Rothamsted Research

TitleRothamsted Research
TypeInstitute

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Quantifying the impacts of the neonicotinoid restriction on oilseed rape pest control and productivity

F - Theses
Coston, D. 2021. Quantifying the impacts of the neonicotinoid restriction on oilseed rape pest control and productivity. F - Theses

Optimizing Genomic-Enabled Prediction in Small-Scale Maize Hybrid Breeding Programs: A Roadmap Review

A - Papers appearing in refereed journals
Fritsche-Neto, R., Galli, G., Borges, K. L. R., Costa-Neto, G., Alves, F. C., Sabadin, F., Lyra, D. H., Morais, P. P. P., De Andrade, L. R. B., Granato, I. and Crossa, J. 2021. Optimizing Genomic-Enabled Prediction in Small-Scale Maize Hybrid Breeding Programs: A Roadmap Review. Frontiers in Plant Science. 12, p. 658267. https://doi.org/10.3389/fpls.2021.658267

Fitness Cost Associated With Enhanced EPSPS Gene Copy Number and Glyphosate Resistance in an Amaranthus tuberculatus Population

A - Papers appearing in refereed journals
Cockerton, H. m., Kaundun, S. S., Nguyen, L., Hutchings, S. J., Dale, R. P., Howell, A. and Neve, P. 2021. Fitness Cost Associated With Enhanced EPSPS Gene Copy Number and Glyphosate Resistance in an Amaranthus tuberculatus Population. Frontiers in Plant Science. 12, p. 651381. https://doi.org/10.3389/fpls.2021.651381

A redundancy analysis of the relative impact of different feedstuffs on nitrogen use efficiency and excretion partitioning in beef cattle fed diets with contrasting protein concentrations

A - Papers appearing in refereed journals
Angelidis, A. E., Rempelos, L., Crompton, L., Misselbrook, T. H., Yan, T., Reynolds, C. K. and Stergiadis, S. 2021. A redundancy analysis of the relative impact of different feedstuffs on nitrogen use efficiency and excretion partitioning in beef cattle fed diets with contrasting protein concentrations. Animal Feed Science and Technology. 277, p. 114961. https://doi.org/10.1016/j.anifeedsci.2021.114961

How Closely Is Potassium Mass Balance Related to Soil Test Changes?

B - Book chapters etc edited externally
Franzen, D. W., Goulding, K. W. T., Mallarino, A. P. and Bell, M. J. 2021. How Closely Is Potassium Mass Balance Related to Soil Test Changes? in: Murrell, S. T., Mikkelsen, R. L., Sulewski, G., Norton, R. and Thompson, M. L. (ed.) Improving Potassium Recommendations for Agricultural Crops Cham, Switzerland Springer.

Complex polyploid and hybrid species in an apomictic and sexual tropical forage grass group: genomic composition and evolution in Urochloa (Brachiaria) species

A - Papers appearing in refereed journals
Tomaszewska, P., Vorontsova, M. S., Renvoize, S. A., Ficinski, S. Z., Tohme, J., Schwarzacher, T., Castiblanco, V., De Vega, J. J., Mitchell, R. A. C. and Heslop-Harrison, J. S. 2021. Complex polyploid and hybrid species in an apomictic and sexual tropical forage grass group: genomic composition and evolution in Urochloa (Brachiaria) species. Annals of Botany. p. mcab147. https://doi.org/10.1093/aob/mcab147

Can Long-Term Experiments Help Us Understand, and Manage, the Wider Landscape—Examples from Rothamsted, England

B - Book chapters etc edited externally
Poulton, P. R. and Johnston, A. E. 2021. Can Long-Term Experiments Help Us Understand, and Manage, the Wider Landscape—Examples from Rothamsted, England. in: Mueller, L., Sychev, V. G., Dronin, N. M. and Eulenstein, F. (ed.) Exploring and Optimizing Agricultural Landscapes. Innovations in Landscape Research Springer. pp. 233-252

Agricultural Landscapes: History, Status and Challenges

B - Book chapters etc edited externally
Muller, L., Eulenstein, F., Dronin, N. M., Mirschel, W., McKensie, B. M., Antrop, M., Jones, M., Dannowski, R., Schindler, U., Behrendt, A., Rukhovich, O. V., Sychev, V. G., Scheudzhen, A. K., Romanenkov, V. A., Trofimov, I., Robinson, G. M., Schreg, R., Blum, W. E. H., Salnjikov, E., Saparov, A., Pachikin, K., Rombke, J., Manton, M., Angelstam, P., Hennings, V. and Poulton, P. R. 2021. Agricultural Landscapes: History, Status and Challenges. in: Mueller, L., Sychev, V. G., Dronin, N. M. and Eulenstein, F. (ed.) Exploring and Optimizing Agricultural Landscapes. Innovations in Landscape Research Springer.

Ecology and distribution of cabbage stem flea beetle and its parasitoids in UK winter oilseed rape crops : steps towards Integrated Pest Management

F - Theses
Ortega-Ramos, P. 2021. Ecology and distribution of cabbage stem flea beetle and its parasitoids in UK winter oilseed rape crops : steps towards Integrated Pest Management. F - Theses

Elucidating the role of the RHT-1 protein in regulation of gibberellin signalling in the aleurone of wheat

F - Theses
Sokolowska, P. 2021. Elucidating the role of the RHT-1 protein in regulation of gibberellin signalling in the aleurone of wheat. F - Theses

How have smallholder farmers used digital extension tools? Developer and user voices from Sub-Saharan Africa, South Asia and Southeast Asia

A - Papers appearing in refereed journals
Coggins, S., McCampbell, M., Sharma, A., Sharma, R., Haefele, S. M., Karki, E., Hetherington, J., Smith, J. and Brown, B. 2021. How have smallholder farmers used digital extension tools? Developer and user voices from Sub-Saharan Africa, South Asia and Southeast Asia. Global Food Security. 32 (March), p. 100577. https://doi.org/10.1016/j.gfs.2021.100577

Editorial: Advancements in the Understanding of Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments

A - Papers appearing in refereed journals
Taketani, R., Dini-Andreote, F., Beier, S. and Fernandez, C. 2021. Editorial: Advancements in the Understanding of Anthropogenic Impacts on the Microbial Ecology and Function of Aquatic Environments. Frontiers in Microbiology. 12, p. 820697. https://doi.org/10.3389/fmicb.2021.820697

Data describing cattle performance and feed characteristics to calculate enteric methane emissions in smallholder livestock systems in Bomet County, Kenya

A - Papers appearing in refereed journals
Ndung'u, P. W., Kirui, P., Takahashi, T., Du Toit, C. J. L., Merbold, L. and Goopy, J.P. 2021. Data describing cattle performance and feed characteristics to calculate enteric methane emissions in smallholder livestock systems in Bomet County, Kenya. Data in Brief. 39, p. 107673. https://doi.org/10.1016/j.dib.2021.107673

Sirius crop model

M - Agricultural models
Semenov, M. A. 2021. Sirius crop model. Zenodo. https://doi.org/10.5281/zenodo.4572624

RNAi targets in Agricultural Pest Insects: Advancements, knowledge gaps, and IPM

A - Papers appearing in refereed journals
Willow, J., Taning, C. N. T., Cook, S. M., Sulg, S., Silva, A. I., Smagghe, G. and Veromann, E. 2021. RNAi targets in Agricultural Pest Insects: Advancements, knowledge gaps, and IPM. Frontiers in Agronomy. 3, p. 794312. https://doi.org/10.3389/fagro.2021.794312

LARS-WG stochastic weather generator

M - Agricultural models
Semenov, M. A. 2021. LARS-WG stochastic weather generator. Zenodo. https://doi.org/10.5281/zenodo.4572752

Comparison of two water measurement systems for feedlot beef cattle

A - Papers appearing in refereed journals
Palhares, J. C. P., Morelli, M., Novelli, T. I., Meo-Filho, P. and Hisatugu, M. T. 2021. Comparison of two water measurement systems for feedlot beef cattle. Ambiente & Agua - an interdisciplinary journal of applied science. 16 (4). https://doi.org/10.4136/ambi-agua.2729

Daisychain Search and Interactive Visualisation of Homologs in Genome Assemblies

A - Papers appearing in refereed journals
Schliebs, O., Chan, C-K. K., Bayer, P. E., Petereit, J., Singh, A., Hassani-Pak, K., Batley, J. and Edwards, D. 2021. Daisychain Search and Interactive Visualisation of Homologs in Genome Assemblies. Agronomy. 11 (12), p. 2587. https://doi.org/10.3390/agronomy11122587

Effectiveness of using representative subsets of global climate models in future crop yield projections.

A - Papers appearing in refereed journals
Qian, B., Jing, Q., Cannon, A. J., Smith, W., Grant, B., Semenov, M. A., Xu, Y. and Ma, D. 2021. Effectiveness of using representative subsets of global climate models in future crop yield projections. Scientific Reports. 11, p. 20565. https://doi.org/10.1038/s41598-021-99378-7

A Route Map for Successful Applications of Geographically Weighted Regression

A - Papers appearing in refereed journals
Comber, A., Brunsdon, C., Charlton, M., Dong, G., Harris, R., Lu, B., Lu, Y., Murakami, D., Nakaya, T., Wang, Y. and Harris, P. 2021. A Route Map for Successful Applications of Geographically Weighted Regression. Geographical Analysis . https://doi.org/10.1111/gean.12316

The occurrence of herbicide-resistant Avena fatua (wild oats) populations to ACCase-inhibiting herbicides in Ireland

A - Papers appearing in refereed journals
Byrne, R., Vijaya Bhaskar, A. V., Spink, J., Freckleton, R., Neve, P. and Barth, S. 2021. The occurrence of herbicide-resistant Avena fatua (wild oats) populations to ACCase-inhibiting herbicides in Ireland. Irish Journal of Agricultural and Food Research. pp. 1-6. https://doi.org/10.15212/ijafr-2020-0127

Integration of environment and nutrition in life cycle assessment of food items: opportunities and challenges

D1 - Technical reports: non-confidential
McLaren, S., Berardy, A., Henderson, A., Holden, N., Huppertz, T., Jolliet, O., Renouf, M., Rugani, B., Saarinen, M., Van der Pols, J., Vazquez-Rowe, I., Anton Vallejo, A., Bianchi, M., Chaudhary, A., Chen, C., Cooreman-Algoed, M., Dong, H., Grant, T., Green, A., Hallström, E., Minh Hoang, H., Leip, A., Lynch, J., McAuliffe, G., Ridoutt, B., Saget, S., Scherer, L., Tuomisto, H., Tyedmers, P. and Van Zanten, H. 2021. Integration of environment and nutrition in life cycle assessment of food items: opportunities and challenges. Rome, Italy Food and Agriculture Organization of the United Nations - FAO. https://doi.org/10.4060/cb8054en

Effects of Afforestation on Plant Diversity and Soil Quality in Semiarid SE Spain

A - Papers appearing in refereed journals
Segura, C., Jimenez, M. N., Fernandez-Ondono, E. and Navarro, F. B. 2021. Effects of Afforestation on Plant Diversity and Soil Quality in Semiarid SE Spain. Forests. 12 (12), p. 1730. https://doi.org/10.3390/f12121730

On pedagogy of a Soil Science Centre for Doctoral Training

A - Papers appearing in refereed journals
Haygarth, P. M., Lawrenson, O., Mezeli, M., Sayer, E. J., McCloskey, C. S., Evans, D. L., Kirk, G. J. D., Tye, A. M., Chadwick, D. R., McGrath, S. P., Mooney, S. J., Paterson, E., Robinson, D. A. and Jones, D. J. 2021. On pedagogy of a Soil Science Centre for Doctoral Training. European Journal of Soil Science. 72 (6), pp. 2320-2329. https://doi.org/10.1111/ejss.13184

Mechanistic and genetic basis of single-strand templated repair at Cas12a-induced DNA breaks in Chlamydomonas reinhardtii

A - Papers appearing in refereed journals
Ferenczi, A., Chew, Y. P., Kroll, E., Von Koppenfels, C., Hudson, A. and Molnar, A. 2021. Mechanistic and genetic basis of single-strand templated repair at Cas12a-induced DNA breaks in Chlamydomonas reinhardtii. Nature Communications. 12 (6751). https://doi.org/0.1038/s41467-021-27004-12NATURECOMMUNICATIONS|(2021)12:6751|https://doi.org/10.1038/s41467-021-27004-1

Laboratory phenomics predicts field performance and identifies superior indica haplotypes for early seedling vigour in dry direct-seeded rice

A - Papers appearing in refereed journals
Menard, G. N., Sandhu, N., Anderson, D., Catolos, M., Hassall, K. L., Eastmond, P. J., Kumar, A. and Kurup, S. 2021. Laboratory phenomics predicts field performance and identifies superior indica haplotypes for early seedling vigour in dry direct-seeded rice. Genomics. 113 (6), pp. 4227-4236. https://doi.org/10.1016/j.ygeno.2021.11.006

Mapping the potential for Payments for Ecosystem Services schemes to improve water quality in agricultural catchments: A multi-criteria approach based on the supply and demand concept

A - Papers appearing in refereed journals
Roberts, W., Couldrick, L. B., Williams, G., Robins, D. and Cooper, D. 2021. Mapping the potential for Payments for Ecosystem Services schemes to improve water quality in agricultural catchments: A multi-criteria approach based on the supply and demand concept. Water Research. 206, p. 117693. https://doi.org/10.1016/j.watres.2021.117693

Dissecting Disease-Suppressive Rhizosphere Microbiomes by Functional Amplicon Sequencing and 10x Metagenomics

A - Papers appearing in refereed journals
Tracanna, V., Ossowicki, A., Petrus, M. L. C., Oversuin, S., Terlouw, B. R., Lund, G., Robinson, S. L., Warris, S., Schijlen, E. G. W. M., Van Wezel, G. P., Raaijmakers, J. M., Garbeva, P. and Medema, M. H. 2021. Dissecting Disease-Suppressive Rhizosphere Microbiomes by Functional Amplicon Sequencing and 10x Metagenomics. mSystems. 6 (3), pp. e01116-20. https://doi.org/10.1128/mSystems.01116-20

Revisiting strategies to incorporate gender-responsiveness into maize breeding in southern Africa

A - Papers appearing in refereed journals
Cairns, J. E., Baudron, F., Hassall, K. L., Ndhlela, T., Nyagumbo, I., McGrath, S. P. and Haefele, S. M. 2021. Revisiting strategies to incorporate gender-responsiveness into maize breeding in southern Africa. Outlook on Agriculture. 51 (2), pp. 178-182. https://doi.org/10.1177/00307270211045410

High-quality, haplotype-phased de novo assembly of the highly heterozygous fig genome, a major genetic resource for fig breeding

C1 - Edited contributions to conferences/learned societies
Usai, G., Mascagni, F., Giordani, T., Vangelisti, A., Bosi, E., Zuccolo, A., Ceccarelli, M., King, R., Hassani-Pak, K., Solorzano, L. S., Cavallini, A. and Natali, L. 2021. High-quality, haplotype-phased de novo assembly of the highly heterozygous fig genome, a major genetic resource for fig breeding. International Society of Horticultural Science (ISHS). https://doi.org/10.17660/ActaHortic.2021.1310.4

Dynamic role of grasslands as sources of soil-dwelling insect pests: new insights from in silico experiments for pest management strategies

A - Papers appearing in refereed journals
Poggi, S., Sergent, M., Mammeri, Y., Plantegenest, M., Le Cointe, R. and Bourhis, Y. 2021. Dynamic role of grasslands as sources of soil-dwelling insect pests: new insights from in silico experiments for pest management strategies. Ecological Modelling. 440 (15 Jan), p. 109378. https://doi.org/10.1016/j.ecolmodel.2020.109378

An Innate Preference of Bumblebees for Volatile Organic Compounds Emitted by Phaseolus vulgaris Plants Infected With Three Different Viruses

A - Papers appearing in refereed journals
Mhlanga, N. M., Murphy, A. M., Wamonje, F. O., Cunniffe, N. J., Caulfield, J. C., Glover, B. J. and Carr, J. P. 2021. An Innate Preference of Bumblebees for Volatile Organic Compounds Emitted by Phaseolus vulgaris Plants Infected With Three Different Viruses. Frontiers in Ecology and Evolution. 9, p. 626851. https://doi.org/10.3389/fevo.2021.626851

RIN4 homologs from important crop species differentially regulate the Arabidopsis NB-LRR immune receptor, RPS2

A - Papers appearing in refereed journals
Alam, M., Tahir, J., Siddiqui, A., Magzoub, M., Shahzad-ul-Hussan, S., Mackey, D. and Afzal, J. 2021. RIN4 homologs from important crop species differentially regulate the Arabidopsis NB-LRR immune receptor, RPS2. Plant Cell Reports. 40 (12), pp. 2341-2356. https://doi.org/10.1007/s00299-021-02771-9

Evaluating the Effects of Minimal Risk Natural Products for Control of the Tick, Ixodes scapularis (Acari: Ixodidae)

A - Papers appearing in refereed journals
Dyer, M. C., Requintina, M. D., Berger, K., Puggioni, G. and Mather, T. N. 2021. Evaluating the Effects of Minimal Risk Natural Products for Control of the Tick, Ixodes scapularis (Acari: Ixodidae). Journal of Medical Entomology. 58 (1), pp. 390-397. https://doi.org/10.1093/jme/tjaa188

PAL1 gene of the phenylpropanoid pathway increases resistance to the Cassava brown streak virus in cassava

A - Papers appearing in refereed journals
Kavil, S, Otti, G., Bouvaine, S., Armitage, A. and Maruthi, M. N. 2021. PAL1 gene of the phenylpropanoid pathway increases resistance to the Cassava brown streak virus in cassava. Virology Journal. 18, p. 184. https://doi.org/10.1186/s12985-021-01649-2

Evaluation of APSIM-wheat to simulate the response of yield and grain protein content to nitrogen application on an Andosol in Japan

A - Papers appearing in refereed journals
De Silva, S. H. N. P., Takahashi, T. and Okada, K. 2021. Evaluation of APSIM-wheat to simulate the response of yield and grain protein content to nitrogen application on an Andosol in Japan. Plant production science. 24 (4), pp. 454-465. https://doi.org/10.1080/1343943X.2021.1883989

Impact of the colonization of Leifsonia xyli subsp. xyli in a susceptible sugarcane genotype on water status and physiological traits

A - Papers appearing in refereed journals
Garcia, F. H. S., Da Silva Barros, T., Coelho, R. D., Laborde, M. C. F., Azevedo, R. A., Lyra, D. H. and Kluge, R. A. 2021. Impact of the colonization of Leifsonia xyli subsp. xyli in a susceptible sugarcane genotype on water status and physiological traits. European Journal of Plant Pathology. 159 (1), pp. 839-849. https://doi.org/10.1007/s10658-021-02209-8

Contrasting Estuarine Processing of Dissolved Organic Matter Derived From Natural and Human-Impacted Landscapes

A - Papers appearing in refereed journals
Garcia-Martin, E. E., Sanders, R., Evans, C. D., Kitidis, V., Lapworth, D. J., Rees, A. P., Spears, B. M., Tye, A., Williamson, J. L., Balfour, C., Best, M., Bowes, M., Breimann, S., Brown, I. J., Burden, A., Callaghan, N., Felgate, S. L., Fishwick, J., Fraser, M., Gibb, S. W., Gilbert, P. J., Godsell, N., Gomez-Castillo, A. P., Hargreaves, G., Jones, O., Kennedy, P., Lichtschlag, A., Martin, A., May, R., Mawji, E., Mounteney, I., Nightingale, P., Pierpoint, W. S., Olszewska, J. P., Painter, S. C., Pearce, C. R., Pereira, M. G., Peel, K., Pickard, A., Stephens, J. A., Stinchcombe, M., Williams, P., Woodward, E. M. S., Yarrow, D. and Mayor, D. J. 2021. Contrasting Estuarine Processing of Dissolved Organic Matter Derived From Natural and Human-Impacted Landscapes. Global Biogeochemical Cycles. 35 (10), p. e2021GB007023. https://doi.org/10.1029/2021GB007023

Air–sea exchange of acetone, acetaldehyde, DMS and isoprene at a UK coastal site

A - Papers appearing in refereed journals
Phillips, D. P., Hopkins, F. E., Bell, T. G., Liss, P. S., Nightingale, P., Reeves, C. E., Wohl, C. and Yang, A. M. 2021. Air–sea exchange of acetone, acetaldehyde, DMS and isoprene at a UK coastal site. Atmospheric Chemistry And Physics. 21, p. 10111–10132. https://doi.org/10.5194/acp-21-10111-2021

Landscape controls on riverine export of dissolved organic carbon from Great Britain

A - Papers appearing in refereed journals
Williamson, J. L., Tye, A., Lapworth, D. J., Monteith, D., Sanders, R., Mayor, D. J., Barry, C., Bowes, M., Bowes, M., Burden, A., Callaghan, N., Farr, G., Felgate, S., Fitch, A., Gibb, S., Gilbert, P., Hargreaves, G., Keenan, P., Kitidis, V., Juergens, M., Martin, A., Mounteney, I., Nightingale, P., Pereira, M. G., Olszewska, J., Pickard, A., Rees, A. P., Spears, B., Stinchcombe, M., White, D., Williams, P., Worral, F. and Evans, C. 2021. Landscape controls on riverine export of dissolved organic carbon from Great Britain. Biogeochemistry. https://doi.org/10.1007/s10533-021-00762-2

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