Rothamsted Research

TitleRothamsted Research
TypeInstitute

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Spectroscopic analysis of diversity of arabinoxylan structures in endosperm cell walls of wheat cultivars (Triticum aestivum) in the HEALTHGRAIN diversity collection

A - Papers appearing in refereed journals
Toole, G. A., Le Gall, G., Colquhoun, I. J., Johnson, P., Bedo, Z., Saulnier, L., Shewry, P. R. and Mills, E. N. C. 2011. Spectroscopic analysis of diversity of arabinoxylan structures in endosperm cell walls of wheat cultivars (Triticum aestivum) in the HEALTHGRAIN diversity collection. Journal of Agricultural and Food Chemistry. 59, pp. 7075-7082. https://doi.org/10.1021/jf201095m

The relationship between direct soil nitrous oxide emissions and nitrogen fertiliser rate to winter cereals in England

C2 - Non-edited contributions to conferences
Smith, K. E., Cardenas, L. M., Thorman, R. E., Scholefield, D., Chadwick, D. R., Butler, M., Donovan, N., Bennett, G., Collis, H. R., Kingston, H. and Chambers, B. J. 2011. The relationship between direct soil nitrous oxide emissions and nitrogen fertiliser rate to winter cereals in England. Abstracts Theo Murphy International Scientific Meeting on Nitrous Oxide, the Forgotten Greenhouse Gas, Chicheley, 23-24 .

Effects of nitrogen and sulfur nutrition on grain composition and properties of wheat and related cereals

B - Book chapters etc edited externally
Shewry, P. R. 2011. Effects of nitrogen and sulfur nutrition on grain composition and properties of wheat and related cereals. in: Hawkesford, M. J. and Barraclough, P. B. (ed.) Molecular and physiological basis of nutrient use efficiency in crops John Wiley & Sons Chichester, West Sussex. pp. 103-120

A review of quantitative tools for assessing the diffuse pollution response to farmer adaptations and mitigation methods under climate change

A - Papers appearing in refereed journals
Shepherd, A., Wu, L., Chadwick, D. R. and Bol, R. 2011. A review of quantitative tools for assessing the diffuse pollution response to farmer adaptations and mitigation methods under climate change. Advances in Agronomy. 112, pp. 1-54. https://doi.org/10.1016/B978-0-12-385538-1.00001-9

Candida northwykensis sp. nov., a novel yeast isolated from the gut of the click beetle Melanotus villosus

A - Papers appearing in refereed journals
Rao Ravella, S., Donovan, N., James, S. A., Shivaji, S., Arunasri, K., Bond, C. J., Roberts, I. N. and Hobbs, P. J. 2011. Candida northwykensis sp. nov., a novel yeast isolated from the gut of the click beetle Melanotus villosus. Current Microbiology. 63, pp. 115-120. https://doi.org/10.1007/s00284-011-9952-y

Gibberellin control of stamen development: a fertile field

A - Papers appearing in refereed journals
Plackett, A. R. G., Thomas, S. G., Wilson, Z. A. and Hedden, P. 2011. Gibberellin control of stamen development: a fertile field. Trends in Plant Science. 16, pp. 568-578. https://doi.org/10.1016/j.tplants.2011.06.007

The aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron and arsenic

A - Papers appearing in refereed journals
Mitani-Ueno, N., Yamaji, N., Zhao, F-J. and Ma, J. F. 2011. The aromatic/arginine selectivity filter of NIP aquaporins plays a critical role in substrate selectivity for silicon, boron and arsenic. Journal of Experimental Botany. 62, pp. 4391-4398. https://doi.org/10.1093/jxb/err158

Disease control on UK winter oilseed rape contributes to climate change mitigation

C2 - Non-edited contributions to conferences
Mahmuti, M., West, J. S., Watts, J., Gladders, P., Hughes, D. J. and Fitt, B. D. L. 2011. Disease control on UK winter oilseed rape contributes to climate change mitigation. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1330-1333

Profiling of intact wheat arabinoxylans by spectroscopy

G - Articles in popular magazines and other technical publications
Le Gall, G., Shewry, P. R., Mills, E. N. C. and Toole, G. A. 2011. Profiling of intact wheat arabinoxylans by spectroscopy. New Food. 14 (4), pp. 15-20.

Isotopomer analysis of soil derived N2O - comparative measurements using QCLAS and IRMS techniques

C2 - Non-edited contributions to conferences
Koster, J. R., Well, R., Manninen, A., Bol, R., Dittert, K., Emmenegger, L., Tuzson, B., Cardenas, L. M., Muhling, K. H. and Mohn, J. 2011. Isotopomer analysis of soil derived N2O - comparative measurements using QCLAS and IRMS techniques. European Geosciences Union (EGU).

Effects of disease control by fungicides on greenhouse gas emissions by UK arable crop production

A - Papers appearing in refereed journals
Hughes, D. J., West, J. S., Atkins, S. D., Gladders, P., Jeger, M. J. and Fitt, B. D. L. 2011. Effects of disease control by fungicides on greenhouse gas emissions by UK arable crop production. Pest Management Science. 67 (9), pp. 1082-1092. https://doi.org/10.1002/ps.2151

Effects of Leptosphaeria maculans race structure and fitness cost of virulence on management of phoma cell canker in oilseed rape

C2 - Non-edited contributions to conferences
Huang, Y-J., Balesdent, M., Van De Wouw, A., Stonard, J., Evans, N., West, J. S., Rouxel, T. and Fitt, B. D. L. 2011. Effects of Leptosphaeria maculans race structure and fitness cost of virulence on management of phoma cell canker in oilseed rape. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1181-1184

An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations

A - Papers appearing in refereed journals
Hofinger, B. J., Russell, J. R., Bass, C. G., Baldwin, T., Dos Reis, M., Hedley, P. E., Li, Y., Macaulay, M., Waugh, R., Hammond-Kosack, K. E. and Kanyuka, K. 2011. An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20 (17), pp. 3653-3668. https://doi.org/10.1111/j.1365-294X.2011.05201.x

The North Wyke Farm Platform: an opportunity for determining pathogen survival and transfers of pathogenic species from whole farm livestock systems

C2 - Non-edited contributions to conferences
Hodgson, C. J., Murray, P. J. and Hatch, D. J. 2011. The North Wyke Farm Platform: an opportunity for determining pathogen survival and transfers of pathogenic species from whole farm livestock systems. Abstracts Faecal Indicators: Problem or Solution? (FIPS 2011), Edinburgh, 6-8 June 2011 .

Microbial losses to water from 'cracking clay' grassland soils under contrasting manure management strategies

C2 - Non-edited contributions to conferences
Hodgson, C. J., Bulmer, N., Murray, R., Stone, A. C., Misselbrook, T. H., Chadwick, D. R., Sagoo, L., Williams, J. and Chambers, B. 2011. Microbial losses to water from 'cracking clay' grassland soils under contrasting manure management strategies. Abstracts Faecal Indicators: Problem or Solution? (FIPS 2011), Edinburgh, 6-8 June 2011 .

An overview of nutrient use efficiency and strategies for crop improvement

B - Book chapters etc edited externally
Hawkesford, M. J. 2011. An overview of nutrient use efficiency and strategies for crop improvement. in: Hawkesford, M. J. and Barraclough, P. B. (ed.) Molecular and physiological basis of nutrient use in crops John Wiley & Sons Chichester, West Sussex. pp. 5-19

Molecular and physiological basis of nutrient use efficiency in crops

E - Books edited/written by staff member, alone/with others
Hawkesford, M. J. and Barraclough, P. B. 2011. Molecular and physiological basis of nutrient use efficiency in crops. John Wiley & Sons Chichester, West Sussex.

The North Wyke Farm Platform: a UK national capability for agri-environmental research

C1 - Edited contributions to conferences/learned societies
Hatch, D. J., Murray, P. J., Orr, R. J. and Griffith, B. A. 2011. The North Wyke Farm Platform: a UK national capability for agri-environmental research. Agricultural Ecology Research: its Role in Delivering Sustainable Farm Systems. Aspects of Applied Biology 109 . pp. 115-118

Review of the evidence base for the status and change of soil carbon below 15cm from the soil surface in England and Wales (Report on Sub-project 3 of DEFRA Project SP1106)

D1 - Technical reports: non-confidential
Gregory, A. S., Whitmore, A. P., Kirk, G. J. D., Rawlins, B. G., Ritz, K. and Wallace, P. 2011. Review of the evidence base for the status and change of soil carbon below 15cm from the soil surface in England and Wales (Report on Sub-project 3 of DEFRA Project SP1106). Department for Environment, Food and Rural Affairs (DEFRA).

Impacts of climate change on phoma stem canker and light leaf spot on UK winter oilseed rape

C2 - Non-edited contributions to conferences
Fitt, B. D. L., Evans, N., Huang, Y-J., West, J. S. and Gladders, P. 2011. Impacts of climate change on phoma stem canker and light leaf spot on UK winter oilseed rape. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1226-1229

Metagenomic comparison of direct and indirect soil DNA extraction approaches

A - Papers appearing in refereed journals
Delmont, T. O., Robe, P., Clark, I. M., Simonet, P. and Vogel, T. M. 2011. Metagenomic comparison of direct and indirect soil DNA extraction approaches. Journal of Microbiological Methods. 86 (3), pp. 397-400. https://doi.org/10.1016/j.mimet.2011.06.013

Growth arrest by trehalose-6-phosphate: an astonishing case of primary metabolite control over growth by way of the SnRK1 signaling pathway

A - Papers appearing in refereed journals
Delatte, T. L., Sedijani, P., Kondou, Y., Matsui, M., De Jong, G. J., Somsen, G. W., Wiese-Klinkenberg, A., Primavesi, L. F., Paul, M. J. and Schluepmann, H. 2011. Growth arrest by trehalose-6-phosphate: an astonishing case of primary metabolite control over growth by way of the SnRK1 signaling pathway. Plant Physiology. 157 (1), pp. 160-174. https://doi.org/10.1104/pp.111.180422

Water supply and not nitrate concentration determines primary root growth in Arabidopsis

A - Papers appearing in refereed journals
Chapman, N., Whalley, W. R., Lindsey, K. and Miller, A. J. 2011. Water supply and not nitrate concentration determines primary root growth in Arabidopsis. Plant, Cell and Environment. 34 (10), pp. 1630-1638. https://doi.org/10.1111/j.1365-3040.2011.02358.x

Use of the Taguchi methodology to rank the importance of factors affecting emissions of N2O from incubated agricultural soils

C2 - Non-edited contributions to conferences
Cardenas, L. M., Garcia-Marco, S., Rao Ravella, S., Chadwick, D. R., Hobbs, P. J., Gregory, A. S. and Vallejo, A. 2011. Use of the Taguchi methodology to rank the importance of factors affecting emissions of N2O from incubated agricultural soils. European Geosciences Union (EGU).

Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (oilseed rape) stops asexual but not sexual sporulation

C2 - Non-edited contributions to conferences
Boys, E. F., Roques, S., West, J. S., Werner, C. P., King, G. J., Dyer, P. S., Hughes, D. J. and Fitt, B. D. L. 2011. Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (oilseed rape) stops asexual but not sexual sporulation. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 .

Wetland ecosystems (book review)

G - Articles in popular magazines and other technical publications
Blackwell, M. S. A. 2011. Wetland ecosystems (book review). Journal of Environmental Quality. 40, p. 1028. https://doi.org/10.2134/jeq2011.0002br

13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation

A - Papers appearing in refereed journals
Beste, D. J. V., Bonde, B., Hawkins, N. D., Ward, J. L., Beale, M. H., Noack, S., Noh, K., Kruger, N. J., Ratcliffe, R. G. and Mcfadden, J. 2011. 13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation. PLOS Pathogens. 7, p. e1002091 (18pp). https://doi.org/10.1371/journal.ppat.1002091

Drought stress, effect on soil mechanical impedance and root (crop) growth

G - Articles in popular magazines and other technical publications
Whalley, W. R. and Clark, L. J. 2011. Drought stress, effect on soil mechanical impedance and root (crop) growth.

Crop emergence, the impact of mechanical impedance

B - Book chapters etc edited externally
Whalley, W. R. and Finch-Savage, W. E. 2011. Crop emergence, the impact of mechanical impedance. in: Glinski, J., Lipiec, J. and Horabik, J. (ed.) Encyclopedia of agrophysics Springer, Dordrecht. pp. 163-167

The impact of climate change on crop diseases with a focus on diseases of wheat and oilseed rape (colza-canola)

C2 - Non-edited contributions to conferences
West, J. S. 2011. The impact of climate change on crop diseases with a focus on diseases of wheat and oilseed rape (colza-canola). Abstracts 2nd Congreso Argentino de Fitopatologia, Mar del Plata, 1-3 June 2011 . pp. 11-13

Atmospheric ammonia and particulate ammonium from agricultural sources in the North China Plain

A - Papers appearing in refereed journals
Shen, J., Liu, X., Zhang, Y., Fangmeier, A., Goulding, K. W. T. and Zhang, F. 2011. Atmospheric ammonia and particulate ammonium from agricultural sources in the North China Plain. Atmospheric Environment. 45, pp. 5033-5041. https://doi.org/10.1016/j.atmosenv.2011.02.031

Discrimination of Australian soil horizons and classes from their visible-near infrared spectra

A - Papers appearing in refereed journals
Viscarra Rossel, R. A. and Webster, R. 2011. Discrimination of Australian soil horizons and classes from their visible-near infrared spectra. European Journal of Soil Science. 62 (4), pp. 637-647. https://doi.org/10.1111/j.1365-2389.2011.01356.x

Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR Corrigendum

A - Papers appearing in refereed journals
Rogers, S. L., Atkins, S. D. and West, J. S. 2011. Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR Corrigendum . Plant Pathology. 60 (4), p. 800. https://doi.org/10.1111/j.1365-3059.2011.02447.x

Pyrethroid resistance in the tomato red spider mite, Tetranychus evansi, is associated with mutation of the para- type sodium channel

A - Papers appearing in refereed journals
Nyoni, B. N., Gorman, K. J., Mzilahowa, T., Williamson, M. S., Navajas, M., Field, L. M. and Bass, C. 2011. Pyrethroid resistance in the tomato red spider mite, Tetranychus evansi, is associated with mutation of the para- type sodium channel. Pest Management Science. 67 (8), pp. 891-897. https://doi.org/10.1002/ps.2145

Molecular modelling of the emergence of azole resistance in Mycosphaerella graminicola

A - Papers appearing in refereed journals
Mullins, J. G. L., Parker, J. E., Cools, H. J., Togawa, R. C., Lucas, J. A., Fraaije, B. A., Kelly, D. E. and Kelly, S. L. 2011. Molecular modelling of the emergence of azole resistance in Mycosphaerella graminicola. PLOS ONE. 6, p. e20973. https://doi.org/10.1371/journal.pone.0020973

Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola

A - Papers appearing in refereed journals
Motteram, J., Lovegrove, A., Pirie, E. J., Marsh, J., Devonshire, J., Van De Meene, A., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola. Molecular Microbiology. 81 (2), pp. 415-433. https://doi.org/10.1111/j.1365-2958.2011.07701.x

Effects of crop plants on abundance of Pochonia chlamydosporia and other fungal parasites of root-knot and potato cyst nematodes

A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Esteves, I., Powers, S. J. and Kerry, B. R. 2011. Effects of crop plants on abundance of Pochonia chlamydosporia and other fungal parasites of root-knot and potato cyst nematodes. Annals of Applied Biology. 159 (1), pp. 118-129. https://doi.org/10.1111/j.1744-7348.2011.00479.x

Pochonia chlamydosporia: advances and challenges to improve its performance as a biological control agent of sedentary endo-parasitic nematodes

C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Esteves, I., Finetti-Sialer, M., Hirsch, P. R., Ward, E., Devonshire, J., Hidalgo, L. and Kerry, B. R. 2011. Pochonia chlamydosporia: advances and challenges to improve its performance as a biological control agent of sedentary endo-parasitic nematodes. Abstracts 50th Annual Meeting of the Society of Nematologists, Corvallis, 17-20 July 2011 . pp. 105-106

Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control

C1 - Edited contributions to conferences/learned societies
Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2011. Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control.

WIBL: Workbench for Integrative Biological Learning

A - Papers appearing in refereed journals
Lesk, V., Taubert, J., Rawlings, C. J., Dunbar, S. and Muggleton, S. 2011. WIBL: Workbench for Integrative Biological Learning. Journal of Integrative Bioinformatics. 8, p. 156 (9pp). https://doi.org/10.2390/biecoll-jib-2011-156

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