Rothamsted Research

TitleRothamsted Research
TypeInstitute

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Three Colletotrichum Species, Including a New Species, are Associated to Leaf Anthracnose of Rubber Tree in Hainan, China

A - Papers appearing in refereed journals
Cao, X., Xu, X., Che, H., West, J. S. and Luo, D. 2018. Three Colletotrichum Species, Including a New Species, are Associated to Leaf Anthracnose of Rubber Tree in Hainan, China. Plant Disease. 103 (1), pp. 117-124. https://doi.org/10.1094/PDIS-02-18-0374-RE

Prospects for improved off-crop habitat management for pollen beetle control in oilseed rape

A - Papers appearing in refereed journals
Cook, S. M. and Skellern, M. P. 2018. Prospects for improved off-crop habitat management for pollen beetle control in oilseed rape. Arthropod-Plant Interactions. 12 (6), pp. 849-866. https://doi.org/10.1007/s11829-018-9598-9

Cultivation and Use of Basket Willows - a guide to growing basket willows

E - Books edited/written by staff member, alone/with others
Macalpine, W. J., Burns, H., Hammerin, A., Shield, I. F., Butcher, M., Davies, O. and Bertram, G. 2018. Cultivation and Use of Basket Willows - a guide to growing basket willows. The Basketmakers Association.

Functional diversity positively affects prey suppression by invertebrate predators: a meta-analysis

A - Papers appearing in refereed journals
Greenop, A., Woodcock, B. A., Wilby, A., Cook, S. M. and Pywell, R. F. 2018. Functional diversity positively affects prey suppression by invertebrate predators: a meta-analysis. Ecology. 99 (8), pp. 1771-1782. https://doi.org/10.1002/ecy.2378

Developing a sustainable strategy to conserve reservoir marginal landscapes

A - Papers appearing in refereed journals
Tang, Q., Fu, B., Collins, A. L., Wen, A., He, X. and Bao, Y. 2018. Developing a sustainable strategy to conserve reservoir marginal landscapes. National Science Review. 5 (1), pp. 10-14. https://doi.org/10.1093/nsr/nwx102

Effect of long‐term drainage on plant community, soil carbon and nitrogen contents and stable isotopic (δ13C, δ15N) composition of a permanent grassland

A - Papers appearing in refereed journals
Harris, P., Bol, R., Evans, J., Hawkins, J. M. B., Dixon, E. R., Wolf, K., Dungait, J. A. J., Griffith, B. A., Herbst, M., Dhanoa, M. S., Beaumont, D. A., Dunn, R. M. and Weisenberg, G. L. B. 2018. Effect of long‐term drainage on plant community, soil carbon and nitrogen contents and stable isotopic (δ13C, δ15N) composition of a permanent grassland. European Journal of Soil Science. 69 (1), pp. 48-68. https://doi.org/10.1111/ejss.12504

Effects of cropping systems upon the three-dimensional architecture of soil systems are highly contingent upon texture

A - Papers appearing in refereed journals
Baco-Labreuil, A., Crawford, J. W., Mooney, S. J., Neal, A. L., Akkari, E., Mcauliffe, C., Zhang, X. X., Redmile-Gordon, M. A. and Ritz, K. 2018. Effects of cropping systems upon the three-dimensional architecture of soil systems are highly contingent upon texture. Geoderma. 332, pp. 73-83. https://doi.org/10.1016/j.geoderma.2018.07.002

Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance

A - Papers appearing in refereed journals
Neal, A. L., Blackwell, M. S. A., Akkari, E., Clark, I. M., Hirsch, P. R. and Guyomar, C. 2018. Phylogenetic distribution, biogeography and the effects of land management upon bacterial non-specific Acid phosphatase Gene diversity and abundance. Plant and Soil. 427, pp. 175-189. https://doi.org/10.1007/s11104-017-3301-2

Dynamic selection of environmental variables to improve the prediction of aphid phenology: A machine learning approach

A - Papers appearing in refereed journals
Holloway, P., Kudenko, D. and Bell, J. R. 2018. Dynamic selection of environmental variables to improve the prediction of aphid phenology: A machine learning approach. Ecological Indicators. 88 (May), pp. 512-521. https://doi.org/10.1016/j.ecolind.2017.10.032

Data to calculate emissions intensity for individual beef cattle reared on pasture-based production systems

A - Papers appearing in refereed journals
McAuliffe, G. A., Takahashi, T., Orr, R. J., Harris, P. and Lee, M. R. F. 2018. Data to calculate emissions intensity for individual beef cattle reared on pasture-based production systems. Data in Brief. 17, pp. 570-574. https://doi.org/10.1016/j.dib.2018.01.075

Roles of instrumented farm-scale trials in trade-off assessments of pasture-based ruminant production systems

A - Papers appearing in refereed journals
Takahashi, T., Harris, P., Blackwell, M. S. A., Cardenas, L. M., Collins, A. L., Dungait, J. A. J., Hawkins, J. M. B., Misselbrook, T. H., McAuliffe, G. A., McFadzean, J. N., Murray, P. J., Orr, R. J., Rivero, M. J., Wu, L. and Lee, M. R. F. 2018. Roles of instrumented farm-scale trials in trade-off assessments of pasture-based ruminant production systems. Animal. 12 (8), pp. 1766-1776. https://doi.org/10.1017/S1751731118000502

Salicin-7-sulfate: A new salicinoid from willow and implications for herbal medicine

A - Papers appearing in refereed journals
Noleto-Dias, C., Ward, J. L., Bellisai, A., Lomax, C. and Beale, M. H. 2018. Salicin-7-sulfate: A new salicinoid from willow and implications for herbal medicine. Fitoterapia. 127 (June), pp. 166-172. https://doi.org/10.1016/j.fitote.2018.02.009

The challenges of modelling phosphorus in a headwater catchment: Applying a "limits of acceptability" uncertaintly framework to a water quality model

A - Papers appearing in refereed journals
Hollaway, M. J., Beven, K. J., Benskin, C. McW. H., Collins, A. L., Evans, R., Falloon, P. D., Forber, K. J., Hiscock, K. M., Kahana, R., Macleod, C. J. A., Ockenden, M. C., Villamizar, M. L., Wearing, C., Withers, P. J. A., Zhou, J. G., Barber, N. J. and Haygarth, P. M. 2018. The challenges of modelling phosphorus in a headwater catchment: Applying a "limits of acceptability" uncertaintly framework to a water quality model. Journal of Hydrology. 558, pp. 607-624. https://doi.org/10.1016/j.jhydrol.2018.01.063

Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice

A - Papers appearing in refereed journals
Sharma, N., Tang, T. M., Singh, N., Ruzicic, S., Mueller-Roeber, B., Baumann, U. and Heuer, S. 2018. Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice. Rice. 11 (2). https://doi.org/10.1186/s12284-017-0192-z

The genome of the biting midge Culicoides sonorensis and gene expression analyses of vector competence for Bluetongue virus

A - Papers appearing in refereed journals
Morales-Hojas, R., Hinsley, M., Armean, I .M., Silk, R., Harrup, L. E., Gonzalez-Uriarte, A., Veronesi, E., Campbell, L., Nayduch, D., Saski, C., Tabachnick, W. J., Kersey, P., Carpenter, S. and Fife, M. 2018. The genome of the biting midge Culicoides sonorensis and gene expression analyses of vector competence for Bluetongue virus. BMC Genomics. 19, p. 624. https://doi.org/10.1101/249482

Trehalose 6-phosphate regulates photosynthesis and assimilate partitioning in reproductive tissue

A - Papers appearing in refereed journals
Paul, M. J., Oszvald, M., Primavesi, L. F. and Griffiths, C. A. 2018. Trehalose 6-phosphate regulates photosynthesis and assimilate partitioning in reproductive tissue. Plant Physiology. 176 (2). https://doi.org/10.1104/pp.17.01673

Where are the drought tolerant crops? An assessment of more than two decades of plant biotechnology effort in crop improvement

A - Papers appearing in refereed journals
Nuccio, M. L., Paul, M. J., Bate, N. J., Cohn, J. and Cutler, S. R. 2018. Where are the drought tolerant crops? An assessment of more than two decades of plant biotechnology effort in crop improvement. Plant Science. 273 (August), pp. 110-119. https://doi.org/10.1016/j.plantsci.2018.01.020

Are GM Crops for Yield and Resilience Possible?

A - Papers appearing in refereed journals
Paul, M. J., Nuccio, M. L. and Basu, S. S. 2018. Are GM Crops for Yield and Resilience Possible? Trends in Plant Science. 23 (1), pp. 10-16. https://doi.org/10.1016/j.tplants.2017.09.007

The effect of microbial activity on soil water diffusivity

A - Papers appearing in refereed journals
Choudhury, B. U., Ferraris, S., Ashton, R. W., Powlson, D. S. and Whalley, W. R. 2018. The effect of microbial activity on soil water diffusivity. European Journal of Soil Science. 69 (3), pp. 407-413. https://doi.org/10.1111/ejss.12535

Assessing the potential impacts of a revised set of on-farm nutrient and sediment "basic" control measures for reducing agricultural diffuse pollution across England

A - Papers appearing in refereed journals
Collins, A. L., Newell Price, J. P., Zhang, Y., Gooday, R., Naden, P. S. and Skirvin, D. 2018. Assessing the potential impacts of a revised set of on-farm nutrient and sediment "basic" control measures for reducing agricultural diffuse pollution across England. Science of the Total Environment. 621, pp. 1499-1511. https://doi.org/10.1016/j.scitotenv.2017.10.078

Mineral N stock and nitrate accumulation in the 50 to 200 m profile on the Loess Plateau

A - Papers appearing in refereed journals
Jia, X., Zhu, Y., Huang, L., Wei, X., Fang, Y., Wu, L., Binley, A. and Shao, M. 2018. Mineral N stock and nitrate accumulation in the 50 to 200 m profile on the Loess Plateau. Science of the Total Environment. 633, p. 999–1006. https://doi.org/10.1016/j.scitotenv.2018.03.249

How shallow and how many points of measurements are sufficient to estimate the deep profile mean soil water content of a hillslope in the Loess Plateau?

A - Papers appearing in refereed journals
Zhang, Y., Huang, M., Hu, W., Suo, L., Duan, L. and Wu, L. 2018. How shallow and how many points of measurements are sufficient to estimate the deep profile mean soil water content of a hillslope in the Loess Plateau? Geoderma. 314, pp. 85-94. https://doi.org/10.1016/j.geoderma.2017.11.013

Peri-urbanization may vary with vegetation restoration: A large scale regional analysis

A - Papers appearing in refereed journals
Fu, W., Lu, Y., Harris, P., Comber, A. and Wu, L. 2018. Peri-urbanization may vary with vegetation restoration: A large scale regional analysis. Urban Forestry and Urban Greening. 29, pp. 77-87. https://doi.org/10.1016/j.ufug.2017.11.006

Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N2O emissions

A - Papers appearing in refereed journals
Ehrhardt, F., Soussana, J-F., Bellocchi, G., Grace, P., McAuliffe, R., Recous, S., Sandor, R., Smith, P., Snow, V., De Antoni Migliorati, M., Basso, B., Bhatia, A., Brilli, L., Doltra, J., Dorich, C. D., Doro, L., Fitton, N., Giacomini, S., Grant, B., Harrison, M., Jones, S., Kirschbaum, M., Klumpp, K., Laville, P., leonard, J., Liebig, M., Lieffering, M., Martin, R., Massad, R. S., Meier, E., Merbold, L., Moore, A., Myrgiotis, V., Newton, P., Pattey, E., Rolinski, S., Sharp, J., Smith, W., Wu, L. and Zhang, Q. 2018. Assessing uncertainties in crop and pasture ensemble model simulations of productivity and N2O emissions. Global Change Biology. 24 (2), p. e603–e616. https://doi.org/10.1111/gcb.13965

Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb)

A - Papers appearing in refereed journals
Baldwin, T. T., Basenko, E., Harb, O., Brown, N. A., Urban, M., Hammond-Kosack, K. E. and Bregitzer, P. P. 2018. Sharing mutants and experimental information prepublication using FgMutantDb (https://scabusa.org/FgMutantDb). Fungal Genetics and Biology. 115 (June), pp. 90-93. https://doi.org/10.1016/j.fgb.2018.01.002

The role of pasture in the diet of ruminant livestock

B - Book chapters etc edited externally
Lee, M. R. F., Rivero-Viera, J. and Cone, J. W. 2018. The role of pasture in the diet of ruminant livestock. in: Marshall, A. and Collins, R. (ed.) Improving grassland and pasture management in temperate agriculture UK Burleigh Dodds.

Distributions of emissions intensity for individual beef cattle reared on pasture-based production systems

A - Papers appearing in refereed journals
McAuliffe, G. A., Takahashi, T., Orr, R. J., Harris, P. and Lee, M. R. F. 2018. Distributions of emissions intensity for individual beef cattle reared on pasture-based production systems. Journal of Cleaner Production. 171, pp. 1672-1680. https://doi.org/10.1016/j.jclepro.2017.10.113

Soil organic matter widens the range of water contents for tillage

A - Papers appearing in refereed journals
Obour, P. B., Jensen, J. L., Lamande, M., Watts, C. W. and Munkholm, L. J. 2018. Soil organic matter widens the range of water contents for tillage. Soil & Tillage Research. 182 (October), pp. 57-65. https://doi.org/10.1016/j.still.2018.05.001

Neofunctionalization of Duplicated P450 Genes Drives the Evolution of Insecticide Resistance in the Brown Planthopper

A - Papers appearing in refereed journals
Zimmer, C. T., Garrood, W. T., Singh, K. S., Randall, E., Lueke, B., Gutbrod, O., Matthiesen, S., Kohler, M., Nauen, R., Davies, T. G. E. and Bass, C. 2018. Neofunctionalization of Duplicated P450 Genes Drives the Evolution of Insecticide Resistance in the Brown Planthopper. Current Biology. 28 (2), pp. 268-274. https://doi.org/10.1016/j.cub.2017.11.060

Excretion of avenanthramides, phenolic acids and their major metabolites following intake of oat bran

A - Papers appearing in refereed journals
Schar, M. Y., Corona, G., Soycan, G., Dine, C., Kristek, A., Alsahrif, S. N. S., Behrends, V., Lovegrove, A., Shewry, P. R. and Spencer, J. P. E. 2018. Excretion of avenanthramides, phenolic acids and their major metabolites following intake of oat bran. Molecular Nutrition & Food Research. 62 (2), p. 1700499. https://doi.org/10.1002/mnfr.201700499

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

A - Papers appearing in refereed journals
Saintennac, C., Lee, W. S., Cambon, F., Rudd, J. J., King, R., Marande, W., Powers, S. J., Berges, H., Phillips, A. L., Uauy, C., Hammond-Kosack, K. E., Langin, T. and Kanyuka, K. 2018. Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici. Nature Genetics. 50, pp. 368-374. https://doi.org/10.1038/s41588-018-0051-x

Hyperspectral measurements of yellow rust and fusarium head blight in cereal crops: Part 1: Laboratory study

A - Papers appearing in refereed journals
Whetton, R. L., Hassall, K. L., Waine, T. W. and Mouazen, A. M. 2018. Hyperspectral measurements of yellow rust and fusarium head blight in cereal crops: Part 1: Laboratory study. Biosystems Engineering. 166, pp. 101-115. https://doi.org/10.1016/j.biosystemseng.2017.11.008

Beyond the one-way ANOVA for 'omics data

A - Papers appearing in refereed journals
Hassall, K. L. and Mead, A. 2018. Beyond the one-way ANOVA for 'omics data. BMC Bioinformatics. 19 (Suppl 7), p. 199. https://doi.org/10.1186/s12859-018-2173-7

Major limitations to achieving 4 per 1000 increases in soil organic carbon stock in temperate regions: evidence from long-term experiments at Rothamsted Research, UK

A - Papers appearing in refereed journals
Poulton, P. R., Johnston, A. E., Macdonald, A. J., White, R. P. and Powlson, D. S. 2018. Major limitations to achieving 4 per 1000 increases in soil organic carbon stock in temperate regions: evidence from long-term experiments at Rothamsted Research, UK. Global Change Biology. 24 (6), pp. 2563-2584. https://doi.org/10.1111/gcb.14066

The origins of global invasions of the German wasp (Vespula germanica) and its infection with four honey bee viruses

A - Papers appearing in refereed journals
Brenton-Rule, E., Doblemann, J., Baty, J. W., Brown, R., Dvorak, L., Grangier, J., Massiochi, M., McGrannachan, C., Shortall, C. R., Schmack, J., Van Zyl, C., Veldtman, R. and Lester, P. J. 2018. The origins of global invasions of the German wasp (Vespula germanica) and its infection with four honey bee viruses. Biological Invasions. 20 (12), p. 3445–3460. https://doi.org/10.1007/s10530-018-1786-0

Input data needed for a risk model for the entry, establishment and spread of a pathogen (Phomopsis vaccinii) of blueberries and cranberries in the EU

A - Papers appearing in refereed journals
Van Bruggen, A. H. C., West, J. S., Van der Werf, W., Potting, R. P. J., Gardi, C., Koufakis, I., Zelenev, V. V., Narouei-Khandan, H., Schilder, A. and Harmon, P. 2018. Input data needed for a risk model for the entry, establishment and spread of a pathogen (Phomopsis vaccinii) of blueberries and cranberries in the EU. Annals of Applied Biology. 172 (2), pp. 126-147. https://doi.org/10.1111/aab.12414

Do ancient types of wheat have health benefits compared with modern bread wheat?

A - Papers appearing in refereed journals
Shewry, P. R. 2018. Do ancient types of wheat have health benefits compared with modern bread wheat? Journal of Cereal Science. 79, pp. 469-476. https://doi.org/10.1016/j.jcs.2017.11.010

The stable oxygen isotope ratio of resin extractable phosphate derived from fresh cattle faeces

A - Papers appearing in refereed journals
Granger, S. J., Yang, Y., Pfahler, V., Hodgson, C., Smith, A. C., Le Cocq, K., Collins, A. L., Blackwell, M. S. A. and Howden, N. K. J. 2018. The stable oxygen isotope ratio of resin extractable phosphate derived from fresh cattle faeces. Rapid Communications in Mass Spectrometry. 32 (9), pp. 703-710. https://doi.org/10.1002/rcm.8092

UK Environmental Change Network (ECN) spittle bug data: 1993-2015

N - Datasets
Rennie, S., Adamson, J., Anderson, R., Andrews, C., Bater, J., Bayfield, N., Beaton, K., Beaumont, D. A., Benham, S., Bowmaker, V., Britt, C., Brooker, R., Brooks, D. R., Brunt, J., Common, G., Cooper, R., Corbett, S., Critchley, N., Dennis, P., Dick, J., Dodd, B., Dodd, N., Donovan, N., Easter, J., Flexen, M., Gardiner, A., Hamilton, D., Hargreaves, P., Howe, M., Kahl, J., Lane, M., Langan, S., Lloyd, D., McElarney, Y., McKenna, C., McMillan, S., Milne, F., Milne, L., Morecroft, M., Murphy, M., Nelson, A., Nicholson, H., Pallett, D., Parry, D., Pearce, I., Pozsgai, G., Rose, R., Schafer, S., Scott, T., Sherrin, L., Shortall, C. R., Smith, P., Smith, R. I., Tait, R., Taylor, C., Taylor, M., Thurlow, M., Tilbury, C., Turner, A., Tyson, K., Watson, H., Whittaker, M. and Wood, C. 2018. UK Environmental Change Network (ECN) spittle bug data: 1993-2015 . NERC Environmental Information Data Centre. https://doi.org/10.5285/aff433be-0869-4393-b765-9e6faad2a12b

Transcriptome changes induced by arbuscular mycorrhizal fungi in sunflower (Helianthus annuus L.) roots

A - Papers appearing in refereed journals
Vangelisti, A., Natali, L., Bernardi, R., Sbrana, C., Turrini, A., Hassani-Pak, K., Hughes, D. J., Cavallini, A., Giovannetti, M. and Giordani, T. 2018. Transcriptome changes induced by arbuscular mycorrhizal fungi in sunflower (Helianthus annuus L.) roots. Scientific Reports. 8 (4), pp. 1-14. https://doi.org/10.1038/s41598-017-18445-0

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