiloxin A Involves Alteration in Carbon Metabolism and Amino Acid Utilization

A - Papers appearing in refereed journals
Fu, X., Jin, Y., Paul, M. J., Yuan, M., Liang, X., Cui, R., Huang, Y-J., Peng, W. and Liang, X. 2023. Inhibition of Rice Germination by Ustiloxin A Involves Alteration in Carbon Metabolism and Amino Acid Utilization. Frontiers in Plant Science. 14, p. 1168985. https://doi.org/10.3389/fpls.2023.1168985

Separating N2O production and consumption in intact agricultural soil cores at different moisture contents and depths

A - Papers appearing in refereed journals
Button, E. S., Marsden, K. A., Nightingale, P. D., Dixon, E. R., Chadwick, D. R., Jones, D. L. and Cardenas, L. M. 2023. Separating N2O production and consumption in intact agricultural soil cores at different moisture contents and depths. European Journal of Soil Science. 74 (2), p. e13363. https://doi.org/10.1111/ejss.13363

Measured and modeled nitrogen balances in lowland rice-pasture rotations in temperate South America

A - Papers appearing in refereed journals
Castillo, J., Kirk, G. J. D., Rivero, M. J., Fabini, G., Terra, J. A., Ayala, W., Roel, A., Irisarri, P. and Haefele, S. M. 2023. Measured and modeled nitrogen balances in lowland rice-pasture rotations in temperate South America. Frontiers in Sustainable Food Systems. 7, p. 1103118. https://doi.org/10.3389/fsufs.2023.1103118

Ectopic expression of pigeonpea Orf147 gene imparts partial sterility in Cicer arietinum

A - Papers appearing in refereed journals
Bhattacharya, J., Reddy, D. S., Prasad, K., Nitnavare, R., Bhatnagar-Mathur, P. and Reddy, P. S. 2023. Ectopic expression of pigeonpea Orf147 gene imparts partial sterility in Cicer arietinum. Gene. 868, p. 147372. https://doi.org/10.1016/j.gene.2023.147372

Is sorghum a promising summer catch crop for reducing nitrate accumulation and enhancing eggplant yield in intensive greenhouse vegetable systems?

A - Papers appearing in refereed journals
Ma, Y., Kang, L., Li, Y., Zhang, X., Cardenas, L. M. and Chen, Q. 2023. Is sorghum a promising summer catch crop for reducing nitrate accumulation and enhancing eggplant yield in intensive greenhouse vegetable systems? Plant and Soil. https://doi.org/10.1007/s11104-023-05923-w

Uncovering plant epigenetics: new insights into cytosine methylation in rye genomes

A - Papers appearing in refereed journals
Kaur, N., Nayakoti, S., Brock, T. and Halford, N. G. 2023. Uncovering plant epigenetics: new insights into cytosine methylation in rye genomes. Journal of Experimental Botany. 74 (12), pp. 3395-3398. https://doi.org/10.1093/jxb/erad144

Hydro-chemical responses at different scales in a rural catchment, UK, and implications for managing the unintended consequences of agriculture

A - Papers appearing in refereed journals
Granger, S. J., Upadhayay, H. and Collins, A. L. 2023. Hydro-chemical responses at different scales in a rural catchment, UK, and implications for managing the unintended consequences of agriculture. Environmental Research. 228, p. 115826. https://doi.org/10.1016/j.envres.2023.115826

Investigating the effect of seismicity on spatial sediment sources and loads using the fingerprinting approach

A - Papers appearing in refereed journals
Ashtari, N., Nosrati, K., Ommi, S. and Collins, A. L. 2023. Investigating the effect of seismicity on spatial sediment sources and loads using the fingerprinting approach. Catena. 227 (15 June), p. 107091. https://doi.org/10.1016/j.catena.2023.107091

Fungal plant pathogen "mutagenomics" reveals tagged and untagged mutations in Zymoseptoria tritici and identifies SSK2 as key morphogenesis and stress-responsive virulence factor

A - Papers appearing in refereed journals
Blyth, H., Smith, D., King, R., Bayon, C., Ashfield, T., Walpole, H., Venter, E., Kanyuka, K. and Rudd, J. J. 2023. Fungal plant pathogen "mutagenomics" reveals tagged and untagged mutations in Zymoseptoria tritici and identifies SSK2 as key morphogenesis and stress-responsive virulence factor. Frontiers in Plant Science. 14, p. 1140824. https://doi.org/10.3389/fpls.2023.1140824

Spectral soil analysis for fertilizer recommendations by coupling with QUEFTS for maize in East Africa: A sensitivity analysis

A - Papers appearing in refereed journals
Hassall, K. L., Gashaw-Asrat, T., Haefele, S. M. and Breure, T. 2023. Spectral soil analysis for fertilizer recommendations by coupling with QUEFTS for maize in East Africa: A sensitivity analysis. Geoderma. 432, p. 116397. https://doi.org/10.1016/j.geoderma.2023.116397

Evaluation of pedotransfer functions to estimate some of soil hydraulic characteristics in North Africa A case study from Morocco

A - Papers appearing in refereed journals
Beniaich, A., Otten, W., Shin, H.-C., Cooper, H., Rickson, J., Soulaimani, A. and El Gharous, M. 2023. Evaluation of pedotransfer functions to estimate some of soil hydraulic characteristics in North Africa A case study from Morocco. Frontiers in Environmental Science. 11, p. 1090688. https://doi.org/10.3389/fenvs.2023.1090688

Impact of Contrasting Poultry Exposures on Human, Poultry, and Wastewater Antibiotic Resistomes in Bangladesh

A - Papers appearing in refereed journals
Williams, A. D., Rousham, E., Neal, A. L., Amin, M. B., Hobman, J. L., Stekel, D. and Islam, M. A. 2023. Impact of Contrasting Poultry Exposures on Human, Poultry, and Wastewater Antibiotic Resistomes in Bangladesh. Microbiology Spectrum. 11 (6), pp. 10.1128/spectrum.01763-23. https://doi.org/10.1128/spectrum.01763-23

Post-farming land restoration schemes exhibit higher soil aggregate stability and organic carbon: Evidence in the Three Gorges Reservoir Area, China

A - Papers appearing in refereed journals
Han, C., Song, M., Tang, Q, Wei, J., He, X. and Collins, A. L. 2023. Post-farming land restoration schemes exhibit higher soil aggregate stability and organic carbon: Evidence in the Three Gorges Reservoir Area, China. Catena. 227, p. 107099. https://doi.org/10.1016/j.catena.2023.107099

Uncertainty assessment of spatial soil information

A - Papers appearing in refereed journals
Heuvelink, G. B. M and Webster, R. 2023. Uncertainty assessment of spatial soil information. Encyclopedia of soils in the environment. 4, pp. 671-683. https://doi.org/10.1016/B978-0-12-822974-3.00174-9

Genetic and Agronomic Control of Free Asparagine Accumulation in Wheat (Triticum aestivum)

F - Theses
Oddy, J. 2023. Genetic and Agronomic Control of Free Asparagine Accumulation in Wheat (Triticum aestivum). F - Theses Rothamsted Research Sustainable Soils and Crops

Necrotrophic fungal infection affects indolic glucosinolate metabolism in Brassica rapa

A - Papers appearing in refereed journals
Aghajanzadeh, T. A., Watanabe, M., Tohge, T., Hawkesford, M. J., Fernie, A. R., Hoefgen, R., Elzenga, J. T. M. and De Kok, L. J. 2023. Necrotrophic fungal infection affects indolic glucosinolate metabolism in Brassica rapa. Acta physiologiae plantarum. 45 (5), p. 64. https://doi.org/10.1007/s11738-023-03546-3

To own or not to own? Land tenure security and production risk in small-scale farming

A - Papers appearing in refereed journals
Oluseyi, K. O., Olagunju, K. A., Ogunniyi, A. I., Omotayo, A. O. and Oyetunde-Usman, Z. 2023. To own or not to own? Land tenure security and production risk in small-scale farming. Land Use Policy. 127, p. 106584. https://doi.org/10.1016/j.landusepol.2023.106584

Changes in soil surface properties under simulated rainfall and the effect of surface roughness on runoff, infiltration and soil loss

A - Papers appearing in refereed journals
Bahddou, S., Otten, W., Whalley, W. R., Shin, H., El Gharous, M. and Rickson, R. J. 2023. Changes in soil surface properties under simulated rainfall and the effect of surface roughness on runoff, infiltration and soil loss. Geoderma. 431, p. 116341. https://doi.org/10.1016/j.geoderma.2023.116341

Use of untargeted metabolomics to analyse changes in extractable soil organic matter in response to long-term fertilisation

A - Papers appearing in refereed journals
Tang, S., Ma, Q., Zhou, J., Pan, W., Chadwick, D. R., Gregory, A. S., Wu, L. and Jones, D. L. 2023. Use of untargeted metabolomics to analyse changes in extractable soil organic matter in response to long-term fertilisation. Biology And Fertility Of Soils. 59, pp. 301-316. https://doi.org/10.1007/s00374-023-01706-8

The effect of shear-dependent flocculation on the multimodality of effective particle size distributions in a gravel-bed river during high flows

A - Papers appearing in refereed journals
Maltauro, R., Stone, M., Collins, A. L., Krishnappan, B. G. and Silins, U. 2023. The effect of shear-dependent flocculation on the multimodality of effective particle size distributions in a gravel-bed river during high flows. Journal of Soils and Sediments. 23, pp. 3589-3601. https://doi.org/10.1007/s11368-023-03455-5

Quantification of N and C cycling during aerobic composting, including automated direct measurement of N-2, N2O, NO, NH3, CO2 and CH4 emissions

A - Papers appearing in refereed journals
Cao, Y., Wang, X., Misselbrook, T. H., Wang, R., Zheng, X. and Ma, L. 2023. Quantification of N and C cycling during aerobic composting, including automated direct measurement of N-2, N2O, NO, NH3, CO2 and CH4 emissions. Science of the Total Environment. 857 (2), p. 159177. https://doi.org/10.1016/j.scitotenv.2022.159177

Climate change effects on northern Spanish grassland-based dairy livestock systems

A - Papers appearing in refereed journals
Jebari, A., Dela Prado, A., Pardo, G. and Alvaro-Fuentes, J. 2023. Climate change effects on northern Spanish grassland-based dairy livestock systems. Plant and Soil. https://doi.org/10.1007/s11104-023-05936-5

Changing patterns of the East Asian monsoon drive shifts in migration and abundance of a globally important rice pest

A - Papers appearing in refereed journals
Lv, H., Zhai, M., Zeng, J., Zhang, Y-Y., Zhu, F., Shen, H., Qiu, K., Gao, B., Reynolds, D. R., Chapman, J. W. and Hu, G. 2023. Changing patterns of the East Asian monsoon drive shifts in migration and abundance of a globally important rice pest. Global Change Biology. 29 (10), pp. 2655-2668. https://doi.org/10.1111/gcb.16636

A sublethal concentration of Sulfoxaflor has minimal impact on buff-tailed bumblebee (Bombus terrestris) locomotor behaviour under aversive conditioning

A - Papers appearing in refereed journals
James, L., Reynolds, A. M., Mellor, I. R. and Davies, T. G. E. 2023. A sublethal concentration of Sulfoxaflor has minimal impact on buff-tailed bumblebee (Bombus terrestris) locomotor behaviour under aversive conditioning. Toxics. 11 (3), p. 279. https://doi.org/10.3390/toxics11030279

A VEL3 histone deacetylase complex establishes a maternal epigenetic state controlling progeny seed dormancy

A - Papers appearing in refereed journals
Chen, X., Macgregor, D., Stefanto, F. L., Zhang, N., Barros-Galvao, T. and Penfield, S. 2023. A VEL3 histone deacetylase complex establishes a maternal epigenetic state controlling progeny seed dormancy. Nature Communications. 14, p. 2220. https://doi.org/10.1038/s41467-023-37805-1

Crop-specific ammonia volatilization rates and key influencing factors in the upland of China - A data synthesis

A - Papers appearing in refereed journals
Sha, Z., Ma, X., Liu, R-H., Wang, J., Lv, T., Goulding, K. W. T. and Liu, X. 2023. Crop-specific ammonia volatilization rates and key influencing factors in the upland of China - A data synthesis. Journal of Environmental Management. 336 (June), p. 117676. https://doi.org/10.1016/j.jenvman.2023.117676

A high soluble-fibre allele in wheat encodes a defective cell wall peroxidase responsible for dimerization of ferulate moieties on arabinoxylan

A - Papers appearing in refereed journals
Mitchell, R. A. C., Oszvald, M., Pellny, T. K., Freeman, J., Halsey, K., Sparks, C. A., Huttly, A. K., Specel, S., Leverington-Waite, M., Griffiths, S., Shewry, P. R. and Lovegrove, A. 2023. A high soluble-fibre allele in wheat encodes a defective cell wall peroxidase responsible for dimerization of ferulate moieties on arabinoxylan. bioRxiv. https://doi.org/10.1101/2023.03.08.531735

Sequestering organic carbon in soils through land use change and agricultural practices: a review

A - Papers appearing in refereed journals
Wu, L. 2023. Sequestering organic carbon in soils through land use change and agricultural practices: a review. Frontiers of Agricultural Science and Engineering - FASE. 10 (2), pp. 210-225. https://doi.org/10.15302/J-FASE-2022474

Residual correlation and ensemble modelling to improve crop and grassland models

A - Papers appearing in refereed journals
Sandor, R., Ehrhardt, F., Grace, P., Recous, S., Smith, P., Snow, V., Soussana, J., Basso, B., Bhatia, A., Brilli, L., Doltra, J., Dorich, C. D., Doro, L., Fitton, N., Grant, B., Harrison, M. T., Skiba, U., Kirschbaum, M. U., Klumpp, K., Laville, P., Leonard, J., Martin, R., Massad, R. S., Moore, A. D., Myrgiotis, V., Pattey, E., Rolinski, S., Sharp, J., Smith, W., Wu, L., Zhang, Q. and Bellocchi, G. 2023. Residual correlation and ensemble modelling to improve crop and grassland models. Environmental Modelling and Software. 161, p. 105625. https://doi.org/10.1016/j.envsoft.2023.105625

Effector-mediated partial and nonhost disease resistance in wheat

A - Papers appearing in refereed journals
Rudd, J. J. 2023. Effector-mediated partial and nonhost disease resistance in wheat. New Phytologist. 238, pp. 1340-1342. https://doi.org/10.1111/nph.18872

Greenhouse gas production, diffusion and consumption in a soil profile under maize and wheat production

A - Papers appearing in refereed journals
Button, E. S., Marshall, M., Sanchez-Rodriguez, A. R., Blaud, A., Abadie, M., Chadwick, D. R. and Jones, D. L. 2023. Greenhouse gas production, diffusion and consumption in a soil profile under maize and wheat production . Geoderma. 430, p. 116310. https://doi.org/10.1016/j.geoderma.2022.116310

Automated extraction of pod phenotype data from micro-computed tomograph

A - Papers appearing in refereed journals
Corcoran, E., Siles-Suarez, L., Kurup, S. and Ahnert, S. 2023. Automated extraction of pod phenotype data from micro-computed tomograph. Frontiers in Plant Science. 14, p. 1120182. https://doi.org/10.3389/fpls.2023.1120182

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