Rothamsted Research

TitleRothamsted Research
TypeInstitute

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An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations

A - Papers appearing in refereed journals
Hofinger, B. J., Russell, J. R., Bass, C. G., Baldwin, T., Dos Reis, M., Hedley, P. E., Li, Y., Macaulay, M., Waugh, R., Hammond-Kosack, K. E. and Kanyuka, K. 2011. An exceptionally high nucleotide and haplotype diversity and a signature of positive selection for the eIF4E resistance gene in barley are revealed by allele mining and phylogenetic analyses of natural populations. Molecular Ecology. 20 (17), pp. 3653-3668. https://doi.org/10.1111/j.1365-294X.2011.05201.x

The North Wyke Farm Platform: an opportunity for determining pathogen survival and transfers of pathogenic species from whole farm livestock systems

C2 - Non-edited contributions to conferences
Hodgson, C. J., Murray, P. J. and Hatch, D. J. 2011. The North Wyke Farm Platform: an opportunity for determining pathogen survival and transfers of pathogenic species from whole farm livestock systems. Abstracts Faecal Indicators: Problem or Solution? (FIPS 2011), Edinburgh, 6-8 June 2011 .

Microbial losses to water from 'cracking clay' grassland soils under contrasting manure management strategies

C2 - Non-edited contributions to conferences
Hodgson, C. J., Bulmer, N., Murray, R., Stone, A. C., Misselbrook, T. H., Chadwick, D. R., Sagoo, L., Williams, J. and Chambers, B. 2011. Microbial losses to water from 'cracking clay' grassland soils under contrasting manure management strategies. Abstracts Faecal Indicators: Problem or Solution? (FIPS 2011), Edinburgh, 6-8 June 2011 .

An overview of nutrient use efficiency and strategies for crop improvement

B - Book chapters etc edited externally
Hawkesford, M. J. 2011. An overview of nutrient use efficiency and strategies for crop improvement. in: Hawkesford, M. J. and Barraclough, P. B. (ed.) Molecular and physiological basis of nutrient use in crops John Wiley & Sons Chichester, West Sussex. pp. 5-19

Molecular and physiological basis of nutrient use efficiency in crops

E - Books edited/written by staff member, alone/with others
Hawkesford, M. J. and Barraclough, P. B. 2011. Molecular and physiological basis of nutrient use efficiency in crops. John Wiley & Sons Chichester, West Sussex.

The North Wyke Farm Platform: a UK national capability for agri-environmental research

C1 - Edited contributions to conferences/learned societies
Hatch, D. J., Murray, P. J., Orr, R. J. and Griffith, B. A. 2011. The North Wyke Farm Platform: a UK national capability for agri-environmental research. Agricultural Ecology Research: its Role in Delivering Sustainable Farm Systems. Aspects of Applied Biology 109 . pp. 115-118

Review of the evidence base for the status and change of soil carbon below 15cm from the soil surface in England and Wales (Report on Sub-project 3 of DEFRA Project SP1106)

D1 - Technical reports: non-confidential
Gregory, A. S., Whitmore, A. P., Kirk, G. J. D., Rawlins, B. G., Ritz, K. and Wallace, P. 2011. Review of the evidence base for the status and change of soil carbon below 15cm from the soil surface in England and Wales (Report on Sub-project 3 of DEFRA Project SP1106). Department for Environment, Food and Rural Affairs (DEFRA).

Impacts of climate change on phoma stem canker and light leaf spot on UK winter oilseed rape

C2 - Non-edited contributions to conferences
Fitt, B. D. L., Evans, N., Huang, Y-J., West, J. S. and Gladders, P. 2011. Impacts of climate change on phoma stem canker and light leaf spot on UK winter oilseed rape. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 . pp. 1226-1229

Metagenomic comparison of direct and indirect soil DNA extraction approaches

A - Papers appearing in refereed journals
Delmont, T. O., Robe, P., Clark, I. M., Simonet, P. and Vogel, T. M. 2011. Metagenomic comparison of direct and indirect soil DNA extraction approaches. Journal of Microbiological Methods. 86 (3), pp. 397-400. https://doi.org/10.1016/j.mimet.2011.06.013

Growth arrest by trehalose-6-phosphate: an astonishing case of primary metabolite control over growth by way of the SnRK1 signaling pathway

A - Papers appearing in refereed journals
Delatte, T. L., Sedijani, P., Kondou, Y., Matsui, M., De Jong, G. J., Somsen, G. W., Wiese-Klinkenberg, A., Primavesi, L. F., Paul, M. J. and Schluepmann, H. 2011. Growth arrest by trehalose-6-phosphate: an astonishing case of primary metabolite control over growth by way of the SnRK1 signaling pathway. Plant Physiology. 157 (1), pp. 160-174. https://doi.org/10.1104/pp.111.180422

Water supply and not nitrate concentration determines primary root growth in Arabidopsis

A - Papers appearing in refereed journals
Chapman, N., Whalley, W. R., Lindsey, K. and Miller, A. J. 2011. Water supply and not nitrate concentration determines primary root growth in Arabidopsis. Plant, Cell and Environment. 34 (10), pp. 1630-1638. https://doi.org/10.1111/j.1365-3040.2011.02358.x

Use of the Taguchi methodology to rank the importance of factors affecting emissions of N2O from incubated agricultural soils

C2 - Non-edited contributions to conferences
Cardenas, L. M., Garcia-Marco, S., Rao Ravella, S., Chadwick, D. R., Hobbs, P. J., Gregory, A. S. and Vallejo, A. 2011. Use of the Taguchi methodology to rank the importance of factors affecting emissions of N2O from incubated agricultural soils. European Geosciences Union (EGU).

Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (oilseed rape) stops asexual but not sexual sporulation

C2 - Non-edited contributions to conferences
Boys, E. F., Roques, S., West, J. S., Werner, C. P., King, G. J., Dyer, P. S., Hughes, D. J. and Fitt, B. D. L. 2011. Resistance to Pyrenopeziza brassicae (light leaf spot) in Brassica napus (oilseed rape) stops asexual but not sexual sporulation. Abstracts 13th International Rapeseed Congress, Prague, 5-9 June 2011 .

Wetland ecosystems (book review)

G - Articles in popular magazines and other technical publications
Blackwell, M. S. A. 2011. Wetland ecosystems (book review). Journal of Environmental Quality. 40, p. 1028. https://doi.org/10.2134/jeq2011.0002br

13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation

A - Papers appearing in refereed journals
Beste, D. J. V., Bonde, B., Hawkins, N. D., Ward, J. L., Beale, M. H., Noack, S., Noh, K., Kruger, N. J., Ratcliffe, R. G. and Mcfadden, J. 2011. 13C metabolic flux analysis identifies an unusual route for pyruvate dissimilation in mycobacteria which requires isocitrate lyase and carbon dioxide fixation. PLOS Pathogens. 7, p. e1002091 (18pp). https://doi.org/10.1371/journal.ppat.1002091

Drought stress, effect on soil mechanical impedance and root (crop) growth

G - Articles in popular magazines and other technical publications
Whalley, W. R. and Clark, L. J. 2011. Drought stress, effect on soil mechanical impedance and root (crop) growth.

Crop emergence, the impact of mechanical impedance

B - Book chapters etc edited externally
Whalley, W. R. and Finch-Savage, W. E. 2011. Crop emergence, the impact of mechanical impedance. in: Glinski, J., Lipiec, J. and Horabik, J. (ed.) Encyclopedia of agrophysics Springer, Dordrecht. pp. 163-167

The impact of climate change on crop diseases with a focus on diseases of wheat and oilseed rape (colza-canola)

C2 - Non-edited contributions to conferences
West, J. S. 2011. The impact of climate change on crop diseases with a focus on diseases of wheat and oilseed rape (colza-canola). Abstracts 2nd Congreso Argentino de Fitopatologia, Mar del Plata, 1-3 June 2011 . pp. 11-13

Atmospheric ammonia and particulate ammonium from agricultural sources in the North China Plain

A - Papers appearing in refereed journals
Shen, J., Liu, X., Zhang, Y., Fangmeier, A., Goulding, K. W. T. and Zhang, F. 2011. Atmospheric ammonia and particulate ammonium from agricultural sources in the North China Plain. Atmospheric Environment. 45, pp. 5033-5041. https://doi.org/10.1016/j.atmosenv.2011.02.031

Discrimination of Australian soil horizons and classes from their visible-near infrared spectra

A - Papers appearing in refereed journals
Viscarra Rossel, R. A. and Webster, R. 2011. Discrimination of Australian soil horizons and classes from their visible-near infrared spectra. European Journal of Soil Science. 62 (4), pp. 637-647. https://doi.org/10.1111/j.1365-2389.2011.01356.x

Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR Corrigendum

A - Papers appearing in refereed journals
Rogers, S. L., Atkins, S. D. and West, J. S. 2011. Detection and quantification of airborne inoculum of Sclerotinia sclerotiorum using quantitative PCR Corrigendum . Plant Pathology. 60 (4), p. 800. https://doi.org/10.1111/j.1365-3059.2011.02447.x

Pyrethroid resistance in the tomato red spider mite, Tetranychus evansi, is associated with mutation of the para- type sodium channel

A - Papers appearing in refereed journals
Nyoni, B. N., Gorman, K. J., Mzilahowa, T., Williamson, M. S., Navajas, M., Field, L. M. and Bass, C. 2011. Pyrethroid resistance in the tomato red spider mite, Tetranychus evansi, is associated with mutation of the para- type sodium channel. Pest Management Science. 67 (8), pp. 891-897. https://doi.org/10.1002/ps.2145

Molecular modelling of the emergence of azole resistance in Mycosphaerella graminicola

A - Papers appearing in refereed journals
Mullins, J. G. L., Parker, J. E., Cools, H. J., Togawa, R. C., Lucas, J. A., Fraaije, B. A., Kelly, D. E. and Kelly, S. L. 2011. Molecular modelling of the emergence of azole resistance in Mycosphaerella graminicola. PLOS ONE. 6, p. e20973. https://doi.org/10.1371/journal.pone.0020973

Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola

A - Papers appearing in refereed journals
Motteram, J., Lovegrove, A., Pirie, E. J., Marsh, J., Devonshire, J., Van De Meene, A., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Aberrant protein N- glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola. Molecular Microbiology. 81 (2), pp. 415-433. https://doi.org/10.1111/j.1365-2958.2011.07701.x

Effects of crop plants on abundance of Pochonia chlamydosporia and other fungal parasites of root-knot and potato cyst nematodes

A - Papers appearing in refereed journals
Manzanilla-Lopez, R. H., Esteves, I., Powers, S. J. and Kerry, B. R. 2011. Effects of crop plants on abundance of Pochonia chlamydosporia and other fungal parasites of root-knot and potato cyst nematodes. Annals of Applied Biology - AAB. 159 (1), pp. 118-129. https://doi.org/10.1111/j.1744-7348.2011.00479.x

Pochonia chlamydosporia: advances and challenges to improve its performance as a biological control agent of sedentary endo-parasitic nematodes

C2 - Non-edited contributions to conferences
Manzanilla-Lopez, R. H., Esteves, I., Finetti-Sialer, M., Hirsch, P. R., Ward, E., Devonshire, J., Hidalgo, L. and Kerry, B. R. 2011. Pochonia chlamydosporia: advances and challenges to improve its performance as a biological control agent of sedentary endo-parasitic nematodes. Abstracts 50th Annual Meeting of the Society of Nematologists, Corvallis, 17-20 July 2011 . pp. 105-106

Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control

C1 - Edited contributions to conferences/learned societies
Manzanilla-Lopez, R. H., Clark, I. M., Atkins, S. D., Hirsch, P. R. and Kerry, B. R. 2011. Exploring competitiveness and genetic variation in the nematophagous fungus Pochonia chlamydosporia var. chlamydosporia and its significance for biological control.

WIBL: Workbench for Integrative Biological Learning

A - Papers appearing in refereed journals
Lesk, V., Taubert, J., Rawlings, C. J., Dunbar, S. and Muggleton, S. 2011. WIBL: Workbench for Integrative Biological Learning. Journal of Integrative Bioinformatics. 8, p. 156 (9pp). https://doi.org/10.2390/biecoll-jib-2011-156

Climate change affects winter chill for temperate fruit and nut trees

A - Papers appearing in refereed journals
Luedeling, E., Girvetz, E. H., Semenov, M. A. and Brown, P. H. 2011. Climate change affects winter chill for temperate fruit and nut trees. PLOS ONE. 6, p. e20155 (13pp). https://doi.org/10.1371/journal.pone.0020155

Rapid shift from denitrification to nitrification in soil after biogas residue application as indicated by nitrous oxide isotopomers

A - Papers appearing in refereed journals
Koster, J. R., Cardenas, L. M., Senbayram, M., Bol, R., Well, R., Butler, M., Muhling, K. H. and Dittert, K. 2011. Rapid shift from denitrification to nitrification in soil after biogas residue application as indicated by nitrous oxide isotopomers. Soil Biology and Biochemistry. 43, pp. 1671-1677. https://doi.org/10.1016/j.soilbio.2011.04.004

Genetic mapping of rust resistance loci in biomass willow

A - Papers appearing in refereed journals
Hanley, S. J., Pei, M. H., Powers, S. J., Ruiz, C., Mallott, M. D., Barker, J. H. A. and Karp, A. 2011. Genetic mapping of rust resistance loci in biomass willow. Tree Genetics & Genomes. 7 (3), pp. 597-608. https://doi.org/10.1007/s11295-010-0359-x

Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis

A - Papers appearing in refereed journals
Goodwin, S. B., Ben M'barek, S., Dhillon, B., Wittenberg, A. H. J., Crane, C. F., Hane, J. K., Foster, A. J., Van Der Lee, T. A. J., Grimwood, J., Aerts, A., Antoniw, J. F., Bailey, A., Bluhm, B., Bowler, J., Bristow, J., Van Der Burgt, A., Canto-Canche, B., Churchill, A. C. L., Conde-Ferraez, L., Cools, H. J., Coutinho, P. M., Csukai, M., Dehal, P., De Wit, P., Donzelli, B., Van De Geest, H. C., Van Ham, R. C. H. J., Hammond-Kosack, K. E. and Rudd, J. J. 2011. Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity and stealth pathogenesis. PLOS Genetics. 7, p. e1002070 (17pp). https://doi.org/10.1371/journal.pgen.1002070

High rates of nitrogen cycling in volcanic soils from Chilean grasslands

A - Papers appearing in refereed journals
Dixon, E. R., Cardenas, L. M., Alfaro, M., Salazar, F. and Hatch, D. J. 2011. High rates of nitrogen cycling in volcanic soils from Chilean grasslands. Rapid Communications in Mass Spectrometry. 25 (11), pp. 1521-1526. https://doi.org/10.1002/rcm.4969

Perception of plant volatile blends by herbivorous insects - Finding the right mix

A - Papers appearing in refereed journals
Bruce, T. J. A. and Pickett, J. A. 2011. Perception of plant volatile blends by herbivorous insects - Finding the right mix. Phytochemistry. 72, pp. 1605-1611. https://doi.org/10.1016/j.phytochem.2011.04.011

Mutation of a nicotinic acetylcholine receptor beta subunit is associated with resistance to neonicotinoid insecticides in the aphid Myzus persicae

A - Papers appearing in refereed journals
Bass, C., Puinean, A. M., Andrews, M., Cutler, P., Daniels, M., Elias, J., Paul, V. L., Crossthwaite, A. J., Denholm, I., Field, L. M., Foster, S. P., Lind, R., Williamson, M. S. and Slater, R. 2011. Mutation of a nicotinic acetylcholine receptor beta subunit is associated with resistance to neonicotinoid insecticides in the aphid Myzus persicae. BMC Neuroscience. 12 (51). https://doi.org/10.1186/1471-2202-12-51

Gene amplification and insecticide resistance

A - Papers appearing in refereed journals
Bass, C. and Field, L. M. 2011. Gene amplification and insecticide resistance. Pest Management Science. 67 (8), pp. 886-890. https://doi.org/10.1002/ps.2189

Spatial sampling to detect an invasive pathogen outside of an eradication zone

A - Papers appearing in refereed journals
Demon, I., Cunniffe, N. J., Marchant, B. P., Gilligan, C. A. and Van Den Bosch, F. 2011. Spatial sampling to detect an invasive pathogen outside of an eradication zone. Phytopathology. 101 (6), pp. 725-731. https://doi.org/10.1094/PHYTO-05-09-0120

Differential growth of the fungus Absidia cylindrospora on 13C/15N-labelled media

A - Papers appearing in refereed journals
Crotty, F. V., Blackshaw, R. P. and Murray, P. J. 2011. Differential growth of the fungus Absidia cylindrospora on 13C/15N-labelled media. Rapid Communications in Mass Spectrometry. 25 (11), pp. 1479-1484. https://doi.org/10.1002/rcm.4888

Tracking the flow of bacterially derived 13C and 15N through soil faunal feeding channels

A - Papers appearing in refereed journals
Crotty, F. V., Blackshaw, R. P. and Murray, P. J. 2011. Tracking the flow of bacterially derived 13C and 15N through soil faunal feeding channels. Rapid Communications in Mass Spectrometry. 25 (11), pp. 1503-1513. https://doi.org/10.1002/rcm.4945

Manure management: implications for greenhouse gas emissions

A - Papers appearing in refereed journals
Chadwick, D. R., Sommer, S., Thorman, R., Fangueiro, D., Cardenas, L. M., Amon, B. and Misselbrook, T. H. 2011. Manure management: implications for greenhouse gas emissions. Animal Feed Science and Technology. 166-167, pp. 514-531. https://doi.org/10.1016/j.anifeedsci.2011.04.036

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