Rothamsted Research

TitleRothamsted Research
TypeInstitute

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One step ahead? The evolution of fungicide resistance in Septoria leaf blotch of wheat

C2 - Non-edited contributions to conferences
Lucas, J. A., Cools, H. J. and Fraaije, B. A. 2013. One step ahead? The evolution of fungicide resistance in Septoria leaf blotch of wheat. Abstracts Society for General Microbiology Autumn Conference, Brighton, 2-4 September 2013 . pp. 13

Risk assessment on the impact of environmental usage of triazoles on the development and spread of resistance to medical triazoles in Aspergillus species (ECDC Technical Report)

D1 - Technical reports: non-confidential
Kleinkauf, N., Verweij, P. E., Arendrup, M. C., Donnelly, P. J., Cuenca-Estrella, M., Fraaije, B. A., Melchers, W. J. G., Adriaenssens, N., Kema, G. H. J., Ullmann, A., Bowyer, P. and Denning, D. W. 2013. Risk assessment on the impact of environmental usage of triazoles on the development and spread of resistance to medical triazoles in Aspergillus species (ECDC Technical Report). ECDC, Stockholm. https://doi.org/10.2900/76274

CYP51 paralogues and azole sensitivity in Rhynchosporium commune

C2 - Non-edited contributions to conferences
Hawkins, N. J., Cools, H. J. and Fraaije, B. A. 2013. CYP51 paralogues and azole sensitivity in Rhynchosporium commune. Chinese Society for Plant Pathology.

Estimating penetrometer resistance and matric potential from the velocities of shear and compression waves

A - Papers appearing in refereed journals
Gao, W., Watts, C. W., Ren, T., Shin, H-C., Taherzadeh, S., Attenborough, K., Jenkins, M. and Whalley, W. R. 2013. Estimating penetrometer resistance and matric potential from the velocities of shear and compression waves. Soil Science Society of America Journal. 77, pp. 721-728. https://doi.org/10.2136/sssaj2012.0394

Evolution and spread of Mycosphaerella graminicola isolates overexpressing CYP51 or carrying different CYP51 variants in response to azole fungicide applications

C2 - Non-edited contributions to conferences
Fraaije, B. A., Atkins, S., Luo, J., De La Fuente, P. D., Hawkins, N. J. and Cools, H. J. 2013. Evolution and spread of Mycosphaerella graminicola isolates overexpressing CYP51 or carrying different CYP51 variants in response to azole fungicide applications. Chinese Society for Plant Pathology.

Update on the evolution and selection for azole and Succinate DeHydrogenase Inhibitor (SDHI) fungicide insensitivity in UK Mycosphaerella graminicola populations

C2 - Non-edited contributions to conferences
Fraaije, B. A. 2013. Update on the evolution and selection for azole and Succinate DeHydrogenase Inhibitor (SDHI) fungicide insensitivity in UK Mycosphaerella graminicola populations. Chinese Society for Plant Pathology.

Detection of azole insensitive CYP51 over-expressing strains of Mycosphaerella graminicola using loop-mediated isothermal amplification (LAMP) assays

C2 - Non-edited contributions to conferences
Fraaije, B. A. and Cools, H. J. 2013. Detection of azole insensitive CYP51 over-expressing strains of Mycosphaerella graminicola using loop-mediated isothermal amplification (LAMP) assays. Chinese Society for Plant Pathology.

Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases

C2 - Non-edited contributions to conferences
Fan, J., Urban, M., Parker, J. E., Brewer, H. C., Kelly, S. L., Hammond-Kosack, K. E., Fraaije, B. A., Liu, X. and Cools, H. J. 2013. Genus-specific CYP51C of Fusarium graminearum identified as a novel CYP51 rather than azole fungicide target sterol 14alpha-demethylases. Chinese Society for Plant Pathology.

13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis

A - Papers appearing in refereed journals
Beste, D. J. V., Noh, K., Niedenfuhr, S., Mendum, T. A., Hawkins, N. D., Ward, J. L., Beale, M. H., Wiechert, W. and Mcfadden, J. 2013. 13C-flux spectral analysis of host-pathogen metabolism reveals a mixed diet for intracellular Mycobacterium tuberculosis. Chemistry and Biology. 20 (8), pp. 1012-1021. https://doi.org/10.1016/j.chembiol.2013.06.012

Effects of nitrogen and sulfur fertilization on free amino acids, sugars and acrylamide-forming potential in potato

A - Papers appearing in refereed journals
Muttucumaru, N., Powers, S. J., Elmore, J. S., Mottram, D. S. and Halford, N. G. 2013. Effects of nitrogen and sulfur fertilization on free amino acids, sugars and acrylamide-forming potential in potato. Journal of Agricultural and Food Chemistry - JAFC. 61, pp. 6734-6742. https://doi.org/10.1021/jf401570x

Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley

C2 - Non-edited contributions to conferences
Lee, W-S., Rudd, J. J., Hammond-Kosack, K. E. and Kanyuka, K. 2013. Utilising virus-induced gene silencing (VIGS) to dissect plant defence signalling and the underlying plant defence mechanisms in wheat and barley. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-19 June 2013 .

Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum

A - Papers appearing in refereed journals
Lawler, K., Hammond-Kosack, K. E., Brazma, A. and Coulson, R. M. R. 2013. Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum. BMC Systems Biology. 7, p. 52. https://doi.org/10.1186/1752-0509-7-52

The SUGAR-DEPENDENT1 lipase limits triacyglycerol accumulation in vegetative tissues of Arabidopsis

A - Papers appearing in refereed journals
Kelly, A. A., Van-Erp, H., Quettier, A-L., Shaw, E., Menard, G. N., Kurup, S. and Eastmond, P. J. 2013. The SUGAR-DEPENDENT1 lipase limits triacyglycerol accumulation in vegetative tissues of Arabidopsis. Plant Physiology. 162, pp. 1282-1289. https://doi.org/10.1104/pp.113.219840

BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta

C2 - Non-edited contributions to conferences
Kanyuka, K., Ruiz, O., Rudd, J. J., Avrova, A. and Hammond-Kosack, K. E. 2013. BSMV-VOX: a virus mediated transient expression tool that enables the functional characterisation of small heterologous proteins in planta. Abstracts National Institutes of Bioscience Conference, Edinburgh, 18-20 June 2013 .

Culture-independent molecular approaches to microbial ecology in soil and rhizosphere

B - Book chapters etc edited externally
Hirsch, P. R., Mauchline, T. H. and Clark, I. M. 2013. Culture-independent molecular approaches to microbial ecology in soil and rhizosphere. in: Debruijn, F. J. (ed.) Molecular microbial ecology of the rhizosphere, Volume 1 John Wiley & Sons Hoboken, N.J.. pp. 45-55

Do root exudates exert more influence on rhizosphere bacterial community structure than other rhizodeposits?

B - Book chapters etc edited externally
Hirsch, P. R., Miller, A. J. and Dennis, P. G. 2013. Do root exudates exert more influence on rhizosphere bacterial community structure than other rhizodeposits? in: Debruijn, F. J. (ed.) Molecular microbial ecology of the rhizosphere, Volume 1 John Wiley & Sons Hoboken, N.J.. pp. 229-242

The significance of midsummer movements of Autographa gamma: implications for a mechanistic understanding of orientation behavior in a migrant moth

A - Papers appearing in refereed journals
Chapman, J. W., Lim, K. S. and Reynolds, D. R. 2013. The significance of midsummer movements of Autographa gamma: implications for a mechanistic understanding of orientation behavior in a migrant moth. Current Zoology. 59 (3), pp. 360-370. https://doi.org/10.1093/czoolo/59.3.360

Towards an improved inventory of N2O from agriculture: model evaluation of N2O emission factors and N fraction leached from different sources in UK agriculture

A - Papers appearing in refereed journals
Cardenas, L. M., Gooday, R., Brown, L., Scholefield, D., Cuttle, S., Gilhespy, S. L., Matthews, R. A., Misselbrook, T. H., Wang, J., Li, C., Hughes, G. and Lord, E. 2013. Towards an improved inventory of N2O from agriculture: model evaluation of N2O emission factors and N fraction leached from different sources in UK agriculture. Atmospheric Environment. 79, pp. 340-348. https://doi.org/10.1016/j.atmosenv.2013.06.033

Methylated arsenic species in rice: geographical variation, origin and uptake mechanisms

A - Papers appearing in refereed journals
Zhao, F-J., Zhu, Y-G. and Meharg, A. A. 2013. Methylated arsenic species in rice: geographical variation, origin and uptake mechanisms. Environmental Science & Technology. 47, pp. 3957-3966. https://doi.org/10.1021/es304295n

Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments

A - Papers appearing in refereed journals
Zhalnina, K., De Quadros, P. D., Gano, K. A., Davis-Richardson, A., Fagen, J. R., Brown, C. T., Giongo, A., Drew, J. C., Sayavedra-Soto, L. A., Arp, D. J., Camargo, F. A. O., Daroub, S. H., Clark, I. M., McGrath, S. P., Hirsch, P. R. and Triplett, E. W. 2013. Ca. Nitrososphaera and Bradyrhizobium are inversely correlated and related to agricultural practices in long-term field experiments. Frontiers in Microbiology. 4, p. 104. https://doi.org/10.3389/fmicb.2013.00104

Tracking bed bugs (Cimex lectularius:) a study of the effect of physiological and extrinsic factors on the response to bed bug-derived volatiles

A - Papers appearing in refereed journals
Weeks, E. N. I., Logan, J. G., Birkett, M. A., Pickett, J. A. and Cameron, M. M. 2013. Tracking bed bugs (Cimex lectularius:) a study of the effect of physiological and extrinsic factors on the response to bed bug-derived volatiles. Journal Of Experimental Biology. 216, pp. 460-469. https://doi.org/10.1242/jeb.074930

Using Arabidopsis to study shoot branching in biomass willow

A - Papers appearing in refereed journals
Ward, S. P., Salmon, J., Hanley, S. J., Karp, A. and Leyser, O. 2013. Using Arabidopsis to study shoot branching in biomass willow. Plant Physiology. 162 (June), pp. 800-811. https://doi.org/10.1104/pp.113.218461

Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue

B - Book chapters etc edited externally
Urban, M. and Hammond-Kosack, K. E. 2013. Molecular genetics and genomic approaches to explore Fusarium infection of wheat floral tissue. in: Brown, D. W. and Proctor, R. H. (ed.) Fusarium: genomics, molecular and cellular biology Caister Academic Press, Norwich, Norfolk. pp. 43-79

The role of semiochemicals in short-range location of aggregation sites in Adalia bipunctata (Coleoptera, Coccinellidae)

A - Papers appearing in refereed journals
Susset, E. C., Ramon-Portugal, F., Hemptinne, J-L., Dewhirst, S. Y., Birkett, M. A. and Magro, A. 2013. The role of semiochemicals in short-range location of aggregation sites in Adalia bipunctata (Coleoptera, Coccinellidae). Journal of Chemical Ecology. 39, pp. 591-601. https://doi.org/10.1007/s10886-013-0285-0

Aedes aegypti mosquitoes exhibit decreased repellency by DEET following previous exposure

A - Papers appearing in refereed journals
Stanczyk, N. M., Brookfield, J. F. Y., Field, L. M. and Logan, J. G. 2013. Aedes aegypti mosquitoes exhibit decreased repellency by DEET following previous exposure. PLOS ONE. 8, p. e54438. https://doi.org/10.1371/journal.pone.0054438

Involvement of Arabidopsis ACYL-COENZYME A DESATURASE-LIKE2 (At2g31360) in the biosynthesis of the very-long-chain monounsaturated fatty acid components of membrane lipids

A - Papers appearing in refereed journals
Smith, M. A., Dauk, M., Ramadan, H., Yang, H., Seamons, L. E., Haslam, R. P., Beaudoin, F., Ramirez-Erosa, I. and Forseille, L. 2013. Involvement of Arabidopsis ACYL-COENZYME A DESATURASE-LIKE2 (At2g31360) in the biosynthesis of the very-long-chain monounsaturated fatty acid components of membrane lipids. Plant Physiology. 161, pp. 81-96. https://doi.org/10.1104/pp.112.202325

Non-invasive characterization of pore-related and elastic properties of soils in linear Biot-Stoll theory using acoustic-to-seismic coupling

A - Papers appearing in refereed journals
Shin, H-C., Taherzadeh, S., Attenborough, K., Whalley, W. R. and Watts, C. W. 2013. Non-invasive characterization of pore-related and elastic properties of soils in linear Biot-Stoll theory using acoustic-to-seismic coupling. European Journal of Soil Science. 64 (3), pp. 308-323. https://doi.org/10.1111/ejss.12000

Reconstitution of EPA and DHA biosynthesis in Arabidopsis: iterative metabolic engineering for the synthesis of n-3 LC-PUFAs in transgenic plants

A - Papers appearing in refereed journals
Ruiz-Lopez, N., Haslam, R. P., Usher, S. L., Napier, J. A. and Sayanova, O. V. 2013. Reconstitution of EPA and DHA biosynthesis in Arabidopsis: iterative metabolic engineering for the synthesis of n-3 LC-PUFAs in transgenic plants. Metabolic Engineering. 17, pp. 30-41. https://doi.org/10.1016/j.ymben.2013.03.001

A simple iterative model accurately captures complex trapline formation by bumblebees across spatial scales and flower arrangements

A - Papers appearing in refereed journals
Reynolds, A. M., Lihoreau, M. and Chittka, L. 2013. A simple iterative model accurately captures complex trapline formation by bumblebees across spatial scales and flower arrangements. PLOS Computational Biology. 9, p. e1002938 (10pp). https://doi.org/10.1371/journal.pcbi.1002938

Beating the odds in the aerial lottery: passive dispersers select conditions at takeoff that maximize their expected fitness on landing

A - Papers appearing in refereed journals
Reynolds, A. M. 2013. Beating the odds in the aerial lottery: passive dispersers select conditions at takeoff that maximize their expected fitness on landing. The American Naturalist. 181, pp. 555-561. https://doi.org/10.1086/669677

Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions

A - Papers appearing in refereed journals
Puttock, A., Macleod, C. J. A., Bol, R., Sessford, P., Dungait, J. A. J. and Brazier, R. E. 2013. Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions. Earth Surface Processes And Landforms. 38 (13), pp. 1602-1611. https://doi.org/10.1002/esp.3455

Development of a high-throughput real-time PCR assay for the detection of the R81T mutation in the nicotinic acetylcholine receptor of neonicotinoid-resistant Myzus persicae

A - Papers appearing in refereed journals
Puinean, A. M., Elias, J., Slater, R., Warren, A., Field, L. M., Williamson, M. S. and Bass, C. 2013. Development of a high-throughput real-time PCR assay for the detection of the R81T mutation in the nicotinic acetylcholine receptor of neonicotinoid-resistant Myzus persicae. Pest Management Science. 69 (2), pp. 195-199. https://doi.org/10.1002/ps.3300

Plant-available soil phosphorus. Part I: the response of winter wheat and spring barley to Olsen P on a silty clay loam

A - Papers appearing in refereed journals
Poulton, P. R., Johnston, A. E. and White, Robin P. 2013. Plant-available soil phosphorus. Part I: the response of winter wheat and spring barley to Olsen P on a silty clay loam. Soil Use and Management. 29 (1), pp. 4-11. https://doi.org/10.1111/j.1475-2743.2012.00450.x

The interactions between piperonyl butoxide and E4, a resistance-associated esterase from the peach-potato aphid, Myzus persicae Sulzer (Hemiptera: Aphididae)

A - Papers appearing in refereed journals
Philippou, D., Borzatta, V., Capparella, E., Moroni, L., Field, L. M. and Moores, G. D. 2013. The interactions between piperonyl butoxide and E4, a resistance-associated esterase from the peach-potato aphid, Myzus persicae Sulzer (Hemiptera: Aphididae). Pest Management Science. 69 (4), pp. 499-506. https://doi.org/10.1002/ps.3400

The Arabidopsis cer26 mutant, like the cer2 mutant, is specifically affected in the very long chain fatty acid elongation process

A - Papers appearing in refereed journals
Pascal, S., Bernard, A., Sorel, M., Pervent, M., Vile, D., Haslam, R. P., Napier, J. A., Lessire, R., Domergue, F. and Joubes, J. 2013. The Arabidopsis cer26 mutant, like the cer2 mutant, is specifically affected in the very long chain fatty acid elongation process. The Plant Journal. 73 (5), pp. 733-746. https://doi.org/10.1111/tpj.12060

Prothioconazole and prothioconazole-desthio activities against Candida albicans sterol 14-alpha-demethylase

A - Papers appearing in refereed journals
Parker, J. E., Warrilow, A. G. S., Cools, H. J., Fraaije, B. A., Lucas, J. A., Rigdova, K., Griffiths, W. J., Kelly, D. E. and Kelly, S. L. 2013. Prothioconazole and prothioconazole-desthio activities against Candida albicans sterol 14-alpha-demethylase. Applied and Environmental Microbiology. 79, pp. 1639-1645. https://doi.org/10.1128/AEM.03246-12

Competition between isolates of Zoophthora radicans co-infecting Plutella xylostella populations

A - Papers appearing in refereed journals
Morales-Vidal, S., Alatorre-Rosas, R., Clark, S. J., Pell, J. K. and Guzman-Franco, A. W. 2013. Competition between isolates of Zoophthora radicans co-infecting Plutella xylostella populations. Journal of Invertebrate Pathology. 113, pp. 137-145. https://doi.org/10.1016/j.jip.2013.03.002

High resolution SIMS analysis of arsenic in rice

A - Papers appearing in refereed journals
Moore, K. L., Hawes, C. R., McGrath, S. P., Zhao, F-J. and Grovenor, C. R. M. 2013. High resolution SIMS analysis of arsenic in rice. Surface And Interface Analysis. 45 (1), pp. 309-311. https://doi.org/10.1002/sia.4903

Effects of mulching, N-fertilization and intercropping with Desmodium uncinatum on Striga hermonthica infestation in maize

A - Papers appearing in refereed journals
Midega, C. A. O., Pittchar, J., Salifu, D., Pickett, J. A. and Khan, Z. R. 2013. Effects of mulching, N-fertilization and intercropping with Desmodium uncinatum on Striga hermonthica infestation in maize. Crop Protection. 44, pp. 44-49. https://doi.org/10.1016/j.cropro.2012.10.018

Identification of a cytochrome b5-fusion desaturase responsible for the synthesis of triunsaturated sphingolipid long chain bases in the marine diatom Thalassiosira pseudonana

A - Papers appearing in refereed journals
Michaelson, L. V., Markham, J. E., Zaeuner, S., Matsumoto, M., Chen, M., Cahoon, E. B. and Napier, J. A. 2013. Identification of a cytochrome b5-fusion desaturase responsible for the synthesis of triunsaturated sphingolipid long chain bases in the marine diatom Thalassiosira pseudonana. Phytochemistry. 90, pp. 50-55. https://doi.org/10.1016/j.phytochem.2013.02.010

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