Rothamsted Research

TitleRothamsted Research
TypeInstitute

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Enhancing food security amid climate change through rewilding and de novo domestication

A - Papers appearing in refereed journals
Hawkesford, M. J. 2024. Enhancing food security amid climate change through rewilding and de novo domestication. Frontiers in Science. 2, p. 1531043. https://doi.org/10.3389/fsci.2024.1531043

Management choices in cereal production: Lessons from the Broadbalk Long-term trial

A - Papers appearing in refereed journals
Poulton, P. R., Powlson, D. S., Gregory, A. S., Glendining, M. J., White, R. P., Clark, S. J., Wilmer, W. S., Macdonald, A. J. and Johnston, A. E. 2024. Management choices in cereal production: Lessons from the Broadbalk Long-term trial. Proceedings of the International Fertiliser Society. 891, pp. 1-60. https://doi.org/10.23637/rothamstedlong-term-experiments-guide-2018

Bugs and bytes: Entomological biomonitoring through the integration of deep learning and molecular analysis for merged community and network analysis

A - Papers appearing in refereed journals
Suresh, M, D., Xin, T., Cook, S. M. and Evans, D.M 2024. Bugs and bytes: Entomological biomonitoring through the integration of deep learning and molecular analysis for merged community and network analysis. Agricultural and Forest Entomology. https://doi.org/10.1111/afe.12667

Geographical Distribution of Atmospheric Nitrogen Deposition in China and Its Response to Emission Control Policy

A - Papers appearing in refereed journals
Wen, Z., Yu, Z., Si, R., Xu, W., Wang, K., Liu, L., Tang, A., Zhang, F., Goulding, K. W. T. and Liu, X. 2024. Geographical Distribution of Atmospheric Nitrogen Deposition in China and Its Response to Emission Control Policy. Chinese Geographical Science. 34 (6), pp. 1017-1031. https://doi.org/10.1007/s11769-024-1471-4

Using dynamic headspace collections for bacterial volatile sampling

D1 - Technical reports: non-confidential
Novakova, B., Caulfield, J. C., Withall, D., Birkett, M. A., Vuts, J. and Thomas, G. 2024. Using dynamic headspace collections for bacterial volatile sampling. https://doi.org/10.17504/protocols.io.kqdg3q4eev25/v1

Trichoderma gets by with a little help from Streptomyces: fungal–bacterial symbiosis in plant growth promotion

A - Papers appearing in refereed journals
Reid, T. E. and Gifford, M. L. 2024. Trichoderma gets by with a little help from Streptomyces: fungal–bacterial symbiosis in plant growth promotion. Journal of Experimental Botany. 75 (22), p. 6893–6897. https://doi.org/10.1093/jxb/erae439

Impacts of arable reforestation on soil carbon and nutrients are dependent upon interactions between soil depth and tree species

A - Papers appearing in refereed journals
Judson, J, Chapman, P, Holden, J. and Galdos, M. 2024. Impacts of arable reforestation on soil carbon and nutrients are dependent upon interactions between soil depth and tree species. Catena. 247 (108465). https://doi.org/10.1016/j.catena.2024.108465

Understanding the mechanisms of host-tissue colonisation by Fusarium graminearum

F - Theses
Armer, V.J. 2024. Understanding the mechanisms of host-tissue colonisation by Fusarium graminearum. F - Theses University of Exeter / Rothamsted Research Protecting Crops and the Environment

Burden of selenium deficiency and cost-effectiveness of selenium agronomic biofortification of staple cereals in Ethiopia

A - Papers appearing in refereed journals
Oumer, A., Joy, E. J. M., Groote, H. D., Broadley, M. and Gashu, D. 2024. Burden of selenium deficiency and cost-effectiveness of selenium agronomic biofortification of staple cereals in Ethiopia. British Journal Of Nutrition. 132 (8), pp. 1110-1122. https://doi.org/10.1017/S0007114524001235

Field trial guidelines for evaluating enhanced efficiency fertilizers

A - Papers appearing in refereed journals
Lyons, S. E., Arnall, D. B., Ashford-Kornburger, D., Brouder, S. M., Christian, E., Dobermann, A., Haefele, S. M., Haegele, J., Helmers, M. J., Jin, V. L., Margenot, A. J., McGrath, J. M., Morgan, K. T., Murrell, T. S., Osmond, D. L., Pelster, D. E., Slaton, N. A., Vadas, P. A., Venterea, R. T., Volenec, J. J. and Wagner-Riddle, C. 2024. Field trial guidelines for evaluating enhanced efficiency fertilizers. Soil Science Society of America Journal. 89 (1), p. e20787. https://doi.org/10.1002/saj2.20787

An open science framework and tools to create reproducible food composition data for use in nutrition

A - Papers appearing in refereed journals
Segovia de la Revilla, L, Codd, T., Joy, E.J.M., Mlambo, L., Grande, F., Rittenschober, D., Moltedo, A., Holmes, B.A. and Ander, E.L. 2024. An open science framework and tools to create reproducible food composition data for use in nutrition. Journal of Food Composition and Analysis - JFCA. 137, p. 106894. https://doi.org/10.1016/j.jfca.2024.106894

Inclusion of oil from transgenic Camelina sativa in feed effectively supplies EPA and DHA to Atlantic salmon (Salmo salar) grown to market size in seawater pens

A - Papers appearing in refereed journals
Tocher, D. R., Sprague, M., Han, L., Sayanova, O. V., Norambuena, F., Napier, J. A. and Betancor, M. B. 2024. Inclusion of oil from transgenic Camelina sativa in feed effectively supplies EPA and DHA to Atlantic salmon (Salmo salar) grown to market size in seawater pens. Food Chemistry. 456, p. 139414. https://doi.org/10.1016/j.foodchem.2024.139414

How Tillage System Affects the Soil Carbon Dioxide Emission and Wheat Plants Physiological State

A - Papers appearing in refereed journals
Sawinska, Z., Radzikowska-Kujawska, D., Blecharczyk, A., Switek, S., Piechota, T., Cieslak, A., Cardenas, L. M., Louro-Lopez, A., Gregory, A. S., Coleman, K. and Lark, R. M. 2024. How Tillage System Affects the Soil Carbon Dioxide Emission and Wheat Plants Physiological State. Agronomy. 14 (10), p. 2220. https://doi.org/10.3390/agronomy14102220

Development and application of a qPCR-based method coupled with spore trapping to monitor airborne pathogens of wheat causing stripe rust, powdery mildew, and Fusarium head blight

A - Papers appearing in refereed journals
A, Wang, Z, Shang, R, Jiang, M, Zhang, J, Wang, H, Li, B, Zhang, H, Tang, F, Xu, X, Hu, W, Liu, J, Fan, Y, Zhou and West, J. S. 2024. Development and application of a qPCR-based method coupled with spore trapping to monitor airborne pathogens of wheat causing stripe rust, powdery mildew, and Fusarium head blight. Plant Disease. https://doi.org/10.1094/PDIS-03-24-0548-SR

Integrating human behaviour and epidemiological modelling: unlocking the remaining challenges

A - Papers appearing in refereed journals
Hill, E. M., Ryan, M., Haw, D., Lynche, M. P., McCabe, R., Milne, A. E., Turner, M. S., Vedhara, K., Zeng, F., Barons, M. J., Nixon, E. J., Parnell, S. and Bolton, K. J. 2024. Integrating human behaviour and epidemiological modelling: unlocking the remaining challenges. Mathematics in Medical and Life Sciences. 1 (1), p. 2429479. https://doi.org/10.1080/29937574.2024.2429479

Advancing mechanistic understanding of cohesive sediment transport: Integrating flume experiments, field measurements, and modelling approaches in a gravel-bed river

A - Papers appearing in refereed journals
Maltauro, R., Stone, M., Collins, A. L. and Krishnappan, B.G. 2024. Advancing mechanistic understanding of cohesive sediment transport: Integrating flume experiments, field measurements, and modelling approaches in a gravel-bed river. Science of the Total Environment. 956 (177301). https://doi.org/10.1016/j.scitotenv.2024.177301

How the Global Burden of Animal Diseases links to the Global Burden of Crop Loss: a food systems perspective

A - Papers appearing in refereed journals
Szyniszewska, A. M., Simpkins, K. M., Thomas, L., Beale, T., Milne, A. E., Brown, M. E., Taylor, B., Oliver, G., Bebber, D. P., Woolman, T., Mahmood, S., Murphy, C., Huntington, B. and Finegold, C. 2024. How the Global Burden of Animal Diseases links to the Global Burden of Crop Loss: a food systems perspective. Scientific and Technical Review. 43, pp. 177-188. https://doi.org/10.20506/rst.43.3530

DGCNN approach links metagenome-derived taxon and functional information providing insight into global soil organic carbon

A - Papers appearing in refereed journals
Gardiner, L., Marshall, M., Reusch, K., Dearden, C., Birmingham, M., Carrieri, A. P., Pyzer-Knapp, E. O., Krishna, R. and Neal, A. L. 2024. DGCNN approach links metagenome-derived taxon and functional information providing insight into global soil organic carbon. NPJ Biofilms Microbiomes. 10, p. 113. https://doi.org/10.1038/s41522-024-00583-9

Validating a cassava production spatial disaggregation model in sub-Saharan Africa

A - Papers appearing in refereed journals
Hassall, K. L., Alonso Chavez, V., Sint, H. M., Helps, J., Abidrabo, P., Okao-Okuja, G., Eboulem, R. G., Amoakon, W. J., Otron, D. H. and Szyniszewska, A. 2024. Validating a cassava production spatial disaggregation model in sub-Saharan Africa. PLOS ONE. https://doi.org/10.1371/journal.pone.0312734

Do expectations that gluten makes you sick lead to gastrointestinal distress?

G - Articles in popular magazines and other technical publications
Brouns, F., Shewry, P. R. and Jonkers, D. 2024. Do expectations that gluten makes you sick lead to gastrointestinal distress? Milling and Grain. 135 (11), pp. 46-53.

Comparing samples of grains and breads: Nutritional Benefits of Ancient Grains and Sourdough

G - Articles in popular magazines and other technical publications
Brouns, F., Shewry, P. R. and Jonkers, D. 2024. Comparing samples of grains and breads: Nutritional Benefits of Ancient Grains and Sourdough. Milling and Grain. 135 (10), pp. 54-56.

Soil organic carbon storage impacts on crop yields in rice-based cropping systems under different long-term fertilisation

A - Papers appearing in refereed journals
Wang, S., Sun, N., Zhang, S., Longdoz, B., Wellens, J., Meersmans, J., Colinet, G., Wu, L. and Xu, M. 2024. Soil organic carbon storage impacts on crop yields in rice-based cropping systems under different long-term fertilisation. European Journal of Agronomy. 161 (November), p. 127357. https://doi.org/10.1016/j.eja.2024.127357

Impact of natural biochar on soil water retention capacity and quinoa plant growth in different soil textures

A - Papers appearing in refereed journals
Daraei, E., Bayat, H. and Gregory, A. S. 2024. Impact of natural biochar on soil water retention capacity and quinoa plant growth in different soil textures. Soil & Tillage Research. 244 (December), p. 106281. https://doi.org/10.1016/j.still.2024.106281

Swarming insects may have finely tuned characteristic Reynolds numbers

A - Papers appearing in refereed journals
Reynolds, A. M. 2024. Swarming insects may have finely tuned characteristic Reynolds numbers. Biomimetics. 9 (11), p. 660. https://doi.org/10.3390/biomimetics9110660

Prey nutrient content is associated with the trophic interactions of spiders and their prey selection under field conditions

A - Papers appearing in refereed journals
Cuff, J. P., Tercel, M. P. T. G., Vaughan, I. P., Drake, L. E., Wilder, S. M., Bell, J. R., Muller, C. T., Wengel, P. O. and Symondson, W. O. C. 2024. Prey nutrient content is associated with the trophic interactions of spiders and their prey selection under field conditions. Oikos. p. e10712. https://doi.org/10.1111/oik.10712

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

A - Papers appearing in refereed journals
Toro, S., Anagnostopoulos, A. V., Bello, S. M., Blumberg, K., Cameron, R., Carmody, L., Diehl, A. D., Dooley, D. M., Duncan, W. D., Fey, P., Gaudet, P., Harris, N. L., Joachimiak, M. P., Kiani, L., Lubiana, T., Munoz-Torres, M. C., O‘Neil, S., Osumi-Sutherland, D., Puig-Barbe, A., Reese, J. T., Reiser, L., Robb, S. M., Ruemping, T., Seager, J., Sid, E., Stefancsik, R., Weber, M., Wood, V., Haendel, M. A. and Mungall, C. J. 2024. Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI). Journal of Biomedical Semantics. 15 (19). https://doi.org/10.1186/s13326-024-00320-3

Unmanaged grasslands are a reservoir of Alternaria and other important fungal species with differing emission patterns

A - Papers appearing in refereed journals
Apangu, G., Frisk, C. A., Petch, G. M., Hanson, M. and Skjoth, C. A. 2024. Unmanaged grasslands are a reservoir of Alternaria and other important fungal species with differing emission patterns. Journal of Environmental Management. 370 (November), p. 122416. https://doi.org/10.1016/j.jenvman.2024.122416

Identifying the Fusarium effector proteases that play a role in pathogenesis in wheat

A - Papers appearing in refereed journals
Srivastava, M., Kroll, E., Darino, M., Smith, D., Urban, M. and Hammond-Kosack, K. E. 2024. Identifying the Fusarium effector proteases that play a role in pathogenesis in wheat. Molecular Plant-Microbe Interactions - MPMI. 37 (5 supplement), p. S1.24. https://doi.org/10.1094/MPMI-37-5-S1.1

Exploring the function of two paralogous F. graminearum effectors reveals an alternative genetic pathway required for virulence on wheat spikes.

A - Papers appearing in refereed journals
Hammond-Kosack, K. E., Rudd, J. J. and Kanja, C. 2024. Exploring the function of two paralogous F. graminearum effectors reveals an alternative genetic pathway required for virulence on wheat spikes. Molecular Plant-Microbe Interactions - MPMI. 37 (5 supplement), p. S1.65. https://doi.org/10.1094/MPMI-37-5-S1.1

A Fusarium graminearum trichothecene mycotoxin facilitates plasmodesmatal crossings by hyphae during wheat infection.

A - Papers appearing in refereed journals
Armer, V., Deeks, M. J. and Hammond-Kosack, K. E. 2024. A Fusarium graminearum trichothecene mycotoxin facilitates plasmodesmatal crossings by hyphae during wheat infection. Molecular Plant-Microbe Interactions - MPMI. 37 (5 supplement), p. S1.138. https://doi.org/10.1094/MPMI-37-5-S1.118

PHI-base - The multi-species Pathogen-Host Interaction Database in 2025

A - Papers appearing in refereed journals
Urban, M., Cuzick, A., Seager, J., Nonavinakere, N., Sahu, J., Sahu, P., Iyer, V. L., Khamari, L., Martinez, M. C. and Hammond-Kosack, K. E. 2024. PHI-base - The multi-species Pathogen-Host Interaction Database in 2025. Nucleic Acids Research. 53 (D1), p. D826–D838. https://doi.org/10.1093/nar/gkae1084

A new species to Europe of East Asian aphid, Longicaudinus corydalisicola (Tao, 1962) (Aphidinae: Macrosiphini), recorded from Britain and Ireland

A - Papers appearing in refereed journals
Greenslade, A. F. C., Lester, L., Pichon, A., Alderson, L. J., Kruger, T., Martin, M., Gizycka, H., Garrett, D., Webb, H., Buchard, C. and Carnegie, M. 2024. A new species to Europe of East Asian aphid, Longicaudinus corydalisicola (Tao, 1962) (Aphidinae: Macrosiphini), recorded from Britain and Ireland. Zootaxa. 5523 (3), p. 396–398. https://doi.org/10.11646/zootaxa.5523.3.8

Exploring the plant and soil mechanisms by which crop rotations benefit farming systems

A - Papers appearing in refereed journals
Malik, A. I., Bell, R., Zang, H., Boitt, G. and Whalley, W. R. 2024. Exploring the plant and soil mechanisms by which crop rotations benefit farming systems. Plant and Soil. https://doi.org/10.1007/s11104-024-06994-z

The River Rother: a long history of change and human interference

B - Book chapters etc edited externally
Foster, I., Boardman, J., Collins, A. L., Copeland-Phillips, R., Evans, J. and Vadher, A. 2024. The River Rother: a long history of change and human interference. in: Boardman, J. and Foster, I. (ed.) The Rother Valley: A short history of a lowland English river catchment and prospects for future management Oxford Oxbow Books, Oxford . pp. 135-159

Haplotype-resolved and near-T2T genome assembly of the African catfish (Clarias gariepinus)

A - Papers appearing in refereed journals
Nguinkal, J.A., Zoclanclounon, A., Brunner, R.M., Chen, Y. and Goldammer, T. 2024. Haplotype-resolved and near-T2T genome assembly of the African catfish (Clarias gariepinus). Scientific Data. 11, p. 1095. https://doi.org/10.1038/s41597-024-03906-9

Species Sensitivity Distribution (SSD) profiles towards λ-cyhalothrin for key ecosystem service provider (ESP) species across five European countries representing different pedoclimatic zones

A - Papers appearing in refereed journals
Blanco-Moreno, J. M., Caballero-Lopez, B., Cook, S. M., Foster, S. P., Frydryszak, D., Laskowski, R., Ortega-Ramos, P., Rasko, M., Reichardt, P., Sousa, J. P., Sowa, G., Sliwinska-Grochot, R. and Winkler, J. 2024. Species Sensitivity Distribution (SSD) profiles towards λ-cyhalothrin for key ecosystem service provider (ESP) species across five European countries representing different pedoclimatic zones. Science of the Total Environment. 954 (1 December), p. 176412. https://doi.org/10.1016/j.scitotenv.2024.176412

An array of Zymoseptoria tritici effectors suppress plant immune responses

A - Papers appearing in refereed journals
Thynne, E., Ali, H., Seong, K., Abukhalaf, M., Guerreiro, M. A., Flores-Nunez, V. M., Hansen, R., Bergues, A., Salman, M. J., Rudd, J. J., Kanyuka, K., Tholey, A., Krasileva, K. V., Kettles, G. J. and Stukenbrock, E. H. 2024. An array of Zymoseptoria tritici effectors suppress plant immune responses. Molecular Plant Pathology. 25 (10), p. e13500. https://doi.org/10.1111/mpp.13500

Gluten and wheat sensitivity; Does the bread type matter?

G - Articles in popular magazines and other technical publications
Brouns, F., Shewry, P. R. and Jonkers, D. 2024. Gluten and wheat sensitivity; Does the bread type matter? Milling and Grain. 135 (10), pp. 48-52.

Phenotyping the nutritional status of crops using proximal and remote sensing techniques

F - Theses
Cudjoe, D. 2024. Phenotyping the nutritional status of crops using proximal and remote sensing techniques. F - Theses Rothamsted Research Sustainable Crops and Soils

Caatinga Microbiome Initiative: disentangling the soil microbiome across areas under desertification and restoration in the Brazilian drylands

A - Papers appearing in refereed journals
Araujo, A. S. F., Medeiros, E. V. D., Costa, D. P. D., Mendes, L. W., Cherubin, M. R., Neto, F. D. A., Beirigo, R. M., Lambais, G. R., Melo, V. M. M., Nobrega, G. G., Barbosa, H. A., Mota, J. C. A., Santana, R. M., Kavamura, V. N., Borges, W. L. and Pereira, A. P. A. 2024. Caatinga Microbiome Initiative: disentangling the soil microbiome across areas under desertification and restoration in the Brazilian drylands. Restoration Ecology. p. e14298. https://doi.org/10.1111/rec.14298

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