The effect of farmers' decisions on pest control with Bt crops: a billion dollar game of strategy

Milne, A. E., Bell, J. R., Hutchison, W. D., Van Den Bosch, F., Mitchell, P. D., Crowder, D., Parnell, S. and Whitmore, A. P. 2015. The effect of farmers' decisions on pest control with Bt crops: a billion dollar game of strategy. PLOS Computational Biology. 11, p. e1004483. https://doi.org/10.1371/journal.pcbi.1004483

Authors	Milne, A. E., Bell, J. R., Hutchison, W. D., Van Den Bosch, F., Mitchell, P. D., Crowder, D., Parnell, S. and Whitmore, A. P.
Year of Publication	2015
Journal	PLOS Computational Biology
Journal citation	11, p. e1004483
Digital Object Identifier (DOI)	https://doi.org/10.1371/journal.pcbi.1004483
Open access	Published as ‘gold’ (paid) open access
Funder	Biotechnology and Biological Sciences Research Council
Funder project or code	Delivering Sustainable Systems (SS) [ISPG]
	Quantifying Sustainable Systems
Publisher's version	pcbi.1004483.pdf
Publisher	Public Library of Science, San Fancisco (PLOS)
	Public Library of Science (PLOS)
ISSN	1553-734X

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Multi-objective optimization as a tool to identify possibilities for future agricultural landscapes

A - Papers appearing in refereed journals

Todman, L. C., Coleman, K., Milne, A. E., Gil, J. D. B., Reidsma, P., Schwoob, M-H., Treyer, S. and Whitmore, A. P. 2019. Multi-objective optimization as a tool to identify possibilities for future agricultural landscapes. Science of the Total Environment. 687 (15 October), pp. 535-545. https://doi.org/10.1016/j.scitotenv.2019.06.070

Exploring future food provision scenarios for China

A - Papers appearing in refereed journals

Ma, L., Bai, Z., Ma, M., Guo, M., Jiang, R., Liu, J., Oenema, O., Velthof, G. L., Whitmore, A. P., Crawford, J. W., Dobermann, A., Schwoob, M. and Zhang, F. 2019. Exploring future food provision scenarios for China. Environmental Science & Technology. 53 (3), pp. 1385-1393. https://doi.org/10.1021/acs.est.8b04375

Spatial and habitat variation in aphid, butterfly, moth and bird phenologies over the last half century

A - Papers appearing in refereed journals

Bell, J. R., Botham, M. S., Henrys, P. A., Leech, D. I., Pearce-Higgins, J. W., Shortall, C. R., Brereton, T. M., Pickup, J. and Thackeray, S. J. 2019. Spatial and habitat variation in aphid, butterfly, moth and bird phenologies over the last half century. Global Change Biology. 25 (6), pp. 1982-1994. https://doi.org/10.1111/gcb.14592

Facilitating the elicitation of beliefs for use in Bayesian Belief modelling

A - Papers appearing in refereed journals

Hassall, K. L., Dailey, A. G., Zawadzka, J., Milne, A. E., Harris, J. A., Corstanje, R. and Whitmore, A. P. 2019. Facilitating the elicitation of beliefs for use in Bayesian Belief modelling. Environmental Modelling and Software. 122, p. 104539. https://doi.org/10.1016/j.envsoft.2019.104539

Accounting for data sparsity when forming spatially coherent zones

A - Papers appearing in refereed journals

Hassall, K. L., Whitmore, A. P. and Milne, A. E. 2019. Accounting for data sparsity when forming spatially coherent zones. Applied Mathematical Modelling. 72 (August), pp. 537-552. https://doi.org/10.1016/j.apm.2019.03.030

Modelling the effect of spatially variable soil properties on the distribution of weeds

A - Papers appearing in refereed journals

Metcalfe, H., Milne, A. E., Coleman, K., Murdoch, A. J. and Storkey, J. 2019. Modelling the effect of spatially variable soil properties on the distribution of weeds. Ecological Modelling. 396 (24 March), pp. 1-11. https://doi.org/10.1016/j.ecolmodel.2018.11.002

The relationships between seedling root screens, root growth in the field and grain yield for wheat

A - Papers appearing in refereed journals

Bai, C., Ge, Y., Ashton, R. W., Evans, J., Milne, A. E., Hawkesford, M. J., Whalley, W. R., Parry, M. A. J., Melichar, J., Feuerhelm, D., Bansept, P. and Bartsch, M. 2019. The relationships between seedling root screens, root growth in the field and grain yield for wheat . Plant and Soil. https://doi.org/10.1007/s11104-019-04088-9

Sustainable Development Goal 2: improved targets and indicators for agriculture and food security

A - Papers appearing in refereed journals

Juliana Dias Bernandes Gil, Pytrik Reidsma, Ken Giller, Lindsay Todman, Whitmore, A. P. and Martin van Ittersum 2019. Sustainable Development Goal 2: improved targets and indicators for agriculture and food security . AMBIO: A Journal of the Human Environment. 48 (7), pp. 685-698. https://doi.org/10.1007/s13280-018-1101-4

Soil bulk density impacts on root water potential and ABA export in drying soil

A - Papers appearing in refereed journals

Donaldson, S., Dodd, I. C. and Whitmore, A. P. 2018. Soil bulk density impacts on root water potential and ABA export in drying soil. Acta Horticulturae. 1197 (1197), pp. 15-22. https://doi.org/10.17660/ActaHortic.2018.1197.3

Insect population trends and the IUCN Red List process

A - Papers appearing in refereed journals

Fox, R., Harrower, C.A., Bell, J. R., Shortall, C. R., Middlebrook, I. and Wilson, R.J. 2018. Insect population trends and the IUCN Red List process. Journal of Insect Conservation. pp. 1-10. https://doi.org/10.1007/s10841-018-0117-1

Using epidemiological principles to explain fungicide resistance management tactics: why do mixtures outperform alternations?

A - Papers appearing in refereed journals

Elderfield, J. A. D., Lopez-Ruiz, F. J., Van Den Bosch, F. and Cunniffe, N. J. 2018. Using epidemiological principles to explain fungicide resistance management tactics: why do mixtures outperform alternations? Phytopathology. 108 (7), pp. 803-817. https://doi.org/10.1094/PHYTO-08-17-0277-R

Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance

A - Papers appearing in refereed journals

Kema, G. H. J., Mirzadi Gohari, A., Aouini, L., Gibriel, H. A. Y., Ware, S. B., Van Den Bosch, F., Manning-Smith, R., Alonso Chavez, V., Helps, J., Ben M’Barek, S., Mehrabi, R., Diaz-Trujillo, C., Zamani, E., Schouten, H. J., Van Der Lee, T. A. J., Waalwijk, C., de Waard, M. A., de Wit, P. J. G. M., Verstappen, E. C. P., Thomma, B. P. H. J., Meijer, H. J. G. and Seidl, M.l F. 2018. Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance. Nature Genetics. 50 (3), pp. 375-380. https://doi.org/10.1038/s41588-018-0052-9

Identifying when it is financially beneficial to increase or decrease fungicide dose as resistance develops

A - Papers appearing in refereed journals

Van Den Bosch, F., Lopez-Ruiz, F., Oliver, R., Paveley, N., Helps, J. and Van Den Berg, F. 2018. Identifying when it is financially beneficial to increase or decrease fungicide dose as resistance develops. Plant Pathology. 67 (3), pp. 549-560. https://doi.org/10.1111/ppa.12787

Nitrogen fertiliser replacement values for organic amendments appear to increase with N application rates

A - Papers appearing in refereed journals

Hijbeek, R., Ten Berge, H. F. M., Whitmore, A. P., Barkusky, D., Schröder, J. J. and Van Ittersum, M. K. 2018. Nitrogen fertiliser replacement values for organic amendments appear to increase with N application rates. Nutrient Cycling in Agroecosystems. 110 (1), pp. 105-115. https://doi.org/10.1007/s10705-017-9875-5

Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive

E - Books edited/written by staff member, alone/with others

Macdonald, A. J., Poulton, P. R., Clark, I. M., Scott, T., Glendining, M. J., Perryman, S. A. M., Storkey, J., Bell, J. R., Shield, I. F., Mcmillan, V. E. and Hawkins, J. M. B. Macdonald, A. J. (ed.) 2018. Rothamsted Long-term experiments : guide to the classical and other long-term experiments, datasets and sample archive. Rothamsted Research, Harpenden.

Valuing Improvements in Biodiversity Due to Controls on Atmospheric Nitrogen Pollution

A - Papers appearing in refereed journals

Jones, L., Milne, A. E., Hall, J., Mills, G., Provins, A. and Christie, M. 2018. Valuing Improvements in Biodiversity Due to Controls on Atmospheric Nitrogen Pollution. Ecological Economics. 152, pp. 358-366. https://doi.org/10.1016/j.ecolecon.2018.06.010

Evidence for functional state transitions in intensively-managed soil ecosystems

A - Papers appearing in refereed journals

Todman, L. C., Fraser, F. C., Corstanje, R., Harris, J. A., Pawlett, M., Ritz, K. and Whitmore, A. P. 2018. Evidence for functional state transitions in intensively-managed soil ecosystems. Scientific Reports. 8 (11522). https://doi.org/10.1038/s41598-018-29925-2

Variability in commercial demand for tree saplings affects the probability of introducing exotic forest diseases

A - Papers appearing in refereed journals

Alonso Chavez, V., Gilligan, C. A. and Van Den Bosch, F. 2018. Variability in commercial demand for tree saplings affects the probability of introducing exotic forest diseases. Journal of Applied Ecology. 56 (1), pp. 80-89. https://doi.org/10.1111/1365-2664.13242

Climate Change And Insect Pests: Monitoring And Surveillance Of The Migratory Phase For Smart Crop Protection

A - Papers appearing in refereed journals

Bell, J. R. 2018. Climate Change And Insect Pests: Monitoring And Surveillance Of The Migratory Phase For Smart Crop Protection. Phytoma. 300 (June), pp. 84-86.

Growers’ risk perception and trust in control options for huanglongbing citrus-disease in Florida and California

A - Papers appearing in refereed journals

Milne, A., Teiken, C., Deledalle, F., Vandenbosch, F., Gottwalk, T. and McRoberts, N. 2018. Growers’ risk perception and trust in control options for huanglongbing citrus-disease in Florida and California. Crop Protection. 114, pp. 177-186. https://doi.org/10.1016/j.cropro.2018.08.028

Spatial Analysis of Digital Imagery of Weeds in a Maize Crop

A - Papers appearing in refereed journals

San-Martin-Hernandez, C., Milne, A. E., Webster, R., Storkey, J., Andujar, D., Fernandez-Quintanilla, C. and Dorado, J. 2018. Spatial Analysis of Digital Imagery of Weeds in a Maize Crop. ISPRS International Journal of Geo-Information. 7 (2), pp. 61-81. https://doi.org/10.3390/ijgi7020061

Defining the habitat niche of Alopecurus myosuroides at the field scale

A - Papers appearing in refereed journals

Metcalfe, H., Milne, A. E., Webster, R., Lark, R. M., Murdoch, A. J., Kanelo, L. and Storkey, J. 2018. Defining the habitat niche of Alopecurus myosuroides at the field scale. Weed Research. 58 (3), pp. 165-176. https://doi.org/10.1111/wre.12300

The environmental costs and benefits of high-yield farming

A - Papers appearing in refereed journals

Balmford, A., Amano, T., Bartlett, H., Chadwick, D., Collins, A. L., Edwards, D., Field, R., Garnsworthy, P., Green, R., Smith, P., Waters, H., Whitmore, A. P., Broom, D. M., Chara, J., Finch, T., Garnett, E., Gathorne-Hardy, A., Hernandez-Medrano, J., Herrero, M., Hua, F., Latawiec, A., Misselbrook, T. H., Phalan, B., Simmons I. B., Takahashi, T., Vause, J., Ermgassen, E. Z. and Eisner, R. 2018. The environmental costs and benefits of high-yield farming. Nature Sustainability. 1, pp. 477-285. https://doi.org/10.1038/s41893-018-0138-5

Dynamic selection of environmental variables to improve the prediction of aphid phenology: A machine learning approach

A - Papers appearing in refereed journals

Holloway, P., Kudenko, D. and Bell, J. R. 2018. Dynamic selection of environmental variables to improve the prediction of aphid phenology: A machine learning approach. Ecological Indicators. 88 (May), pp. 512-521. https://doi.org/10.1016/j.ecolind.2017.10.032

Impact of two centuries of intensive agriculture on soil carbon, nitrogen and phosphorus cycling in the UK

A - Papers appearing in refereed journals

Muhammed, S. E., Coleman, K., Wu, L., Bell, V. A., Davies, J. A. C., Carnell, E. J., Tomlinson, S. J., Dore, A. J., Dragosits, U., Naden, P. S., Glendining, M. J., Whitmore, A. P. and Tipping, E. 2018. Impact of two centuries of intensive agriculture on soil carbon, nitrogen and phosphorus cycling in the UK. Science of the Total Environment. 634 (1 September), pp. 1486-1504. https://doi.org/10.1016/j.scitotenv.2018.03.378

The sensitivity of breeding songbirds to changes in seasonal timing is linked to population change but cannot be directly attributed to the effects of trophic asynchrony on productivity

A - Papers appearing in refereed journals

Franks, S. E., Pearce-Higgins, J. W., Atkinson, S., Bell, J. R., Botham, M. S., Brereton, T. M., Harrington, R. and Leech, D. I. 2018. The sensitivity of breeding songbirds to changes in seasonal timing is linked to population change but cannot be directly attributed to the effects of trophic asynchrony on productivity. Global Change Biology. 24 (3), pp. 957-971. https://doi.org/10.1111/gcb.13960

Milled cereal straw accelerates earthworm (Lumbricus terrestris) growth more than selected organic amendments Corrigendum

A - Papers appearing in refereed journals

Sizmur, T., Martin, E., Wagner, K., Parmentier, E., Watts, C. W. and Whitmore, A. P. 2017. Milled cereal straw accelerates earthworm (Lumbricus terrestris) growth more than selected organic amendments Corrigendum. Applied Soil Ecology. 113, pp. 166-177.

Improvement of soil structure and crop yield by adding organic matter to soil (AHDB Project Report No.576)

D1 - Technical reports: non-confidential

Whitmore, A. P., Watts, C. W., Stroud, J. L., Sizmur, T., Ebrahim, S. M., Pawlett, M., Harris, J., Ritz, K., Wallace, P., White, E., Stobart, R., McKenzie, B. and Thallon, G. 2017. Improvement of soil structure and crop yield by adding organic matter to soil (AHDB Project Report No.576). Stoneleigh Agriculture and Horticulture Development Board.

Plant virus epidemiology: applications and prospects for mathematical modeling and analysis to improve understanding and disease control

A - Papers appearing in refereed journals

Jeger, M. J., Madden, L. V. and Van Den Bosch, F. 2017. Plant virus epidemiology: applications and prospects for mathematical modeling and analysis to improve understanding and disease control. Plant Disease. 102 (5), pp. 837-854. https://doi.org/10.1094/PDIS-04-17-0612-FE

Does variable soil pH have an effect on the within-field distribution of A. Myosuroides?

C1 - Edited contributions to conferences/learned societies

Metcalfe, H., Milne, A. E., Murdoch, A. J. and Storkey, J. 2017. Does variable soil pH have an effect on the within-field distribution of A. Myosuroides? Hull, R. I. C., Jellis, G., May, M., Miller, P., Moss, S. R., Nicholls, C. and Orson, J. (ed.) In : Crop Production in Southern Britain 2017, AAB 134. Association of Applied Biologists (AAB) Wellesbourne Warwick .

Strategies to delay the development of fungicide resistance : Alternation , mixtures or restricting the number of treatments?

C1 - Edited contributions to conferences/learned societies

Young, C., Van Den Bosch, F., Fraaije, B. A., Burnett, F., Knight, S., Gosling, P. and Paveley, N. 2017. Strategies to delay the development of fungicide resistance : Alternation , mixtures or restricting the number of treatments? Hull, R. I. C., Jellis, G., May, M., Miller, P., Moss, S. R., Nicholls, C. and Orson, J. (ed.) In : Crop Production in Southern Britain 2017, AAB 134. Association of Applied Biologists (AAB) Wellesbourne Warwick .

The basic reproduction number of vector-borne plant virus epidemics

A - Papers appearing in refereed journals

Van Den Bosch, F. and Jeger, M. J. 2017. The basic reproduction number of vector-borne plant virus epidemics. Virus Research. 241, pp. 196-202. https://doi.org/10.1016/j.virusres.2017.06.014

Physiological traits determining yield tolerance of wheat to foliar diseases

A - Papers appearing in refereed journals

Van Den Berg, F., Paveley, N. D., Bingham, I. J. and Van Den Bosch, F. 2017. Physiological traits determining yield tolerance of wheat to foliar diseases. Phytopathology. 107 (12), pp. 1468-1478. https://doi.org/10.1094/phyto-07-16-0283-r

Epidemiology: Past, Present, and Future Impacts on Understanding Disease Dynamics and Improving Plant Disease Management-A Summary of Focus Issue Articles

A - Papers appearing in refereed journals

Ojiambo, P. S., Yuen, J., Van Den Bosch, F. and Madden, L. V. 2017. Epidemiology: Past, Present, and Future Impacts on Understanding Disease Dynamics and Improving Plant Disease Management-A Summary of Focus Issue Articles. Phytopathology. 107 (10), pp. 1092-1094. https://doi.org/10.1094/PHYTO-07-17-0248-FI

Considering behaviour to ensure the success of a disease control strategy

A - Papers appearing in refereed journals

McQuaid, C. F., Gilligan, C. A. and Van Den Bosch, F. 2017. Considering behaviour to ensure the success of a disease control strategy. Royal Society Open Science. 4 (12). https://doi.org/10.1098/rsos.170721

Aphid population dynamics: from fields to landscapes

B - Book chapters etc edited externally

Bell, J. R., Pierre, J-S. and Dedryver, C. A. 2017. Aphid population dynamics: from fields to landscapes. in: Van Emden, H. F. and Harrington, R. (ed.) In: Aphids as crop pests, 2nd edition (Chapter 13) CABI International, Wallingford, Oxon (CABI). pp. 280-302

Surveillance to Inform Control of Emerging Plant Diseases: An Epidemiological Perspective

A - Papers appearing in refereed journals

Parnell, S. R., Van Den Bosch, F., Gottwald, T. R. and Gilligan, C. A. 2017. Surveillance to Inform Control of Emerging Plant Diseases: An Epidemiological Perspective. Annual Review of Phytopathology. 55 (1), pp. 591-610. https://doi.org/10.1146/annurev-phyto-080516-035334

Emergence of Resistance to Fungicides: The Role of Fungicide Dose

A - Papers appearing in refereed journals

Mikaberidze, A., Paveley, N., Bonhoeffer, S. and Van Den Bosch, F. 2017. Emergence of Resistance to Fungicides: The Role of Fungicide Dose. Phytopathology. 107 (5), pp. 545-560. https://doi.org/10.1094/PHYTO-08-16-0297-R

A method of determining where to target surveillance efforts in heterogeneous epidemiological systems

A - Papers appearing in refereed journals

Mastin, A. J., Van Den Bosch, F., Gottwald, T. R., Alonso Chavez, V. and Parnell, S. R. 2017. A method of determining where to target surveillance efforts in heterogeneous epidemiological systems. PLOS Computational Biology. 13 (8), p. e1005712. https://doi.org/10.1371/journal.pcbi.1005712

Integrating regulatory surveys and citizen science to map outbreaks of forest diseases: acute oak decline in England and Wales

A - Papers appearing in refereed journals

Brown, N., Van Den Bosch, F., Parnell, S. and Denman, S. 2017. Integrating regulatory surveys and citizen science to map outbreaks of forest diseases: acute oak decline in England and Wales. Proceedings of the Royal Society B: Biological Sciences. 284 (1859), pp. 1-7. https://doi.org/10.1098/rspb.2017.0547

The landscape model: A model for exploring trade-offs between agricultural production and the environment

A - Papers appearing in refereed journals

Coleman, K., Muhammed, S. E., Milne, A. E., Todman, L. C., Dailey, A. G., Glendining, M. J. and Whitmore, A. P. 2017. The landscape model: A model for exploring trade-offs between agricultural production and the environment. Science of the Total Environment. 609 (Supplement C), pp. 1483-1499. https://doi.org/10.1016/j.scitotenv.2017.07.193

Extending the durability of cultivar resistance by limiting epidemic growth rates

A - Papers appearing in refereed journals

Carolan, K., Helps, J., Van Den Berg, F., Bain, R., Paveley, N. and Van Den Bosch, F. 2017. Extending the durability of cultivar resistance by limiting epidemic growth rates. Proceedings of the Royal Society B: Biological Sciences. 284 (1863), pp. 1-8. https://doi.org/10.1098/rspb.2017.0828

Handbook of protocols for standardized measurement of terrestrial invertebrate functional traits

A - Papers appearing in refereed journals

Moretti, M., Dias, A. T. C., De Bello, F., Altermatt, F., Chown, S. L., Azacrate, F. M., Bell, J. R., Fournier, B., Hedde, M., Hortal, J., Ibanez, S., Ockinger, E., Sousa, J. P., Ellers, J. and Berg, M. P. 2017. Handbook of protocols for standardized measurement of terrestrial invertebrate functional traits. Functional Ecology. 31 (3), pp. 558-567. https://doi.org/10.1111/1365-2435.12776

A New Approach to Modelling the Relationship Between Annual Population Abundance Indices and Weather Data

A - Papers appearing in refereed journals

Elston, D. A., Brewer, M. J., Martay, B., Johnston, A., Henrys, P. A., Bell, J. R., Harrington, R., Monteith, D. T., Brereton, T. M., Boughey, K. L. and Pearce-Higgins, J. W. 2017. A New Approach to Modelling the Relationship Between Annual Population Abundance Indices and Weather Data. Journal of Agricultural Biological and Environmental Statistics. 22 (4), pp. 427-445. https://doi.org/10.1007/s13253-017-0287-4

Identifying circumstances under which high insecticide dose increases or decreases resistance selection

A - Papers appearing in refereed journals

Helps, J., Paveley, N. D. and Van Den Bosch, F. 2017. Identifying circumstances under which high insecticide dose increases or decreases resistance selection. Journal of Theoretical Biology. 428 (7 September), pp. 153-167. https://doi.org/10.1016/j.jtbi.2017.06.007

Data from: Integrating regulatory surveys and citizen science to map outbreaks of forest diseases: acute oak decline in England and Wales

N - Datasets

Brown, N., Van Den Bosch, F., Parnell, S. and Denman, S. 2017. Data from: Integrating regulatory surveys and citizen science to map outbreaks of forest diseases: acute oak decline in England and Wales. Dryad Data Repository. https://doi.org/10.5061/dryad.18157

Assessing sampling designs for determining fertilizer practice from yield data

A - Papers appearing in refereed journals

Muhammed, S. E., Marchant, B. P., Webster, R., Whitmore, A. P., Dailey, A. G. and Milne, A. E. 2017. Assessing sampling designs for determining fertilizer practice from yield data. Computers and Electronics in Agriculture. 135 (1 April), pp. 163-174. https://doi.org/10.1016/j.compag.2017.02.002

Milled cereal straw accelerates earthworm (Lumbricus terrestris) growth more than selected organic amendments

A - Papers appearing in refereed journals

Sizmur, T., Martin, E., Wagner, K., Parmentier, E., Watts, C. W. and Whitmore, A. P. 2017. Milled cereal straw accelerates earthworm (Lumbricus terrestris) growth more than selected organic amendments. Applied Soil Ecology. 113 (May), pp. 166-177. https://doi.org/10.1016/j.apsoil.2016.12.006

Cover cropping with oilseed radish (Raphanus sativus) alone does not enhance deep burrowing earthworm (Lumbricus terrestris) midden counts

A - Papers appearing in refereed journals

Stroud, J. L., Irons, D. E., Watts, C. W., Storkey, J., Morris, N. L., Stobart, R. M., Fielding, H. A. and Whitmore, A. P. 2017. Cover cropping with oilseed radish (Raphanus sativus) alone does not enhance deep burrowing earthworm (Lumbricus terrestris) midden counts. Soil & Tillage Research. 165 (January), pp. 11-15. https://doi.org/10.1016/j.still.2016.07.013

Impacts of climate change on national biodiversity population trends

A - Papers appearing in refereed journals

Martay, B., Dennis, E. B., Brereton, T. M., Bell, J. R., Crick, H. Q. P., Morecroft, M. D., Roy, D. B. and Pearce-Higgins, J. W. 2017. Impacts of climate change on national biodiversity population trends. Ecography. 40 (10), p. 1139–1151. https://doi.org/10.1111/ecog.02411

First report of 'Candidatus Liberibacter solanacearum' in the United Kingdom in the psyllid Trioza anthrisci

A - Papers appearing in refereed journals

Sjolund, M. J., Clark, M., Carnegie, M., Greenslade, A. F. C., Ouvrard, D., Highet, F., Sigvald, J. R., Bell, J. R., Arnsdorf, Y. M., Cairns, R. and Kenyon, M. 2017. First report of 'Candidatus Liberibacter solanacearum' in the United Kingdom in the psyllid Trioza anthrisci. New Disease Reports. 36, p. 4. https://doi.org/10.5197/j.2044-0588.2017.036.004

The implications of spatially variable pre-emergence herbicide efficacy for weed management.

A - Papers appearing in refereed journals

Metcalfe, H., Milne, A., Hull, R. I. C., Murdoch, A. J. and Storkey, J. 2017. The implications of spatially variable pre-emergence herbicide efficacy for weed management. Pest Management Science. 74 (3), pp. 755-765. https://doi.org/10.1002/ps.4784

Automating nitrogen fertiliser management for cereals (Auto-N). AHDB Project Report No.561

D1 - Technical reports: non-confidential

Kindred, D. R., Hatley, D., Ginsburg, D., Catalayud, A., Storer, K., Wilson, L., Hockridge, B., Milne, A. E., Marchant, B. P., Miller, P. and Sylvester-Bradley, R. 2016. Automating nitrogen fertiliser management for cereals (Auto-N). AHDB Project Report No.561. Agriculture and Horticulture Development Board.

Lumbricus terrestris middens are biological and chemical hotspots in a minimum tillage arable ecosystem

A - Papers appearing in refereed journals

Stroud, J. L., Irons, D. E., Carter, J. E., Watts, C. W., Murray, P. J., Norris, S. L. and Whitmore, A. P. 2016. Lumbricus terrestris middens are biological and chemical hotspots in a minimum tillage arable ecosystem. Applied Soil Ecology. 105, pp. 31-35. https://doi.org/10.1016/j.apsoil.2016.03.019

Phenological sensitivity to climate across taxa and trophic levels

A - Papers appearing in refereed journals

Thackeray, S. J., Henrys, P. A., Hemming, D., Bell, J. R., Botham, M. S., Burthe, S., Helaouet, P., Johns, D. G., Jones, I. D., Leech, D. I., Mackay, E. B., Massimino, D., Atkinson, S., Bacon, P. J., Brereton, T. M., Carvalho, L., Clutton-Brock, T. H., Duck, C., Edwards, M., Elliott, J. M., Hall, S. J. G., Harrington, R., Pearce-Higgins, J. W., Hoye, T. T., Kruuk, L. E. B., Pemberton, J. M., Sparks, T. H., Thompson, P. M., White, I., Winfield, I. J. and Wanless, S. 2016. Phenological sensitivity to climate across taxa and trophic levels. Nature. 535 (7611), pp. 241-5. https://doi.org/10.1038/nature18608

Lumbricus terrestris abundance is not enhanced after three years of compost amendments on a reduced tillage wheat cultivation conversion

A - Papers appearing in refereed journals

Stroud, J. L., Irons, D., Watts, C. W. and Whitmore, A. P. 2016. Lumbricus terrestris abundance is not enhanced after three years of compost amendments on a reduced tillage wheat cultivation conversion. Applied Soil Ecology. 98, pp. 282-284. https://doi.org/10.1016/j.apsoil.2015.10.007

Monitoring invasive pathogens in plant nurseries for early-detection and to minimise the probability of escape

A - Papers appearing in refereed journals

Alonso Chavez, V., Parnell, S. and Van Den Bosch, F. 2016. Monitoring invasive pathogens in plant nurseries for early-detection and to minimise the probability of escape. Journal of Theoretical Biology. 407, pp. 290-302. https://doi.org/10.1016/j.jtbi.2016.07.041

Distinct respiratory responses of soils to complex organic substrate are governed predominantly by soil architecture and its microbial community

A - Papers appearing in refereed journals

Fraser, F. C., Todman, L. C., Corstanje, R., Deeks, L. K., Harris, J. A., Pawlett, M., Whitmore, A. P. and Ritz, K. 2016. Distinct respiratory responses of soils to complex organic substrate are governed predominantly by soil architecture and its microbial community. Soil Biology and Biochemistry. 103, pp. 493-501. https://doi.org/10.1016/j.soilbio.2016.09.015

On the origin of carbon dioxide released from rewetted soils

A - Papers appearing in refereed journals

Fraser, F. C., Corstanje, R., Deeks, L. K., Harris, J. A., Pawlett, M., Todman, L. C., Whitmore, A. P. and Ritz, K. 2016. On the origin of carbon dioxide released from rewetted soils. Soil Biology and Biochemistry. 101, pp. 1-5. https://doi.org/10.1016/j.soilbio.2016.06.032

150 years of macronutrient change in unfertilized UK ecosystems: Observations vs simulations

A - Papers appearing in refereed journals

Davies, J. A. C., Tipping, E. and Whitmore, A. P. 2016. 150 years of macronutrient change in unfertilized UK ecosystems: Observations vs simulations. Science of the Total Environment. 572 (1), pp. 1485-1495. https://doi.org/10.1016/j.scitotenv.2016.03.055

Population collapse of Lumbricus terrestris in conventional arable cultivations and response to straw applications

A - Papers appearing in refereed journals

Stroud, J. L., Irons, D. E., Watts, C. W., White, R. P., McGrath, S. P. and Whitmore, A. P. 2016. Population collapse of Lumbricus terrestris in conventional arable cultivations and response to straw applications. Applied Soil Ecology. 108 (December), pp. 72-75. https://doi.org/10.1016/j.apsoil.2016.08.002

The unique contribution of Rothamsted to ecological research at large temporal scales

B - Book chapters etc edited externally

Storkey, J., Macdonald, A. J., Bell, J. R., Clark, I. M., Gregory, A. S., Hawkins, N. J., Hirsch, P. R., Todman, L. C. and Whitmore, A. P. 2016. The unique contribution of Rothamsted to ecological research at large temporal scales. in: Dumbrell, A. J., Kordas, R. L. and Woodward, G. (ed.) Advances in Ecological Research 55: Large-Scale Ecology: Model Systems to Global Perspectives Academic Press, Oxford. pp. 3-42

The evolution of fungicide resistance resulting from combinations of foliar-acting systemic seed treatments and foliar-applied fungicides: a modeling analysis

A - Papers appearing in refereed journals

Kitchen, J. L., Van Den Bosch, F., Paveley, N. D., Helps, J. and Van Den Berg, F. 2016. The evolution of fungicide resistance resulting from combinations of foliar-acting systemic seed treatments and foliar-applied fungicides: a modeling analysis. PLOS ONE. 11 (8), p. e0161887. https://doi.org/10.1371/journal.pone.0161887

Boundary line analysis of the effect of water-filled pore space on nitrous oxide emission from cores of arable soil

A - Papers appearing in refereed journals

Lark, R. M. and Milne, A. E. 2016. Boundary line analysis of the effect of water-filled pore space on nitrous oxide emission from cores of arable soil. European Journal of Soil Science. 67 (2), pp. 148-159. https://doi.org/10.1111/ejss.12318

Defining and quantifying the resilience of responses to disturbance: a conceptual and modelling approach from soil science

A - Papers appearing in refereed journals

Todman, L. C., Fraser, F. C., Corstanje, R., Deeks, L. K., Harris, J. A., Pawlett, M., Ritz, K. and Whitmore, A. P. 2016. Defining and quantifying the resilience of responses to disturbance: a conceptual and modelling approach from soil science. Scientific Reports. 6, p. 28426. https://doi.org/10.1038/srep28426

Dose and number of applications that maximise fungicide effective life exemplified by Zymoseptoria tritici on wheat - a model analysis

A - Papers appearing in refereed journals

Van Den Berg, F., Paveley, N. D. and Van Den Bosch, F. 2016. Dose and number of applications that maximise fungicide effective life exemplified by Zymoseptoria tritici on wheat - a model analysis. Plant Pathology. 65 (8), pp. 1380-1389. https://doi.org/10.1111/ppa.12558

The North Wyke Farm Platform: effect of temperate grassland farming systems on soil moisture contents, runoff and associated water quality dynamics

A - Papers appearing in refereed journals

Orr, R. J., Murray, P. J., Eyles, C. J., Blackwell, M. S. A., Cardenas, L. M., Collins, A. L., Dungait, J. A. J., Goulding, K. W. T., Griffith, B. A., Gurr, S. J., Harris, P., Hawkins, J. M. B., Misselbrook, T. H., Rawlings, C. J., Shepherd, A., Sint, H. M., Takahashi, T., Tozer, K. N., Whitmore, A. P., Wu, L. and Lee, M. R. F. 2016. The North Wyke Farm Platform: effect of temperate grassland farming systems on soil moisture contents, runoff and associated water quality dynamics. European Journal of Soil Science. 67 (4), pp. 374-385. https://doi.org/10.1111/ejss.12350

Quantifying interspecific variation in dispersal ability of noctuid moths using an advanced tethered flight technique

A - Papers appearing in refereed journals

Jones, H. B. C., Lim, K. S., Bell, J. R., Hill, J. K. and Chapman, J. W. 2016. Quantifying interspecific variation in dispersal ability of noctuid moths using an advanced tethered flight technique. Ecology and Evolution. 6 (1), pp. 181-190. https://doi.org/10.1002/ece3.1861

Long-term management changes in topsoil and subsoil organic carbon and nitrogen dynamics in a temperate agricultural system

A - Papers appearing in refereed journals

Gregory, A. S., Dungait, J. A. J., Watts, C. W., Bol, R., Dixon, E. R., White, R. P. and Whitmore, A. P. 2016. Long-term management changes in topsoil and subsoil organic carbon and nitrogen dynamics in a temperate agricultural system. European Journal of Soil Science. 67 (4), pp. 421-430. https://doi.org/10.1111/ejss.12359

Designing a sampling scheme to reveal correlations between weeds and soil properties at multiple spatial scales

A - Papers appearing in refereed journals

Metcalfe, H., Milne, A. E., Webster, R., Lark, R. M., Murdoch, A. J. and Storkey, J. 2016. Designing a sampling scheme to reveal correlations between weeds and soil properties at multiple spatial scales. Weed Research. 56 (1), pp. 1-13. https://doi.org/10.1111/wre.12184

Changes in large-scale climate alter spatial synchrony of aphid pests

A - Papers appearing in refereed journals

Sheppard, L. W., Bell, J. R., Harrington, R. and Reuman, D. C. 2016. Changes in large-scale climate alter spatial synchrony of aphid pests. Nature Climate Change. 6, pp. 610-613. https://doi.org/10.1038/NCLIMATE2881

Cassava brown streak disease and the sustainability of a clean seed system

A - Papers appearing in refereed journals

McQuaid, C. F., Sseruwagi, P., Pariyo, A. and Van Den Bosch, F. 2016. Cassava brown streak disease and the sustainability of a clean seed system. Plant Pathology. 65 (2), pp. 299-309. https://doi.org/10.1111/ppa.12453

Organic farming: biodiversity impacts can depend on dispersal characteristics and landscape context

A - Papers appearing in refereed journals

Feber, R., E., Johnson, PJ., Bell, J. R., Chamberlain, D. E., Firbank, L. G., Fuller, R. J., Manley, W., Mathews, F., Norton, L. R., Townsend, M. and Macdonald, D. W. 2015. Organic farming: biodiversity impacts can depend on dispersal characteristics and landscape context. PLOS ONE. 10 (8), p. e0135921. https://doi.org/10.1371/journal.pone.0135921

Nitrous oxide emissions from fertilised UK arable soils: fluxes, emission factors and mitigation

A - Papers appearing in refereed journals

Bell, M. J., Hinton, N., Cloy, J. M., Topp, C. F. E., Rees, R. M., Cardenas, L. M., Scott, T., Webster, C. P., Ashton, R. W., Whitmore, A. P., Williams, J. R., Balshaw, H., Paine, F., Goulding, K. W. T. and Chadwick, D. R. 2015. Nitrous oxide emissions from fertilised UK arable soils: fluxes, emission factors and mitigation. Agriculture, Ecosystems & Environment. 212, pp. 134-147. https://doi.org/10.1016/j.agee.2015.07.003

Designing strategies for epidemic control in a tree nursery: the case of ash dieback in the UK

A - Papers appearing in refereed journals

Alonso Chavez, V., Parnell, S. and Van Den Bosch, F. 2015. Designing strategies for epidemic control in a tree nursery: the case of ash dieback in the UK. Forests. 6 (11), pp. 4135-4145. https://doi.org/10.3390/f6114135

Modelling the impact of environmental changes on grassland systems with SPACSYS

C1 - Edited contributions to conferences/learned societies

Wu, L., Whitmore, A. P. and Bellocchi, G. 2015. Modelling the impact of environmental changes on grassland systems with SPACSYS. Proceedings of the MACSUR International Livestock Modelling and Research Colloquium . Cambridge University Press (CUP) Cambridge. https://doi.org/10.1017/S2040470014000508

Technologies for increasing carbon storage in soil to mitigate climate change

A - Papers appearing in refereed journals

Whitmore, A. P., Kirk, G. J. D. and Rawlins, B. G. 2015. Technologies for increasing carbon storage in soil to mitigate climate change. Soil Use and Management. 31 (Suppl. 1), pp. 62-71. https://doi.org/10.1111/sum.12115

The use of mathematical models to guide fungicide resistance management decisions

B - Book chapters etc edited externally

Van Den Bosch, F., Fraaije, B. A., Oliver, R., Van Den Berg, F. and Paveley, N. 2015. The use of mathematical models to guide fungicide resistance management decisions. in: Hollomon, D. W. and Ishii, H. (ed.) Fungicide resistance in plant pathogens Springer, Tokyo. pp. 49-62

Evidence-based resistance management: a review of existing evidence

B - Book chapters etc edited externally

Van Den Bosch, F., Paveley, N., Fraaije, B. A., Van Den Berg, F. and Oliver, R. 2015. Evidence-based resistance management: a review of existing evidence. in: Hollomon, D. W. and Ishii, H. (ed.) Fungicide resistance in plant pathogens Springer, Tokyo. pp. 63-76

Modelling transmission characteristics and epidemic development of the tospovirus-thrip interaction

A - Papers appearing in refereed journals

Jeger, M. J., Van Den Bosch, F. and Mcroberts, N. 2015. Modelling transmission characteristics and epidemic development of the tospovirus-thrip interaction. Arthropod-Plant Interactions. 9, pp. 107-120. https://doi.org/10.1007/s11829-015-9363-2

Probing the basis of soil resilience

A - Papers appearing in refereed journals

Corstanje, R., Deeks, L. R., Whitmore, A. P., Gregory, A. S. and Ritz, K. 2015. Probing the basis of soil resilience. Soil Use and Management. 31 (Suppl. 1), pp. 72-81. https://doi.org/10.1111/sum.12107

Early detection surveillance for an emerging plant pathogen: a rule of thumb to predict prevalence at first discovery

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Cunniffe, N. J., Alonso Chavez, V. and Van Den Bosch, F. 2015. Early detection surveillance for an emerging plant pathogen: a rule of thumb to predict prevalence at first discovery. Proceedings of the Royal Society of London Series B Biological Sciences. 282, p. 20151478. https://doi.org/10.1098/rspb.2015.1478

A review of the impacts of degradation threats on soil properties in the UK

A - Papers appearing in refereed journals

Gregory, A. S., Ritz, K., McGrath, S. P., Quinton, J. N., Goulding, K. W. T., Jones, R. J. A., Harris, J. A., Bol, R., Wallace, P., Pilgrim, E. S. and Whitmore, A. P. 2015. A review of the impacts of degradation threats on soil properties in the UK. Soil Use and Management. 31 (S1), pp. 1-15. https://doi.org/10.1111/sum.12212

Large-scale migration synchrony between parasitoids and their host

A - Papers appearing in refereed journals

Perez-Rodriguez, J., Shortall, C. R. and Bell, J. R. 2015. Large-scale migration synchrony between parasitoids and their host. Ecological Entomology. 40 (5), pp. 654-659. https://doi.org/10.1111/een.12241

Communicating the uncertainty in estimated greenhouse gas emissions from agriculture

A - Papers appearing in refereed journals

Milne, A. E., Glendining, M. J., Lark, R. M., Perryman, S. A. M., Gordon, T. and Whitmore, A. P. 2015. Communicating the uncertainty in estimated greenhouse gas emissions from agriculture. Journal of Environmental Management. 160, pp. 139-153. https://doi.org/10.1016/j.jenvman.2015.05.034

Simulation of nitrous oxide emissions at field scale using the SPACSYS model

A - Papers appearing in refereed journals

Wu, L., Rees, R. M., Tarsitano, D., Zhang, X., Jones, S. K. and Whitmore, A. P. 2015. Simulation of nitrous oxide emissions at field scale using the SPACSYS model. Science of the Total Environment. 530-531, pp. 76-86. https://doi.org/10.1016/j.scitotenv.2015.05.064

Fungicide resistance risk assessment based on traits associated with the rate of pathogen evolution

A - Papers appearing in refereed journals

Grimmer, M. K., Van Den Bosch, F., Powers, S. J. and Paveley, N. D. 2015. Fungicide resistance risk assessment based on traits associated with the rate of pathogen evolution. Pest Management Science. 71 (2), pp. 207-215. https://doi.org/10.1002/ps.3781

Long-term phenological trends, species accumulation rates, aphid traits and climate: five decades of change in migrating aphids

A - Papers appearing in refereed journals

Bell, J. R., Alderson, L. J., Izera, D., Kruger, T., Parker, S. J., Pickup, J., Shortall, C. R., Taylor, M. S., Verrier, P. J. and Harrington, R. 2015. Long-term phenological trends, species accumulation rates, aphid traits and climate: five decades of change in migrating aphids. Journal of Animal Ecology. 84 (1), pp. 21-34. https://doi.org/10.1111/1365-2656.12282

Exploring the spatial variation in the fertilizer-nitrogen requirement of wheat within fields

A - Papers appearing in refereed journals

Kindred, D. R., Milne, A. E., Webster, R., Marchant, B. P. and Sylvester-Bradley, R. 2015. Exploring the spatial variation in the fertilizer-nitrogen requirement of wheat within fields. The Journal of Agricultural Science. 153 (1), pp. 25-41. https://doi.org/10.1017/S0021859613000919

Exploiting yield maps and soil management zones

A - Papers appearing in refereed journals

Muhammed, S. E., Milne, A. E., Marchant, B. P., Griffin, S. and Whitmore, A. P. 2014. Exploiting yield maps and soil management zones. Proceedings of the International Fertiliser Society. 22, p. poster.

The North Wyke Farm Platform, a national capability for research into sustainability of temperate agricultural grassland management: data and modelling opportunities

C2 - Non-edited contributions to conferences

Harris, P., Griffith, B. A., Shepherd, A., Peukert, S., Hawkins, J. M. B., Elyes, C., Whitmore, A. P., Blackwell, M. S. A., Brazier, R. E., Cardenas, L. M., Wu, L., Dungait, J. A. J., Collins, A. L., Gurr, S. J., Murray, P. J., Goulding, K. W. T. and Orr, R. J. 2014. The North Wyke Farm Platform, a national capability for research into sustainability of temperate agricultural grassland management: data and modelling opportunities. Abstracts Tereno International Conference: from Observation to Prediction in Terrestrial Systems, Bonn, 29 September-2 October 2014 . pp. P2-07

Understanding the scale-dependence of the relations between soil conditions and weed density and the implications for precision management of weeds

C1 - Edited contributions to conferences/learned societies

Metcalfe, H., Milne, A. E., Murdoch, A., Webster, R., Lark, R. M. and Storkey, J. 2014. Understanding the scale-dependence of the relations between soil conditions and weed density and the implications for precision management of weeds. Crop production in Southern Britain: precision decisions for profitable cropping. Aspects of Applied Biology 127 . Association of Applied Biologists (AAB) Wellesbourne Warwick . pp. 165-171

Improving the predictive power of fungicide resistance risk assessment

C1 - Edited contributions to conferences/learned societies

Paveley, N., Grimmer, M., Powers, S. J. and Van Den Bosch, F. 2014. Improving the predictive power of fungicide resistance risk assessment. Dehneetal, H. W. (ed.) Modern fungicides and antifungal compounds, vol. 7 . Deutsche Phytomedizinische Gesellschaft, Braunschweig. pp. 153-160

Exploiting yield maps and soil management zones

G - Articles in popular magazines and other technical publications

Milne, A. E., Marchant, B. P., Whitmore, A. P. and Muhammed, S. E. 2014. Exploiting yield maps and soil management zones. Landmark. 19, pp. 3-4.

Response to 'Potential distribution of citrus black spot in the United States based on climatic conditions', Er et al. 2013

A - Papers appearing in refereed journals

Graham, J. H., Gottwald, T. R., Timmer, L. W., Bergamin Filho, A., Van Den Bosch, F., Irey, M. S., Taylor, E., Magarey, R. D. and Takeuchi, Y. 2014. Response to 'Potential distribution of citrus black spot in the United States based on climatic conditions', Er et al. 2013. European Journal of Plant Pathology. 139, pp. 231-234. https://doi.org/10.1007/s10658-014-0426-5

Detecting land use and land management influences on catchment hydrology by modelling and wavelets

A - Papers appearing in refereed journals

Rust, W., Corstanje, R., Holman, I. P. and Milne, A. E. 2014. Detecting land use and land management influences on catchment hydrology by modelling and wavelets. Journal of Hydrology. 517, pp. 378-389. https://doi.org/10.1016/j.jhydrol.2014.05.052

Mixtures as a fungicide resistance management tactic

A - Papers appearing in refereed journals

Van Den Bosch, F., Paveley, N., Van Den Berg, F., Hobbelen, P. and Oliver, R. 2014. Mixtures as a fungicide resistance management tactic. Phytopathology. 104, pp. 1264-1273. https://doi.org/10.1094/PHYTO-04-14-0121-RVW

Does organic management lead to enhanced soil physical quality?

A - Papers appearing in refereed journals

Papadopoulos, A., Bird, N. R. A., Whitmore, A. P. and Mooney, S. J. 2014. Does organic management lead to enhanced soil physical quality? Geoderma. 213, pp. 435-443. https://doi.org/10.1016/j.geoderma.2013.08.033

Surveillance for invading plant pathogens: the use of epidemic models to quantify performance and optimise survey design

C2 - Non-edited contributions to conferences

Parnell, S. and Van Den Bosch, F. 2014. Surveillance for invading plant pathogens: the use of epidemic models to quantify performance and optimise survey design. Abstracts EFSA/EPPO Joint Workshop on Data Collection and Information Sharing in Plant Health, Parma, 1-3 April 2014 . pp. 5

Nitrous oxide emissions from fertilised UK arable soils: quantification and mitigation

C2 - Non-edited contributions to conferences

Bell, M., Winning, M., Cloy, J., Rees, B., Cardenas, L. M., Donovan, N., Scott, T., Webster, C. P., Whitmore, A. P., Williams, J., Balshaw, H., Paine, F. and Chadwick, D. R. 2014. Nitrous oxide emissions from fertilised UK arable soils: quantification and mitigation. Cordovil, C. M. d. S. (ed.) Abstracts 18th Nitrogen Workshop, Lisbon, 30 June- 3 July 2014 . pp. 375-376

Analysis of uncertainties in the estimates of nitrous oxide and methane emissions in the UK's greenhouse gas inventory for agriculture

A - Papers appearing in refereed journals

Milne, A. E., Glendining, M. J., Bellamy, P., Misselbrook, T. H., Gilhespy, S. L., Rivas Casado, M., Hulin, A., Van Oijen, M. and Whitmore, A. P. 2014. Analysis of uncertainties in the estimates of nitrous oxide and methane emissions in the UK's greenhouse gas inventory for agriculture. Atmospheric Environment. 82, pp. 94-105. https://doi.org/10.1016/j.atmosenv.2013.10.012

Governing principles can guide fungicide-resistance management tactics

A - Papers appearing in refereed journals

Van Den Bosch, F., Oliver, R., Van Den Berg, F. and Paveley, N. 2014. Governing principles can guide fungicide-resistance management tactics. Annual Review of Phytopathology. 52, pp. 175-195. https://doi.org/10.1146/annurev-phyto-102313-050158

Evaluation of a matrix to calculate fungicide resistance risk

A - Papers appearing in refereed journals

Grimmer, M. K., Van Den Bosch, F., Powers, S. J. and Paveley, N. D. 2014. Evaluation of a matrix to calculate fungicide resistance risk. Pest Management Science. 70 (6), pp. 1008-1016. https://doi.org/10.1002/ps.3646

Quantitative resistance can lead to evolutionary changes in traits not targeted by the resistance QTLs

A - Papers appearing in refereed journals

Van Den Berg, F., Lannou, C., Gilligan, C. A. and Van Den Bosch, F. 2014. Quantitative resistance can lead to evolutionary changes in traits not targeted by the resistance QTLs. Evolutionary Applications. 7 (3), pp. 370-380. https://doi.org/10.1111/eva.12130

A generic risk-based surveying method for invading plant pathogens

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Riley, T. and Van Den Bosch, F. 2014. A generic risk-based surveying method for invading plant pathogens. Ecological Applications. 24 (4), pp. 779-790. https://doi.org/10.1890/13-0704.1

Effects of plant pathogens on population dynamics and community composition in grassland ecosystems: two case studies

A - Papers appearing in refereed journals

Jeger, M. J., Salama, N. K. G., Shaw, M. W., Van Den Berg, F. and Van Den Bosch, F. 2014. Effects of plant pathogens on population dynamics and community composition in grassland ecosystems: two case studies. European Journal of Plant Pathology. 138, pp. 513-527. https://doi.org/10.1007/s10658-013-0325-1

The emergence of resistance to fungicides

A - Papers appearing in refereed journals

Hobbelen, P. H. F., Paveley, N. D. and Van Den Bosch, F. 2014. The emergence of resistance to fungicides. PLOS ONE. 9, p. e91910. https://doi.org/10.1371/journal.pone.0091910

An assessment of subsoil organic carbon stocks in England and Wales

A - Papers appearing in refereed journals

Gregory, A. S., Kirk, G. J. D., Keay, C. A., Rawlins, B. G., Wallace, P. and Whitmore, A. P. 2014. An assessment of subsoil organic carbon stocks in England and Wales. Soil Use and Management. 30 (1), pp. 10-22. https://doi.org/10.1111/sum.12085

Accounting for the Economic Risk Caused by Variation in Disease Severity in Fungicide Dose Decisions, Exemplified for Mycosphaerella graminicola on Winter Wheat

A - Papers appearing in refereed journals

Te Beest, D. E., Paveley, N. D., Shaw, M. W. and Van Den Bosch, F. 2013. Accounting for the Economic Risk Caused by Variation in Disease Severity in Fungicide Dose Decisions, Exemplified for Mycosphaerella graminicola on Winter Wheat. Phytopathology. 103 (7), pp. 666-672. https://doi.org/10.1094/PHYTO-05-12-0119-R

Optimal fungicide application timings for disease control are also an effective anti-resistance strategy: a case study for Zymoseptoria tritici (Mycosphaerella graminicola) on wheat

A - Papers appearing in refereed journals

Van Den Berg, F., Van Den Bosch, F. and Paveley, N. D. 2013. Optimal fungicide application timings for disease control are also an effective anti-resistance strategy: a case study for Zymoseptoria tritici (Mycosphaerella graminicola) on wheat. Phytopathology. 103, pp. 1209-1219. https://doi.org/10.1094/PHYTO-03-13-0061-R

Using SPACSYS to analyse the interaction between plant and environment in a systems approach

C2 - Non-edited contributions to conferences

Wu, L. and Whitmore, A. P. 2013. Using SPACSYS to analyse the interaction between plant and environment in a systems approach. Abstracts Workshop on Exploring New Ideas for Trade and Agriculture Model Integration for Assessing the Impacts of Climate Change on Food Security, Haifa, 3-5 March 2013 .

Modelling the path to better soil applied pesticides

C2 - Non-edited contributions to conferences

Sweeney, P., Travis, K., Whalley, W. R., Whitmore, A. P., Dailey, A. G., Wu, L., Van Beinum, W. and Brown, C. 2013. Modelling the path to better soil applied pesticides. Abstracts Conference on Pesticide Behaviour in Soils, Water and Air, York, 2-4 September 2013 .

The usefulness of fungicide mixtures and alternation for delaying the selection for resistance in populations of Mycosphaerella graminicola on winter wheat: a modeling analysis

A - Papers appearing in refereed journals

Hobbelen, P. H. F., Paveley, N. D., Oliver, R. P. and Van Den Bosch, F. 2013. The usefulness of fungicide mixtures and alternation for delaying the selection for resistance in populations of Mycosphaerella graminicola on winter wheat: a modeling analysis. Phytopathology. 103, pp. 690-707. https://doi.org/10.1094/PHYTO-06-12-0142-R

Population metrics for migrating aphids

C2 - Non-edited contributions to conferences

Bell, J. R., Harrington, R., Taylor, M. S. and Verrier, P. J. 2013. Population metrics for migrating aphids. Nordic Association of Agricultural Scientists.

Spatial analysis of gilgai patterns

G - Articles in popular magazines and other technical publications

Webster, R., Milne, A. E. and Lark, R. M. 2013. Spatial analysis of gilgai patterns. Pedometron. 33, pp. 4-9.

Wavelet analysis of the variability of nitrous oxide emissions from soil at decameter to kilometer scales

A - Papers appearing in refereed journals

Milne, A. E., Haskard, K. A., Webster, C. P., Truan, I. A., Goulding, K. W. T. and Lark, R. M. 2013. Wavelet analysis of the variability of nitrous oxide emissions from soil at decameter to kilometer scales. Journal of Environmental Quality. 42, pp. 1070-1079. https://doi.org/10.2134/jeq2012.0007

What do we need to know to enhance the environmental sustainability of agricultural production? A prioritisation of knowledge needs for the UK food system

A - Papers appearing in refereed journals

Dicks, L. V., Bardgett, R. D., Bell, J., Benton, T. G., Booth, A., Bouwman, J., Brown, C., Bruce, A., Burgess, P. J., Butler, S. J., Crute, I. R., Dixon, F., Drummond, C., Freckleton, R. P., Gill, M., Graham, A., Hails, R. S., Hallett, J., Hart, B., Hillier, J., Holland, J. M., Huxley, J., Ingram, J. S. I., King, V., MacMillan, T., Mcgonigle, D. F., McQuaid, C. F., Nevard, T., Norman, S., Norris, K., Pazderka, C., Poonaji, I., Quinn, C. H., Ramsden, S. J., Sinclair, D., Siriwardena, G. M., Vickery, J. A., Whitmore, A. P., Wolmer, W. and Sutherland, W. J. 2013. What do we need to know to enhance the environmental sustainability of agricultural production? A prioritisation of knowledge needs for the UK food system. Sustainability. 5 (7), pp. 3095-3115. https://doi.org/10.3390/su5073095

Durable resistance to crop pathogens: an epidemiological framework to predict risk under uncertainty

A - Papers appearing in refereed journals

Lo Iacono, G., Van Den Bosch, F. and Gilligan, C. A. 2013. Durable resistance to crop pathogens: an epidemiological framework to predict risk under uncertainty. PLOS Computational Biology. 9, p. e1002870. https://doi.org/10.1371/journal.pcbi.1002870

The effect of Horsfall-Barratt category size on the accuracy and reliability of estimates of pecan scab severity

A - Papers appearing in refereed journals

Bock, C. H., Wood, B. W., Van Den Bosch, F., Parnell, S. and Gottwald, T. R. 2013. The effect of Horsfall-Barratt category size on the accuracy and reliability of estimates of pecan scab severity. Plant Disease. 97 (6), pp. 797-806. https://doi.org/10.1094/PDIS-08-12-0781-RE

Modification of the RothC model for simulations of soil organic C dynamics in dryland regions

A - Papers appearing in refereed journals

Farina, R., Coleman, K. and Whitmore, A. P. 2013. Modification of the RothC model for simulations of soil organic C dynamics in dryland regions. Geoderma. 200-201, pp. 18-30. https://doi.org/10.1016/j.geoderma.2013.01.021

High levels of auto-infection in plant pathogens favour short latent periods: a theoretical approach

A - Papers appearing in refereed journals

Van Den Berg, F., Gaucel, S., Lannou, C., Gilligan, C. A. and Van Den Bosch, F. 2013. High levels of auto-infection in plant pathogens favour short latent periods: a theoretical approach. Evolutionary Ecology. 27, pp. 409-428. https://doi.org/10.1007/s10682-012-9602-2

Predicting insect migration density and speed in the daytime convective boundary layer

A - Papers appearing in refereed journals

Bell, J. R., Aralimarad, P., Lim, K. S. and Chapman, J. W. 2013. Predicting insect migration density and speed in the daytime convective boundary layer. PLOS ONE. 8, p. e54202. https://doi.org/10.1371/journal.pone.0054202

Shared influence of pathogen and host genetics on a trade-off between latent period and spore production capacity in the wheat pathogen, Puccinia triticina

A - Papers appearing in refereed journals

Pariaud, B., Van Den Berg, F., Van Den Bosch, F., Powers, S. J., Kaltz, O. and Lannou, C. 2013. Shared influence of pathogen and host genetics on a trade-off between latent period and spore production capacity in the wheat pathogen, Puccinia triticina. Evolutionary Applications. 6 (2), pp. 303-312. https://doi.org/10.1111/eva.12000

Intraguild predation in winter wheat: prey choice by a common epigeal carabid consuming spiders

A - Papers appearing in refereed journals

Davey, J. S., Vaughan, I. P., King, R. A., Bell, J. R., Bohan, D. A., Bruford, M. W., Holland, J. M. and Symondson, W. O. C. 2013. Intraguild predation in winter wheat: prey choice by a common epigeal carabid consuming spiders. Journal of Applied Ecology. 50 (1), pp. 271-279. https://doi.org/10.1111/1365-2664.12008

The effect of the dose rate of a fungicide on the emergence of resistance

C2 - Non-edited contributions to conferences

Hobbelen, P. H., Paveley, N. D. and Van Den Bosch, F. 2012. The effect of the dose rate of a fungicide on the emergence of resistance. American Phytopathological Society (APS).

The usefulness of concurrent, alternating, and mixture use of two high-risk fungicides as resistance management strategy

C2 - Non-edited contributions to conferences

Hobbelen, P. H., Paveley, N. D. and Van Den Bosch, F. 2012. The usefulness of concurrent, alternating, and mixture use of two high-risk fungicides as resistance management strategy. American Phytopathological Society (APS).

Nutrient management in support of environmental and agricultural sustainability

A - Papers appearing in refereed journals

Whitmore, A. P., Goulding, K. W. T., Glendining, M. J., Dailey, A. G., Coleman, K. and Powlson, D. S. 2012. Nutrient management in support of environmental and agricultural sustainability. Sustainability. 4 (10), pp. 2513-2524. https://doi.org/10.3390/su4102513

Carbon sequestration in soils - has the concept been over-sold?

C2 - Non-edited contributions to conferences

Powlson, D. S., Whitmore, A. P. and Goulding, K. W. T. 2012. Carbon sequestration in soils - has the concept been over-sold? Abstracts BSSS Annual Meeting: Soil Science and Food Security, Loughborough, 4-5 September 2012 .

Suction sampling as a significant source of error in molecular analysis of predator diets

A - Papers appearing in refereed journals

King, R. A., Davey, J. S., Bell, J. R., Read, D. S., Bohan, D. A. and Symondson, W. O. C. 2012. Suction sampling as a significant source of error in molecular analysis of predator diets. Bulletin of Entomological Research. 102, pp. 261-266. https://doi.org/10.1017/S0007485311000575

Population dynamics of a non-cultivated biennial plant Tragopogon pratensis infected by the autoecious demicyclic rust fungus Puccinia hysterium

A - Papers appearing in refereed journals

Salama, N. K. G., Van Den Bosch, F., Edwards, G. R., Heard, M. S. and Jeger, M. J. 2012. Population dynamics of a non-cultivated biennial plant Tragopogon pratensis infected by the autoecious demicyclic rust fungus Puccinia hysterium. Fungal Ecology. 5, pp. 530-542. https://doi.org/10.1016/j.funeco.2011.12.009

Estimating the incidence of an epidemic when it is first discovered and the design of early detection monitoring

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Gilks, W. R. and Van Den Bosch, F. 2012. Estimating the incidence of an epidemic when it is first discovered and the design of early detection monitoring. Journal of Theoretical Biology. 305, pp. 30-36. https://doi.org/10.1016/j.jtbi.2012.03.009

An improved regulatory sampling method for mapping and representing plant disease from a limited number of samples

A - Papers appearing in refereed journals

Luo, W., Pietravalle, S., Parnell, S., Van Den Bosch, F., Gottwald, T. R., Irey, M. S. and Parker, S. R. 2012. An improved regulatory sampling method for mapping and representing plant disease from a limited number of samples. Epidemics. 4 (2), pp. 68-77. https://doi.org/10.1016/j.epidem.2012.02.001

The evolution of plant pathogens in response to host resistance: factors affecting the gain from deployment of qualitative and quantitative resistance

A - Papers appearing in refereed journals

Lo Iacono, G., Van Den Bosch, F. and Paveley, N. 2012. The evolution of plant pathogens in response to host resistance: factors affecting the gain from deployment of qualitative and quantitative resistance. Journal of Theoretical Biology. 304, pp. 152-163. https://doi.org/10.1016/j.jtbi.2012.03.033

Root respiration of barley in a semiarid Mediterranean agroecosystem: field and modelling approaches

A - Papers appearing in refereed journals

Morell, F. J., Whitmore, A. P., Alvaro-Fuentes, J., Lampurlanes, J. and Cantero-Martinez, C. 2012. Root respiration of barley in a semiarid Mediterranean agroecosystem: field and modelling approaches. Plant and Soil. 351, pp. 135-147. https://doi.org/10.1007/s11104-011-0938-0

Spatially explicit modelling of changes in soil organic C in agricultural soils in Italy, 2001-2010: potential for compost amendment

A - Papers appearing in refereed journals

Mondini, C., Coleman, K. and Whitmore, A. P. 2012. Spatially explicit modelling of changes in soil organic C in agricultural soils in Italy, 2001-2010: potential for compost amendment. Agriculture, Ecosystems & Environment. 153, pp. 24-32. https://doi.org/10.1016/j.agee.2012.02.020

Commentary: Developing sustainable farming systems by valuing ecosystem services

A - Papers appearing in refereed journals

Goulding, K. W. T. and Whitmore, A. P. 2012. Commentary: Developing sustainable farming systems by valuing ecosystem services. International Journal of Agricultural Sustainability. 10, pp. 5-7. https://doi.org/10.1080/14735903.2012.652378

Changes in soil organic carbon and climate change - Application of the RothC model in agro-silvo-pastoral Mediterranean systems

A - Papers appearing in refereed journals

Francaviglia, R., Coleman, K., Whitmore, A. P., Doro, L., Urracci, G., Rubino, M. and Ledda, L. 2012. Changes in soil organic carbon and climate change - Application of the RothC model in agro-silvo-pastoral Mediterranean systems. Agricultural Systems. 112, pp. 48-54. https://doi.org/10.1016/j.agsy.2012.07.001

Time-dependent infectivity and flexible latent and infectious periods in compartmental models of plant disease

A - Papers appearing in refereed journals

Cunniffe, N. J., Stutt, R. O. J. H., Van Den Bosch, F. and Gilligan, C. A. 2012. Time-dependent infectivity and flexible latent and infectious periods in compartmental models of plant disease. Phytopathology. 102, pp. 365-380. https://doi.org/10.1094/PHYTO-12-10-0338

Using the NAG library to help analyse the variation in data from the environment

G - Articles in popular magazines and other technical publications

Milne, A. E. and Lark, R. M. 2012. Using the NAG library to help analyse the variation in data from the environment. NAG News. 110, p. http://www.nag.co.uk/IndustryArticles/nag_for_environment_research.pdf.

Generalist predators disrupt parasitoid aphid control by direct and coincidental intraguild predation

A - Papers appearing in refereed journals

Traugott, M., Bell, J. R., Raso, L., Sint, D. and Symondson, W. O. C. 2012. Generalist predators disrupt parasitoid aphid control by direct and coincidental intraguild predation. Bulletin of Entomological Research. 102 (2), pp. 239-247. https://doi.org/10.1017/S0007485311000551

Climatic change is advancing the phenology of moth species in Ireland

A - Papers appearing in refereed journals

O'Neill, B. F., Bond, K., Tyner, A., Sheppard, R., Bryant, T., Chapman, J. W., Bell, J. R. and Donnelly, A. 2012. Climatic change is advancing the phenology of moth species in Ireland. Entomologia Experimentalis et Applicata. 143 (1), pp. 74-88. https://doi.org/10.1111/j.1570-7458.2012.01234.x

Advances in the understanding of nutrient dynamics and management in UK agriculture

A - Papers appearing in refereed journals

Dungait, J. A. J., Cardenas, L. M., Blackwell, M. S. A., Wu, L., Withers, P. J. A., Chadwick, D. R., Bol, R., Murray, P. J., Macdonald, A. J., Whitmore, A. P. and Goulding, K. W. T. 2012. Advances in the understanding of nutrient dynamics and management in UK agriculture. Science of the Total Environment. 434 (15 September), pp. 39-50. https://doi.org/10.1016/j.scitotenv.2012.04.029

Seasonal migration to high latitudes results in major reproductive benefits in an insect

A - Papers appearing in refereed journals

Chapman, J. W., Bell, J. R., Burgin, L. E., Reynolds, D. R., Pettersson, L. B., Hill, J. K., Bonsall, M. B. and Thomas, J. A. 2012. Seasonal migration to high latitudes results in major reproductive benefits in an insect. Proceedings of the National Academy of Sciences. 109 (37), pp. 14924-14929. https://doi.org/10.1073/pnas.1207255109

The effect of agricultural land use on the nature and dynamics of subsoil

C2 - Non-edited contributions to conferences

Gregory, A. S., Dungait, J. A. J., Dixon, E. R., Bol, R. and Whitmore, A. P. 2012. The effect of agricultural land use on the nature and dynamics of subsoil. Abstracts 4th International Congress Eurosoil, Bari, 2-6 July 2012 . pp. 387

Soil organic matter turnover is governed by accessibility not recalcitrance

A - Papers appearing in refereed journals

Dungait, J. A. J., Hopkins, D. W., Gregory, A. S. and Whitmore, A. P. 2012. Soil organic matter turnover is governed by accessibility not recalcitrance. Global Change Biology. 18 (6), pp. 1781-1796. https://doi.org/10.1111/j.1365-2486.2012.02665.x

Shortcomings in wheat yield predictions

A - Papers appearing in refereed journals

Semenov, M. A., Mitchell, R. A. C., Whitmore, A. P., Hawkesford, M. J., Parry, M. A. J. and Shewry, P. R. 2012. Shortcomings in wheat yield predictions. Nature Climate Change. 2, pp. 380-382. https://doi.org/10.1038/nclimate1511

Controlling annual weeds in cereals by deploying crop rotation at the landscape scale: Avena sterilis as an example

A - Papers appearing in refereed journals

Gonzalez-Diaz, L., Van Den Berg, F., Van Den Bosch, F. and Gonzalez-Andujar, J. L. 2012. Controlling annual weeds in cereals by deploying crop rotation at the landscape scale: Avena sterilis as an example. Ecological Applications. 22 (3), pp. 982-992. https://doi.org/10.1890/11-1079.1

Putting the brakes on a cycle: bottom-up effects damp cycle amplitude

A - Papers appearing in refereed journals

Bell, J. R., Burkness, E. C., Milne, A. E., Onstad, D. W., Abrahamson, M., Hamilton, K. L. and Hutchison, W. D. 2012. Putting the brakes on a cycle: bottom-up effects damp cycle amplitude. Ecology Letters. 15 (4), pp. 310-318. https://doi.org/10.1111/j.1461-0248.2011.01739.x

The trait and host plant ecology of aphids and their distribution and abundance in the United Kingdom

A - Papers appearing in refereed journals

Bell, J. R., Taylor, M. S., Shortall, C. R., Welham, S. J. and Harrington, R. 2012. The trait and host plant ecology of aphids and their distribution and abundance in the United Kingdom. Global Ecology and Biogeography. 21 (4), pp. 405-415. https://doi.org/10.1111/j.1466-8238.2011.00685.x

An assessment of a new model of dynamic fragmentation of soil with test data

A - Papers appearing in refereed journals

Gregory, A. S., Bird, N. R. A., Watts, C. W. and Whitmore, A. P. 2012. An assessment of a new model of dynamic fragmentation of soil with test data. Soil & Tillage Research. 120, pp. 61-68. https://doi.org/10.1016/j.still.2011.11.007

The potential to increase soil carbon stocks through reduced tillage or organic material additions in England and Wales: a case study

A - Papers appearing in refereed journals

Powlson, D. S., Bhogal, A., Chambers, B. J., Coleman, K., Macdonald, A. J., Goulding, K. W. T. and Whitmore, A. P. 2012. The potential to increase soil carbon stocks through reduced tillage or organic material additions in England and Wales: a case study. Agriculture, Ecosystems & Environment. 146, pp. 23-33. https://doi.org/10.1016/j.agee.2011.10.004

Spatial multivariate classification of an arable field into compact management zones based on past crop yields

A - Papers appearing in refereed journals

Milne, A. E., Webster, R., Ginsburg, D. and Kindred, D. 2012. Spatial multivariate classification of an arable field into compact management zones based on past crop yields. Computers and Electronics in Agriculture. 80, pp. 17-30. https://doi.org/10.1016/j.compag.2011.10.007

A stochastic optimization method to estimate the spatial distribution of a pathogen from a sample

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Irey, M. S., Luo, W. and Van Den Bosch, F. 2011. A stochastic optimization method to estimate the spatial distribution of a pathogen from a sample. Phytopathology. 101 (10), pp. 1184-1190. https://doi.org/10.1094/PHYTO-11-10-0311

Interactions in a host plant-virus-vector-parasitoid system: modelling the consequences for virus transmission and disease dynamics

A - Papers appearing in refereed journals

Jeger, M. J., Chen, Z., Powell, G., Hodge, S. and Van Den Bosch, F. 2011. Interactions in a host plant-virus-vector-parasitoid system: modelling the consequences for virus transmission and disease dynamics. Virus Research. 159, pp. 183-193. https://doi.org/10.1016/j.virusres.2011.04.027

Exploring the variation in soil saturated hydraulic conductivity under a tropical rainforest using the wavelet transform

A - Papers appearing in refereed journals

Hassler, S. K., Lark, R. M., Milne, A. E. and Elsenbeer, H. 2011. Exploring the variation in soil saturated hydraulic conductivity under a tropical rainforest using the wavelet transform. European Journal of Soil Science. 62 (6), pp. 891-901. https://doi.org/10.1111/j.1365-2389.2011.01400.x

Wavelet analysis of soil variation at nanometre- to micrometre-scales: an example of organic carbon content in a micro-aggregate

A - Papers appearing in refereed journals

Milne, A. E., Lehmann, J., Solomon, D. and Lark, R. M. 2011. Wavelet analysis of soil variation at nanometre- to micrometre-scales: an example of organic carbon content in a micro-aggregate. European Journal of Soil Science. 62 (4), pp. 617-628. https://doi.org/10.1111/j.1365-2389.2011.01352.x

Modelling virus- and host-limitation in vectored plant disease epidemics

A - Papers appearing in refereed journals

Jeger, M. J., Van Den Bosch, F. and Madden, L. V. 2011. Modelling virus- and host-limitation in vectored plant disease epidemics. Virus Research. 159, pp. 215-222. https://doi.org/10.1016/j.virusres.2011.05.012

Delaying selection for fungicide insensitivity by mixing fungicides at a low and high risk of resistance development: a modeling analysis

A - Papers appearing in refereed journals

Hobbelen, P. H. F., Paveley, N. D. and Van Den Bosch, F. 2011. Delaying selection for fungicide insensitivity by mixing fungicides at a low and high risk of resistance development: a modeling analysis. Phytopathology. 101, pp. 1224-1233. https://doi.org/10.1094/PHYTO-10-10-0290

A comparison of soil and water properties in organic and conventional farming systems in England

A - Papers appearing in refereed journals

Hathaway-Jenkins, L. J., Sakrabani, R., Pearce, B., Whitmore, A. P. and Godwin, R. J. 2011. A comparison of soil and water properties in organic and conventional farming systems in England. Soil Use and Management. 27 (2), pp. 133-142. https://doi.org/10.1111/j.1475-2743.2011.00335.x

The dose rate debate: does the risk of fungicide resistance increase or decrease with dose?

A - Papers appearing in refereed journals

Van Den Bosch, F., Paveley, N., Shaw, M., Hobbelen, P. and Oliver, R. 2011. The dose rate debate: does the risk of fungicide resistance increase or decrease with dose? Plant Pathology. 60 (4), pp. 597-606. https://doi.org/10.1111/j.1365-3059.2011.02439.x

Review of the evidence base for the status and change of soil carbon below 15cm from the soil surface in England and Wales (Report on Sub-project 3 of DEFRA Project SP1106)

D1 - Technical reports: non-confidential

Gregory, A. S., Whitmore, A. P., Kirk, G. J. D., Rawlins, B. G., Ritz, K. and Wallace, P. 2011. Review of the evidence base for the status and change of soil carbon below 15cm from the soil surface in England and Wales (Report on Sub-project 3 of DEFRA Project SP1106). Department for Environment, Food and Rural Affairs (DEFRA).

Spatial sampling to detect an invasive pathogen outside of an eradication zone

A - Papers appearing in refereed journals

Demon, I., Cunniffe, N. J., Marchant, B. P., Gilligan, C. A. and Van Den Bosch, F. 2011. Spatial sampling to detect an invasive pathogen outside of an eradication zone. Phytopathology. 101 (6), pp. 725-731. https://doi.org/10.1094/PHYTO-05-09-0120

Wavelet analysis of the correlations between soil properties and potential nitrous oxide emission at farm and landscape scales

A - Papers appearing in refereed journals

Milne, A. E., Haskard, K. A., Webster, C. P., Truan, I. A., Goulding, K. W. T. and Lark, R. M. 2011. Wavelet analysis of the correlations between soil properties and potential nitrous oxide emission at farm and landscape scales. European Journal of Soil Science. 62 (3), pp. 467-478. https://doi.org/10.1111/j.1365-2389.2011.01361.x

Derivation and testing of a model to predict selection for fungicide resistance

A - Papers appearing in refereed journals

Hobbelen, P. H. F., Paveley, N. D., Fraaije, B. A., Lucas, J. A. and Van Den Bosch, F. 2011. Derivation and testing of a model to predict selection for fungicide resistance. Plant Pathology. 60 (2), pp. 304-313. https://doi.org/10.1111/j.1365-3059.2010.02380.x

Periodic host absence can select for higher or lower parasite transmission rates

A - Papers appearing in refereed journals

Van Den Berg, F., Bacaer, N., Metz, J. A. J., Lannou, C. and Van Den Bosch, F. 2011. Periodic host absence can select for higher or lower parasite transmission rates. Evolutionary Ecology. 25, pp. 121-137. https://doi.org/10.1007/s10682-010-9387-0

Soil management in relation to sustainable agriculture and ecosystem services

A - Papers appearing in refereed journals

Powlson, D. S., Gregory, P. J., Whalley, W. R., Quinton, J. N., Hopkins, D. W., Whitmore, A. P., Hirsch, P. R. and Goulding, K. W. T. 2011. Soil management in relation to sustainable agriculture and ecosystem services. Food Policy. 36, pp. S72-S87. https://doi.org/10.1016/j.foodpol.2010.11.025

Soil organic matters

A - Papers appearing in refereed journals

Powlson, D. S., Brookes, P. C., Whitmore, A. P., Goulding, K. W. T. and Hopkins, D. W. 2011. Soil organic matters. European Journal of Soil Science. 62 (1), pp. 1-4. https://doi.org/10.1111/j.1365-2389.2010.01338.x

Estimating soil strength in the rooting zone of wheat

A - Papers appearing in refereed journals

Whitmore, A. P., Whalley, W. R., Bird, N. R. A., Watts, C. W. and Gregory, A. S. 2011. Estimating soil strength in the rooting zone of wheat. Plant and Soil. 339, pp. 363-375. https://doi.org/10.1007/s11104-010-0588-7

Implications for soil properties of removing cereal straw: results from long-term studies

A - Papers appearing in refereed journals

Powlson, D. S., Glendining, M. J., Coleman, K. and Whitmore, A. P. 2011. Implications for soil properties of removing cereal straw: results from long-term studies. Agronomy Journal. 103, pp. 279-287. https://doi.org/10.2134/agronj2010.0146s

Soil carbon sequestration to mitigate climate change: a critical re-examination to identify the true and the false

A - Papers appearing in refereed journals

Powlson, D. S., Whitmore, A. P. and Goulding, K. W. T. 2011. Soil carbon sequestration to mitigate climate change: a critical re-examination to identify the true and the false. European Journal of Soil Science. 62 (1), pp. 42-55. https://doi.org/10.1111/j.1365-2389.2010.01342.x

Pedotransfer functions for estimating total soil nitrogen up to the global scale

A - Papers appearing in refereed journals

Glendining, M. J., Dailey, A. G., Powlson, D. S., Richter, G. M., Catt, J. A. and Whitmore, A. P. 2011. Pedotransfer functions for estimating total soil nitrogen up to the global scale. European Journal of Soil Science. 62 (1), pp. 13-22. https://doi.org/10.1111/j.1365-2389.2010.01336.x

Effects of recent and accumulated livestock manure carbon additions on soil fertility and quality

A - Papers appearing in refereed journals

Bhogal, A., Nicholson, F. A., Young, I., Sturrock, C., Whitmore, A. P. and Chambers, B. J. 2011. Effects of recent and accumulated livestock manure carbon additions on soil fertility and quality. European Journal of Soil Science. 62 (1), pp. 174-181. https://doi.org/10.1111/j.1365-2389.2010.01319.x

Multiplex reactions for the molecular detection of predation on pest and nonpest invertebrates in agroecosystems

A - Papers appearing in refereed journals

King, R. A., Moreno-Ripoll, R., Agusti, N., Shayler, S. P., Bell, J. R., Bohan, D. A. and Symondson, W. O. C. 2011. Multiplex reactions for the molecular detection of predation on pest and nonpest invertebrates in agroecosystems. Molecular Ecology Resources. 11 (2), pp. 370-373. https://doi.org/10.1111/j.1755-0998.2010.02913.x

Periodicity in Host Availability Does Not Account for Evolutionary Branching as Observed in Many Plant Pathogens: An Application to Gaeumannomyces graminis var. tritici (take-all)

A - Papers appearing in refereed journals

Van Den Berg, F., Gilligan, C. A., Bailey, D. J. and Van Den Bosch, F. 2010. Periodicity in Host Availability Does Not Account for Evolutionary Branching as Observed in Many Plant Pathogens: An Application to Gaeumannomyces graminis var. tritici (take-all). Phytopathology. 100 (11), pp. 1169-1175. https://doi.org/10.1094/PHYTO-10-09-0282

The usefulness of mixtures of a single-site and a multi-site fungicide as resistance management strategy

C2 - Non-edited contributions to conferences

Hobbelen, P. H., Paveley, N. D. and Van Den Bosch, F. 2010. The usefulness of mixtures of a single-site and a multi-site fungicide as resistance management strategy.

Derivation and validation of a model to predict selection for fungicide resistance

C2 - Non-edited contributions to conferences

Hobbelen, P. H., Paveley, N. D., Fraaije, B. A., Lucas, J. A. and Van Den Bosch, F. 2010. Derivation and validation of a model to predict selection for fungicide resistance.

Estimating changes in Scottish soil carbon stocks using ECOSSE. II. Application

A - Papers appearing in refereed journals

Smith, J., Gottschalk, P., Bellarby, J., Chapman, S., Lilly, A., Towers, W., Bell, J., Coleman, K., Nayak, D., Richards, M., Hillier, J., Flynn, H., Wattenbach, M., Aitkenhead, M., Yeluripati, J., Farmer, J., Milne, R., Thomson, A., Evans, C., Whitmore, A. P., Falloon, P. and Smith, P. 2010. Estimating changes in Scottish soil carbon stocks using ECOSSE. II. Application. Climate Research. 45, pp. 193-205. https://doi.org/10.3354/cr00902

Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties

A - Papers appearing in refereed journals

Smith, J., Gottschalk, P., Bellarby, J., Chapman, S., Lilly, A., Towers, W., Bell, J., Coleman, K., Nayak, D., Richards, M., Hillier, J., Flynn, H., Wattenbach, M., Aitkenhead, M., Yeluripati, J., Farmer, J., Milne, R., Thomson, A., Evans, C., Whitmore, A. P., Falloon, P. and Smith, P. 2010. Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties. Climate Research. 45, pp. 179-192. https://doi.org/10.3354/cr00899

Soil carbon sequestration for mitigating climate change: distinguishing the genuine from the imaginary

B - Book chapters etc edited externally

Powlson, D. S., Whitmore, A. P. and Goulding, K. W. T. 2010. Soil carbon sequestration for mitigating climate change: distinguishing the genuine from the imaginary. in: Hillel, D. and Rosenzweig, C. (ed.) Handbook of climate change and agroecosystems Imperial College Press, London. pp. 393-402

Trophic level asynchrony in rates of phenological change for marine, freshwater and terrestrial environments

A - Papers appearing in refereed journals

Thackeray, S. J., Sparks, T. H., Frederiksen, M., Burthes, S., Bacon, P. J., Bell, J. R., Botham, M. C., Brereton, T. M., Bright, P. W., Carvalho, L., Clutton-Brock, T., Dawson, A., Edwards, M., Elliott, J. M., Harrington, R., Johns, D., Jones, I. D., Jones, J. T., Leech, D. I., Roy, D. B., Scott, W. A., Smith, M., Smithers, R. J., Winfield, I. J. and Wanless, S. 2010. Trophic level asynchrony in rates of phenological change for marine, freshwater and terrestrial environments. Global Change Biology. 16 (12), pp. 3304-3313. https://doi.org/10.1111/j.1365-2486.2010.02165.x

Optimal weed management in crop rotations: incorporating economics is crucial

A - Papers appearing in refereed journals

Van Den Berg, F., Gilligan, C. A., Gerdessen, J. C., Gregoire, L. A. H. and Van Den Bosch, F. 2010. Optimal weed management in crop rotations: incorporating economics is crucial. Weed Research. 50 (5), pp. 413-424. https://doi.org/10.1111/j.1365-3180.2010.00787.x

Investigating the effect of previous treatments on wheat biomass over multiple spatial frequencies

A - Papers appearing in refereed journals

Milne, A. E., Castellanos, M. T., Cartagena, M. C., Tarquis, A. M. and Lark, R. M. 2010. Investigating the effect of previous treatments on wheat biomass over multiple spatial frequencies. Biogeosciences. 7, pp. 2739-2747. https://doi.org/10.5194/bg-7-2739-2010

Some consequences of using the Horsfall-Barratt scale for hypothesis testing

A - Papers appearing in refereed journals

Bock, C. H., Gottwald, T. R., Parker, P. E., Ferrandino, F., Welham, S. J., Van Den Bosch, F. and Parnell, S. 2010. Some consequences of using the Horsfall-Barratt scale for hypothesis testing. Phytopathology. 100 (10), pp. 1030-1041. https://doi.org/10.1094/PHYTO-08-09-0220

A model to simulate yield losses in winter wheat caused by weeds, for use in a weed management decision support system

A - Papers appearing in refereed journals

Benjamin, L. R., Milne, A. E., Parsons, D. J. and Lutman, P. J. W. 2010. A model to simulate yield losses in winter wheat caused by weeds, for use in a weed management decision support system. Crop Protection. 29, pp. 1264-1273. https://doi.org/10.1016/j.cropro.2010.07.015

Prey choice by carabid beetles feeding on an earthworm community analysed using species- and lineage-specific PCR primers

A - Papers appearing in refereed journals

King, A. R., Vaughan, I. P., Bell, J. R., Bohan, D. A. and Symondson, W. O. C. 2010. Prey choice by carabid beetles feeding on an earthworm community analysed using species- and lineage-specific PCR primers. Molecular Ecology. 19 (8), pp. 1721-1732. https://doi.org/10.1111/j.1365-294X.2010.04602.x

Spectral and wavelet analysis of gilgai patterns from air photography

A - Papers appearing in refereed journals

Milne, A. E., Webster, R. and Lark, R. M. 2010. Spectral and wavelet analysis of gilgai patterns from air photography. Australian journal of soil research. 48, pp. 309-325. https://doi.org/10.1071/SR09189

The effect of landscape pattern on the optimal eradication zone of an invading epidemic

A - Papers appearing in refereed journals

Parnell, S., Gottwald, T. R., Gilligan, C. A., Cunniffe, N. J. and Van Den Bosch, F. 2010. The effect of landscape pattern on the optimal eradication zone of an invading epidemic. Phytopathology. 100 (7), pp. 638-644. https://doi.org/10.1094/PHYTO-100-7-0638

Evolutionary bi-stability in pathogen transmission mode

A - Papers appearing in refereed journals

Van Den Bosch, F., Fraaije, B. A., Van Den Berg, F. and Shaw, M. W. 2010. Evolutionary bi-stability in pathogen transmission mode. Proceedings of the Royal Society of London Series B Biological Sciences. 277, pp. 1735-1742. https://doi.org/10.1098/rspb.2009.2211

Spatial co-occurrence networks predict the feeding histories of polyphagous arthropod predators at field scales

A - Papers appearing in refereed journals

Bell, J. R., King, R. A., Bohan, D. A. and Wymondson, W. O. C. 2010. Spatial co-occurrence networks predict the feeding histories of polyphagous arthropod predators at field scales. Ecography. 33 (1), pp. 64-72. https://doi.org/10.1111/j.1600-0587.2009.06046.x

BICCO-Net: the Biodiversity Impacts of Climate Change Observation Network

C2 - Non-edited contributions to conferences

Chamberlain, D., Eglington, S., Haysom, K., Roy, D., Willis, S., Broome, A., Dines, T. and Bell, J. R. 2009. BICCO-Net: the Biodiversity Impacts of Climate Change Observation Network. Abstracts ZSL Biodiversity Monitoring and Conservation Symposium, London, 18-19 June 2009 .

The GAMes aphids play

C2 - Non-edited contributions to conferences

Bell, J. R., Harrington, R., Welham, S. J., Clark, S. J. and Pickup, J. 2009. The GAMes aphids play. Abstracts 8th International Symposium on Aphids, Catania, 8-12 June 2009 .

Discontinuous host growth and the evolution of plant pathogens

C2 - Non-edited contributions to conferences

Van Den Berg, F. and Van Den Bosch, F. 2009. Discontinuous host growth and the evolution of plant pathogens. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859609990359

Theoretical evaluation of pyramided and sequential deployment of resistance genes using a yield-related measure of durability of cultivar resistance

C2 - Non-edited contributions to conferences

Demon, I. and Van Den Bosch, F. 2009. Theoretical evaluation of pyramided and sequential deployment of resistance genes using a yield-related measure of durability of cultivar resistance. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859609990359

Efficiency of soil N use by arable crops

C2 - Non-edited contributions to conferences

Macdonald, A. J., Knight, S. M., Glendining, M. J., Whitmore, A. P., Dailey, A. G., Goulding, K. W. T., Sinclair, A. H. and Rees, R. M. 2009. Efficiency of soil N use by arable crops. Abstracts 16th Nitrogen Workshop, Turin, 28 June-1 July 2009 . pp. 233-234

Potential for soil carbon sequestration, but with a full greenhouse gas budget

C1 - Edited contributions to conferences/learned societies

Goulding, K. W. T., Powlson, D. S. and Whitmore, A. P. 2009. Potential for soil carbon sequestration, but with a full greenhouse gas budget. Currie, L. D. and Lindsay, C. L. (ed.) Nutrient Management in a Rapidly Changing World: Proceedings 22nd Annual Workshop of the Fertilizer and Lime Research Centre Massey University, Palmerston North, 11-12 February 2009. . Fertilizer and Lime Research Centre, Massey University. pp. 7-15

Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. Project summary for EU Cordis

C2 - Non-edited contributions to conferences

Evans, N., Fitt, B. D. L., Huang, Y-J., Van Den Bosch, F., Demon, I. and Gladders, P. 2009. Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. Project summary for EU Cordis. pp. 4pp

The wavelet packet transform: a technique for investigating temporal variation of river water solutes

A - Papers appearing in refereed journals

Milne, A. E., Macleod, C. J. A., Haygarth, P. M., Hawkins, J. M. B. and Lark, R. M. 2009. The wavelet packet transform: a technique for investigating temporal variation of river water solutes. Journal of Hydrology. 379 (1-2), pp. 1-19. https://doi.org/10.1016/j.jhydrol.2009.09.038

Estimating the spatial distribution of a plant disease epidemic from a sample

C2 - Non-edited contributions to conferences

Parnell, S. R., Gottwald, T., Irey, M. and Van Den Bosch, F. 2009. Estimating the spatial distribution of a plant disease epidemic from a sample. Abstracts 10th International Epidemiology Workshop, Geneva, New York, 7-12 June 2009 .

Optimal strategies for the eradication of Asiatic citrus canker in heterogeneous host landscapes

A - Papers appearing in refereed journals

Parnell, S. R., Gottwald, T. R., Van Den Bosch, F. and Gilligan, C. A. 2009. Optimal strategies for the eradication of Asiatic citrus canker in heterogeneous host landscapes. Phytopathology. 99 (12), pp. 1370-1376. https://doi.org/10.1094/PHYTO-99-12-1370

A numerical optimization method to estimate the spatial distribution of an epidemic

C2 - Non-edited contributions to conferences

Parnell, S. R., Gottwald, T. R. and Van Den Bosch, F. 2009. A numerical optimization method to estimate the spatial distribution of an epidemic. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859609990359

Some consequences of using the Horsfall-Barratt scale for estimating disease severity compared to nearest percent estimation

C2 - Non-edited contributions to conferences

Bock, C. H., Gottwald, T. R., Parker, P. E., Ferrandino, F., Welham, S. J., Van Den Bosch, F. and Parnell, S. R. 2009. Some consequences of using the Horsfall-Barratt scale for estimating disease severity compared to nearest percent estimation. Abstracts 10th International Epidemiological Workshop, Geneva, New York, 8-12 June 2009 .

Evaluation of a predictive model for Mycosphaerella graminicola for economic and environmental benefits

A - Papers appearing in refereed journals

Te Beest, D. E., Shaw, M. W., Paveley, N. D. and Van Den Bosch, F. 2009. Evaluation of a predictive model for Mycosphaerella graminicola for economic and environmental benefits. Plant Pathology. 58 (6), pp. 1001-1009. https://doi.org/10.1111/j.1365-3059.2009.02142.x

Physical effects of soil drying on roots and crop growth

A - Papers appearing in refereed journals

Whitmore, A. P. and Whalley, W. R. 2009. Physical effects of soil drying on roots and crop growth. Journal of Experimental Botany. 60, pp. 2845-2857. https://doi.org/10.1093/jxb/erp200

Periodic host absence and the evolution of plant pathogens

C2 - Non-edited contributions to conferences

Van Den Berg, F., Bacaer, N., Metz, J. A. J., Lannou, C. and Van Den Bosch, F. 2009. Periodic host absence and the evolution of plant pathogens. Abstracts Mathematical Models in Ecology and Evolution, Bristol, 10-11 September 2009 . pp. 40

The effect of long-term soil management on the physical and biological resilience of a range of arable and grassland soils in England

A - Papers appearing in refereed journals

Gregory, A. S., Watts, C. W., Griffiths, B. S., Hallett, P. D., Kuan, H. L. and Whitmore, A. P. 2009. The effect of long-term soil management on the physical and biological resilience of a range of arable and grassland soils in England. Geoderma. 153, pp. 172-185. https://doi.org/10.1016/j.geoderma.2009.08.002

Wavelet transforms applied to irregularly sampled soil data

A - Papers appearing in refereed journals

Milne, A. E. and Lark, R. M. 2009. Wavelet transforms applied to irregularly sampled soil data. Mathematical geosciences. 41, pp. 661-678. https://doi.org/10.1007/s11004-009-9234-4

The Horsfall-Barratt scale and severity estimates of citrus canker

A - Papers appearing in refereed journals

Bock, C. H., Gottwald, T. R., Parker, P. E., Cook, A. Z., Ferrandino, F., Parnell, S. and Van Den Bosch, F. 2009. The Horsfall-Barratt scale and severity estimates of citrus canker. European Journal of Plant Pathology. 125, pp. 23-38. https://doi.org/10.1007/s10658-009-9455-x

Investigating the effects of organic and conventional management on soil aggregate stability using X-ray computed tomography

A - Papers appearing in refereed journals

Papadopoulos, A., Bird, N. R. A., Whitmore, A. P. and Mooney, S. J. 2009. Investigating the effects of organic and conventional management on soil aggregate stability using X-ray computed tomography. European Journal of Soil Science. 60 (3), pp. 360-368. https://doi.org/10.1111/j.1365-2389.2009.01126.x

The effect of transmission route on plant virus epidemic development and disease control

A - Papers appearing in refereed journals

Jeger, M. J., Madden, L. V. and Van Den Bosch, F. 2009. The effect of transmission route on plant virus epidemic development and disease control. Journal of Theoretical Biology. 258, pp. 198-207. https://doi.org/10.1016/j.jtbi.2009.01.012

Weed Manager - a model-based decision support system for weed management in arable crops

A - Papers appearing in refereed journals

Parsons, D. J., Benjamin, L. R., Clarke, J., Ginsburg, D., Mayes, A., Milne, A. E. and Wilkinson, D. J. 2009. Weed Manager - a model-based decision support system for weed management in arable crops. Computers and Electronics in Agriculture. 65, pp. 155-167. https://doi.org/10.1016/j.compag.2008.08.007

Combining spatial resolutions in the multiscale analysis of soil pore-size distributions

A - Papers appearing in refereed journals

Papadopoulos, A., Whitmore, A. P., White, R. P., Mooney, S. J. and Bird, N. R. A. 2009. Combining spatial resolutions in the multiscale analysis of soil pore-size distributions. Vadose Zone Journal. 8, pp. 227-232. https://doi.org/10.2136/vzj2008.0042

Using stochastic dynamic programming to support weed management decisions over a rotation

A - Papers appearing in refereed journals

Benjamin, L. R., Milne, A. E., Parsons, D. J., Cussans, J. and Lutman, P. J. W. 2009. Using stochastic dynamic programming to support weed management decisions over a rotation. Weed Research. 49 (2), pp. 207-216. https://doi.org/10.1111/j.1365-3180.2008.00678.x

Modeling dynamic fragmentation of soil

A - Papers appearing in refereed journals

Bird, N. R. A., Watts, C. W., Tarquis, A. M. and Whitmore, A. P. 2009. Modeling dynamic fragmentation of soil. Vadose Zone Journal. 8 (1), pp. 197-201. https://doi.org/10.2136/vzj2008.0046

The presence of generalist plant pathogens might not explain the long-term coexistence of plant species

A - Papers appearing in refereed journals

Van Den Berg, F. and Van Den Bosch, F. 2009. The presence of generalist plant pathogens might not explain the long-term coexistence of plant species. Journal of Theoretical Biology. 257, pp. 446-453. https://doi.org/10.1016/j.jtbi.2008.11.020

Is it possible to increase the sustainability of arable and ruminant agriculture by reducing inputs?

A - Papers appearing in refereed journals

Glendining, M. J., Dailey, A. G., Williams, A. G., Van Evert, F. K., Goulding, K. W. T. and Whitmore, A. P. 2009. Is it possible to increase the sustainability of arable and ruminant agriculture by reducing inputs? Agricultural Systems. 99 (2-3), pp. 117-125. https://doi.org/10.1016/j.agsy.2008.11.001

A model for the optimal control of citrus canker disease (Xanthomonas axonopodis pv. citri) in a mixed-host landscape

C2 - Non-edited contributions to conferences

Parnell, S. R., Van Den Bosch, F. and Gottwald, T. R. 2008. A model for the optimal control of citrus canker disease (Xanthomonas axonopodis pv. citri) in a mixed-host landscape. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859608008083

Construction of maps estimating plant disease distribution: an epidemiological simulation approach

C2 - Non-edited contributions to conferences

Parnell, S. R., Gottwald, T. R. and Van Den Bosch, F. 2008. Construction of maps estimating plant disease distribution: an epidemiological simulation approach.

Factors affecting the recovery of available soil nitrogen by cereal and oilseed rape crops

C2 - Non-edited contributions to conferences

Knight, S. M., Macdonald, A. J., Glendining, M. J., Whitmore, A. P., Dailey, A. G., Goulding, K. W. T., Sinclair, A. H. and Rees, R. M. 2008. Factors affecting the recovery of available soil nitrogen by cereal and oilseed rape crops. Abstracts AAB Conference on Resource Capture by Crops: Integrated Resources, Nottingham, 10-12 September 2008 .

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Final report on EU contract

D1 - Technical reports: non-confidential

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Demon, I., Gladders, P. and Other External Partners 2008. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Final report on EU contract.

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Fourth interim annual report on EU contract

D1 - Technical reports: non-confidential

Evans, N., Fitt, B. D. L., Huang, Y-J., Van Den Bosch, F., Demon, I., Gladders, P. and Other External Partners 2008. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Fourth interim annual report on EU contract.

Discussion of: Schroder, J. J., Neeteson, J. J., 2008. Nutrient management regulations in The Netherlands (with Discussion)

A - Papers appearing in refereed journals

Goulding, K. W. T. and Whitmore, A. P. 2008. Discussion of: Schroder, J. J., Neeteson, J. J., 2008. Nutrient management regulations in The Netherlands (with Discussion). Geoderma. 144, pp. 426-428. https://doi.org/10.1016/j.geoderma.2007.12.010

Better estimation of soil nitrogen use efficiency by cereals and oilseed rape (HGCA Research Review No. 68)

D1 - Technical reports: non-confidential

Knight, S., Macdonald, A. J., Glendining, M. J., Whitmore, A. P., Dailey, A. G., Goulding, K. W. T., Sinclair, A. and Rees, B. 2008. Better estimation of soil nitrogen use efficiency by cereals and oilseed rape (HGCA Research Review No. 68). Home Grown Cereals Authority (HGCA) London.

Apical leaf necrosis as a defence mechanism against pathogen attack: effects of high nutrient availability on onset and rate of necrosis

A - Papers appearing in refereed journals

Van Den Berg, F., Van Den Bosch, F., Powers, S. J. and Shaw, M. W. 2008. Apical leaf necrosis as a defence mechanism against pathogen attack: effects of high nutrient availability on onset and rate of necrosis. Plant Pathology. 57 (6), pp. 1009-1016. https://doi.org/10.1111/j.1365-3059.2008.01865.x

Endoparasitism in cereal aphids: molecular analysis of a whole parasitoid community

A - Papers appearing in refereed journals

Traugott, M., Bell, J. R., Broad, G. R., Powell, W., Van Veen, F. J. F., Vollhardt, I. M. G. and Symondson, W. O. C. 2008. Endoparasitism in cereal aphids: molecular analysis of a whole parasitoid community. Molecular Ecology. 17 (17), pp. 3928-3938. https://doi.org/10.1111/j.1365-294X.2008.03878.x

Do functional traits improve prediction of predation rates for a disparate group of aphid predators?

A - Papers appearing in refereed journals

Bell, J. R., Mead, A., Skirvin, D. J., Sunderland, K. D., Fenlon, J. S. and Symondson, W. O. C. 2008. Do functional traits improve prediction of predation rates for a disparate group of aphid predators? Bulletin of Entomological Research. 98, pp. 587-597. https://doi.org/10.1017/S0007485308005919

Fungicide application and the minimisation of risk

C2 - Non-edited contributions to conferences

Van Den Bosch, F. and Te Beest, D. 2008. Fungicide application and the minimisation of risk.

Evolutionary epidemiology of plant viruses

C2 - Non-edited contributions to conferences

Van Den Bosch, F. 2008. Evolutionary epidemiology of plant viruses.

Construction of maps estimating plant disease distribution: an epidemiological simulation approach

C2 - Non-edited contributions to conferences

Parnell, S., Gottwald, T. R. and Van Den Bosch, F. 2008. Construction of maps estimating plant disease distribution: an epidemiological simulation approach. Abstracts ICPP 2008 9th International Congress of Plant Pathology: Healthy and Safe Food for Everybody, Torino, 24-29 August 2008 .

Beneficial links for the control of aphids: the effects of compost applications on predators and prey

A - Papers appearing in refereed journals

Bell, J. R., Traugott, M., Sunderland, K. D., Skirvin, D. J., Mead, A., Kravar-Garde, L., Reynolds, K., Fenlon, J. S. and Symondson, W. O. C. 2008. Beneficial links for the control of aphids: the effects of compost applications on predators and prey. Journal of Applied Ecology. 45 (4), pp. 1266-1273. https://doi.org/10.1111/j.1365-2664.2008.01479.x

Multiscale entropy-based analysis of soil transect data

A - Papers appearing in refereed journals

Tarquis, A. M., Bird, N. R. A., Whitmore, A. P., Cartagena, M. C. and Pachepsky, Y. 2008. Multiscale entropy-based analysis of soil transect data. Vadose Zone Journal. 7, pp. 563-569. https://doi.org/10.2136/vzj2007.0039

Fractal analysis of pore roughness in images of soil using the slit island method

A - Papers appearing in refereed journals

Papadopoulos, A., Bird, N. R. A., Mooney, S. J. and Whitmore, A. P. 2008. Fractal analysis of pore roughness in images of soil using the slit island method. Vadose Zone Journal. 7, pp. 456-460. https://doi.org/10.2136/vzj2007.0017

Changes in fungicide sensitivity and relative species abundance in Oculimaculata yallundae and O. acuformis populations (eyespot disease of cereals) in Western Europe

A - Papers appearing in refereed journals

Parnell, S., Gilligan, C. A., Lucas, J. A., Bock, C. H. and Van Den Bosch, F. 2008. Changes in fungicide sensitivity and relative species abundance in Oculimaculata yallundae and O. acuformis populations (eyespot disease of cereals) in Western Europe. Plant Pathology. 57 (3), pp. 509-517. https://doi.org/10.1111/j.1365-3059.2007.01786.x

Epidemiological models for invasion and persistence of pathogens

A - Papers appearing in refereed journals

Gilligan, C. A. and Van Den Bosch, F. 2008. Epidemiological models for invasion and persistence of pathogens. Annual Review of Phytopathology. 46, pp. 385-418. https://doi.org/10.1146/annurev.phyto.45.062806.094357

Functional resilience of soil microbial communities depends on both soil structure and microbial community composition

A - Papers appearing in refereed journals

Griffiths, B. S., Hallett, P. D., Kuan, H. L., Gregory, A. S., Watts, C. W. and Whitmore, A. P. 2008. Functional resilience of soil microbial communities depends on both soil structure and microbial community composition. Biology And Fertility Of Soils. 44, pp. 745-754. https://doi.org/10.1007/s00374-007-0257-z

The effect of soil strength on yield of wheat

A - Papers appearing in refereed journals

Whalley, W. R., Watts, C. W., Gregory, A. S., Mooney, S. J., Clark, L. J. and Whitmore, A. P. 2008. The effect of soil strength on yield of wheat. Plant and Soil. 306, pp. 237-247. https://doi.org/10.1007/s11104-008-9577-5

Models of fungicide resistance dynamics

A - Papers appearing in refereed journals

Van Den Bosch, F. and Gilligan, C. A. 2008. Models of fungicide resistance dynamics. Annual Review of Phytopathology. 46, pp. 123-147. https://doi.org/10.1146/annurev.phyto.011108.135838

Disease-weather relationships for powdery mildew and yellow rust on winter wheat

A - Papers appearing in refereed journals

Te Beest, D. E., Paveley, N. D., Shaw, M. W. and Van Den Bosch, F. 2008. Disease-weather relationships for powdery mildew and yellow rust on winter wheat. Phytopathology. 98 (5), pp. 609-617. https://doi.org/10.1094/PHYTO-98-5-0609

Weed and invertebrate community compositions in arable farmland

A - Papers appearing in refereed journals

Smith, V., Bohan, D. A., Clark, S. J., Haughton, A. J., Bell, J. R. and Heard, M. S. 2008. Weed and invertebrate community compositions in arable farmland. Arthropod-Plant Interactions. 2, pp. 21-30. https://doi.org/10.1007/s11829-007-9027-y

Carbon sequestration in European soils through straw incorporation: limitations and alternatives

A - Papers appearing in refereed journals

Powlson, D. S., Riche, A. B., Coleman, K., Glendining, M. J. and Whitmore, A. P. 2008. Carbon sequestration in European soils through straw incorporation: limitations and alternatives. Waste Management. 28, pp. 741-746. https://doi.org/10.1016/j.wasman.2007.09.024

The basic reproduction number of plant pathogens: matrix approaches to complex dynamics

A - Papers appearing in refereed journals

Van Den Bosch, F., Mcroberts, N., Van Den Berg, F. and Madden, L. V. 2008. The basic reproduction number of plant pathogens: matrix approaches to complex dynamics. Phytopathology. 98 (2), pp. 239-249. https://doi.org/10.1094/PHYTO-98-2-0239

Optimizing nutrient management for farm systems

A - Papers appearing in refereed journals

Goulding, K. W. T., Jarvis, S. and Whitmore, A. P. 2008. Optimizing nutrient management for farm systems. Philosophical Transactions of the Royal Society B-Biological Sciences. 363, pp. 667-680. https://doi.org/10.1098/rstb.2007.2177

Using spatial co-occurrence networks to examine the effects of prey biomass and density on the distribution of polyphagous predators

C2 - Non-edited contributions to conferences

Bell, J. R., King, R. A., Bohan, D. A. and Symondson, W. O. C. 2007. Using spatial co-occurrence networks to examine the effects of prey biomass and density on the distribution of polyphagous predators. Theoretical Population Ecology and Practical Biocontrol - Bridging the Gap, Studley Castle, 5-6 December 2007 .

The elasticity of the epidemic growth rate to observed weather patterns with an application to yellow rust

A - Papers appearing in refereed journals

Van Den Berg, F. and Van Den Bosch, F. 2007. The elasticity of the epidemic growth rate to observed weather patterns with an application to yellow rust. Phytopathology. 97, pp. 1512-1518. https://doi.org/10.1094/PHYTO-97-11-1512

Physical resilience of soil to field compaction and the interactions with plant growth and microbial community structure

A - Papers appearing in refereed journals

Gregory, A. S., Watts, C. W., Whalley, W. R., Kuan, H. L., Griffiths, B. S., Hallett, P. D. and Whitmore, A. P. 2007. Physical resilience of soil to field compaction and the interactions with plant growth and microbial community structure. European Journal of Soil Science. 58 (6), pp. 1221-1232. https://doi.org/10.1111/j.1365-2389.2007.00956.x

Molecular detection of predation on earthworms

C2 - Non-edited contributions to conferences

King, R. A., Bell, J. R., Bohan, D. A. and Symondson, W. O. C. 2007. Molecular detection of predation on earthworms. Abstracts UK and Irish Earthworm Researchers' Meeting, London, 28 September 2007 .

A model of the effect of fungicides on disease-induced yield loss, for use in wheat disease management decision support systems

A - Papers appearing in refereed journals

Milne, A. E., Paveley, N., Audsley, E. and Parsons, D. 2007. A model of the effect of fungicides on disease-induced yield loss, for use in wheat disease management decision support systems. Annals of Applied Biology - AAB. 151 (1), pp. 113-125. https://doi.org/10.1111/j.1744-7348.2007.00158.x

Intercropping reduces nitrate leaching from under field crops without loss of yield: a modelling study

A - Papers appearing in refereed journals

Whitmore, A. P. and Schroder, J. J. 2007. Intercropping reduces nitrate leaching from under field crops without loss of yield: a modelling study. European Journal of Agronomy. 27, pp. 81-88. https://doi.org/10.1016/j.eja.2007.02.004

Introgression of resistance genes between populations: a model study of insecticide resistance in Bemisia tabaci

A - Papers appearing in refereed journals

Demon, I. M., Haccou, P. and Van Den Bosch, F. 2007. Introgression of resistance genes between populations: a model study of insecticide resistance in Bemisia tabaci. Theoretical Population Biology. 72, pp. 292-304. https://doi.org/10.1016/j.tpb.2007.06.005

Economic and environmental validation of disease risk prediction models

C2 - Non-edited contributions to conferences

Te Beest, D. and Van Den Bosch, F. 2007. Economic and environmental validation of disease risk prediction models.

Evolution within Bemisia tabaci and associated begomoviruses: a strategic modelling approach

B - Book chapters etc edited externally

Van Den Bosch, F., Jeger, M. and Demon, I. 2007. Evolution within Bemisia tabaci and associated begomoviruses: a strategic modelling approach. in: Sweetmore, A., Silverside, P. and Kimmins, F. (ed.) Perspectives on pests II: achievements of research under UK Department for International Development Crop Protection Programme 2000-2005 Natural Resources International, London. pp. 188-190

Apical leaf necrosis and leaf nitrogen dynamics in diseased leaves: a model study

A - Papers appearing in refereed journals

Van Den Berg, F., Robert, C., Shaw, M. W. and Van Den Bosch, F. 2007. Apical leaf necrosis and leaf nitrogen dynamics in diseased leaves: a model study. Plant Pathology. 56 (3), pp. 424-436. https://doi.org/10.1111/j.1365-3059.2007.01565.x

The biological and physical stability and resilience of a selection of Scottish soils to stresses

A - Papers appearing in refereed journals

Kuan, H. L., Hallett, P. D., Griffiths, B. S., Gregory, A. S., Watts, C. W. and Whitmore, A. P. 2007. The biological and physical stability and resilience of a selection of Scottish soils to stresses. European Journal of Soil Science. 58 (3), pp. 811-821. https://doi.org/10.1111/j.1365-2389.2006.00871.x

Development and validation of a model to describe the progress of phoma stem canker epidemics in England and France

C1 - Edited contributions to conferences/learned societies

Evans, N., Pirie, E. J., Fitt, B. D. L., Papastamati, K., Gladders, P., Pinochet, X., Penaud, A. and Van Den Bosch, F. 2007. Development and validation of a model to describe the progress of phoma stem canker epidemics in England and France. Proceedings 12th International Rapeseed Congress. IV: Sustainable Development in Cruciferous Oilseed Crops Production, Wuhan, China, 26-30 March 2007 . Science Press, USA. pp. 161-164

The SECURE project - stem canker of oilseed rape: molecular methods and mathematical modeling to deploy durable resistance

C1 - Edited contributions to conferences/learned societies

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Huang, Y-J., Eckert, M., Pietravalle, S., Demon, I., Papastamati, K., Karolewski, Z., Rouxel, T., Balesdent, M-H., Ross, S., Fudal, I., Gout, L., Brun, H., Andrivon, D., Bousset, L., Besnard, A. L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Irzykowski, W., Stachowiak, A., Olechnowicz, J., Podlesna, A., Happstadius, I. and Renard, M. 2007. The SECURE project - stem canker of oilseed rape: molecular methods and mathematical modeling to deploy durable resistance. Proceedings 12th International Rapeseed Congress. IV: Sustainable Development in Cruciferous Oilseed Crops Production, Wuhan, China, 26-30 March 2007 . Science Press, USA. pp. 187-189

Determination of the mineralization of nitrogen from composted chicken manure as affected by temperature

A - Papers appearing in refereed journals

Whitmore, A. P. 2007. Determination of the mineralization of nitrogen from composted chicken manure as affected by temperature. Nutrient Cycling in Agroecosystems. 77, pp. 225-232. https://doi.org/10.1007/s10705-006-9059-1

Describing the transformation of organic carbon and nitrogen in soil using the MOTOR system

A - Papers appearing in refereed journals

Whitmore, A. P. 2007. Describing the transformation of organic carbon and nitrogen in soil using the MOTOR system. Computers and Electronics in Agriculture. 55, pp. 71-88. https://doi.org/10.1016/j.compag.2006.11.005

Prediction of the penetrometer resistance of soils with models with few parameters

A - Papers appearing in refereed journals

Whalley, W. R., To, J., Kay, B. D. and Whitmore, A. P. 2007. Prediction of the penetrometer resistance of soils with models with few parameters. Geoderma. 137, pp. 370-377. https://doi.org/10.1016/j.geoderma.2006.08.029

Disease control and its selection for damaging plant virus strains in vegetatively propagated staple food crops: a theoretical assessment

A - Papers appearing in refereed journals

Van Den Bosch, F., Jeger, M. J. and Gilligan, C. A. 2007. Disease control and its selection for damaging plant virus strains in vegetatively propagated staple food crops: a theoretical assessment. Proceedings of the Royal Society of London Series B Biological Sciences. 274, pp. 11-18. https://doi.org/10.1098/rspb.2006.3715

The sensitivity of the epidemic growth rate to weather variables, with an application to yellow rust on wheat

A - Papers appearing in refereed journals

Papastamati, K. and Van Den Bosch, F. 2007. The sensitivity of the epidemic growth rate to weather variables, with an application to yellow rust on wheat. Phytopathology. 97 (2), pp. 202-210. https://doi.org/10.1094/PHYTO-97-2-0202

SECURE - stem canker of oilseed rape: molecular methods and mathematical modeling to deploy durable resistance (QLK5-CT-2002-01813)

C1 - Edited contributions to conferences/learned societies

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Huang, Y-J., Pietravalle, S., Eckert, M., Papastamati, K., Demon, I., Karolewski, Z., Rouxel, T., Balesdent, M-H., Fudal, I., Gout, L., Brun, H., Andrivon, D., Bousset, L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Stachowiak, A., Olechnowicz, J., Podlesna, A., Happstadius, I., Meyer, J. and Renard, M. 2006. SECURE - stem canker of oilseed rape: molecular methods and mathematical modeling to deploy durable resistance (QLK5-CT-2002-01813).

A new method to estimate boundary models for biological datasets

C2 - Non-edited contributions to conferences

Milne, A. E. and Lark, R. M. 2006. A new method to estimate boundary models for biological datasets. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859606006290

Formulating an early-warning model for Septoria tritici

C2 - Non-edited contributions to conferences

Te Beest, D. E., Pietravalle, S., Shaw, M. W. and Van Den Bosch, F. 2006. Formulating an early-warning model for Septoria tritici. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859606006290

Establishing the risk of introgression of insecticide resistance for Bemisia tabaci

C2 - Non-edited contributions to conferences

Demon, I., Van Den Bosch, F. and Jeger, M. 2006. Establishing the risk of introgression of insecticide resistance for Bemisia tabaci. Cambridge University Press (CUP). https://doi.org/10.1017/S0021859606006290

The role of clay, organic carbon and long-term management on mouldboard plough draught measured on the Broadbalk wheat experiment at Rothamsted

A - Papers appearing in refereed journals

Watts, C. W., Clark, L. J., Poulton, P. R., Powlson, D. S. and Whitmore, A. P. 2006. The role of clay, organic carbon and long-term management on mouldboard plough draught measured on the Broadbalk wheat experiment at Rothamsted. Soil Use and Management. 22 (4), pp. 334-341. https://doi.org/10.1111/j.1475-2743.2006.00054.x

Using a process model and regression kriging to improve predictions of nitrous oxide emissions from soil

A - Papers appearing in refereed journals

Stacey, K. F., Lark, R. M., Whitmore, A. P. and Milne, A. E. 2006. Using a process model and regression kriging to improve predictions of nitrous oxide emissions from soil. Geoderma. 135, pp. 107-117. https://doi.org/10.1016/j.geoderma.2005.11.008

Begomovirus evolution and disease management

A - Papers appearing in refereed journals

Seal, S. E., Jeger, M. J. and Van Den Bosch, F. 2006. Begomovirus evolution and disease management. Advances in Virus Research. 67, pp. 297-316. https://doi.org/10.1016/S0065-3527(06)67008-5

Ballooning dispersal in arthropod taxa with convergent behaviours: dynamic properties of ballooning silk in turbulent flows

A - Papers appearing in refereed journals

Reynolds, A. M., Bohan, D. A. and Bell, J. R. 2006. Ballooning dispersal in arthropod taxa with convergent behaviours: dynamic properties of ballooning silk in turbulent flows. Biology Letters. 2, pp. 371-373. https://doi.org/10.1098/rsbl.2006.0486

Evolutionary epidemiology of plant virus disease

A - Papers appearing in refereed journals

Jeger, M. J., Seal, S. E. and Van Den Bosch, F. 2006. Evolutionary epidemiology of plant virus disease. Advances in Virus Research. 67, pp. 163-203. https://doi.org/10.1016/S0065-3527(06)67005-X

How far might medium-term weather forecasts improve nitrogen fertiliser use and benefit arable farming in the England and Wales?

A - Papers appearing in refereed journals

Dailey, A. G., Smith, J. U. and Whitmore, A. P. 2006. How far might medium-term weather forecasts improve nitrogen fertiliser use and benefit arable farming in the England and Wales? Agriculture, Ecosystems & Environment. 117, pp. 22-28. https://doi.org/10.1016/j.agee.2006.03.004

On testing biological data for the presence of a boundary

A - Papers appearing in refereed journals

Milne, A. E., Wheeler, H. C. and Lark, R. M. 2006. On testing biological data for the presence of a boundary. Annals of Applied Biology - AAB. 149 (2), pp. 213-222. https://doi.org/10.1111/j.1744-7348.2006.00085.x

Estimating a boundary line model for a biological response by maximum likelihood

A - Papers appearing in refereed journals

Milne, A. E., Ferguson, R. B. and Lark, R. M. 2006. Estimating a boundary line model for a biological response by maximum likelihood. Annals of Applied Biology - AAB. 149 (2), pp. 223-234. https://doi.org/10.1111/j.1744-7348.2006.00086.x

Transient population dynamics in periodic matrix models: methodology and effects of cyclic permutations

A - Papers appearing in refereed journals

Mertens, S. K., Yearsley, J. M., Van Den Bosch, F. and Gilligan, C. A. 2006. Transient population dynamics in periodic matrix models: methodology and effects of cyclic permutations. Ecology. 87 (9), pp. 2338-2348. https://doi.org/10.1890/0012-9658(2006)87[2338:TPDIPM]2.0.CO;2

Coexistence of related pathogen species on arable crops in space and time

A - Papers appearing in refereed journals

Fitt, B. D. L., Huang, Y-J., Van Den Bosch, F. and West, J. S. 2006. Coexistence of related pathogen species on arable crops in space and time. Annual Review of Phytopathology. 44, pp. 163-182. https://doi.org/10.1146/annurev.phyto.44.070505.143417

Host resistance and the evolutionary response of plant viruses

A - Papers appearing in refereed journals

Van Den Bosch, F., Akudibilah, G., Seal, S. and Jeger, M. 2006. Host resistance and the evolutionary response of plant viruses. Journal of Applied Ecology. 43 (3), pp. 506-516. https://doi.org/10.1111/j.1365-2664.2006.01159.x

Calculation of the compression index and precompression stress from soil compression test data

A - Papers appearing in refereed journals

Gregory, A. S., Whalley, W. R., Watts, C. W., Bird, N. R. A., Hallett, P. D. and Whitmore, A. P. 2006. Calculation of the compression index and precompression stress from soil compression test data. Soil & Tillage Research. 89, pp. 45-57. https://doi.org/10.1016/j.still.2005.06.012

Large-scale fungicide spray heterogeneity and the regional spread of resistant pathogen strains

A - Papers appearing in refereed journals

Parnell, S., Van Den Bosch, F. and Gilligan, C. A. 2006. Large-scale fungicide spray heterogeneity and the regional spread of resistant pathogen strains. Phytopathology. 96 (5), pp. 549-555. https://doi.org/10.1094/PHYTO-96-0549

Pest and disease management system for supporting winter oilseed rape decisions (PASSWORD) - vaildation phase (HGCA Project Report No. 390)

D1 - Technical reports: non-confidential

Gladders, P., Dyer, C., Fitt, B. D. L., Evans, N., Van Den Bosch, F., Baierl, A., Turner, J., Walters, K., Northing, P., Sutherland, K., Oxley, S., Foster, V., Ellerton, D., Myers, N., Selley, A., Ashworth, M. and Hall, B. 2006. Pest and disease management system for supporting winter oilseed rape decisions (PASSWORD) - vaildation phase (HGCA Project Report No. 390). London Home Grown Cereals Authority (HGCA).

Development and validation of 'weed management support system' (Weed Manager). HGCA project report no. 388

D1 - Technical reports: non-confidential

Tatnell, L. V., Clarke, J. H., Ginsburg, D., Lutman, P. J. W., Mayes, A., Benjamin, L. R., Parsons, D. J., Milne, A. E., Wilkinson, D. J. and Davies, D. H. K. 2006. Development and validation of 'weed management support system' (Weed Manager). HGCA project report no. 388. London Home Grown Cereals Authority (HGCA).

Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control

A - Papers appearing in refereed journals

Seal, S. E., Van Den Bosch, F. and Jeger, M. J. 2006. Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical reviews in plant sciences. 25, pp. 23-46. https://doi.org/10.1080/07352680500365257

Durability of resistance and cost of virulence

A - Papers appearing in refereed journals

Pietravalle, S., Lamarie, S. and Van Den Bosch, F. 2006. Durability of resistance and cost of virulence. European Journal of Plant Pathology. 114, pp. 107-116. https://doi.org/10.1007/s10658-005-3479-7

Can simple experimental electronics simulate the dispersal phase of spider ballooners?

A - Papers appearing in refereed journals

Bell, J. R., Bohan, D. A., Le Fevre, R. and Weyman, G. S. 2005. Can simple experimental electronics simulate the dispersal phase of spider ballooners? Journal Of Arachnology. 33, pp. 523-532.

Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance

C2 - Non-edited contributions to conferences

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Eckert, M., Huang, Y-J., Pietravalle, S., Rouxel, T., Balesdent, M., Ross, S., Gout, L., Brun, H., Andrivon, D., Bousset, L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Stachowiak, A., Olechnowicz, J., Happstadius, I., Podlesna, A., Renard, M. and Karolewski, Z. 2005. Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. Abstracts 9th International Workshop on Plant Disease Epidemiology: Facing Challenges of the 21st Century, Landerneau, 11-15 April 2005 . pp. 28

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Third interim annual report for period 1 September 2004-31 August 2005 on EU contract QLK5-CT-2002-01813

D1 - Technical reports: non-confidential

Evans, N., Huang, Y-J., Pietravalle, S., Van Den Bosch, F., Fitt, B. D. L. and Papastamati, K. 2005. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Third interim annual report for period 1 September 2004-31 August 2005 on EU contract QLK5-CT-2002-01813.

Use of risk prediction models for integrated control of diseases of oilseed rape in the UK

C1 - Edited contributions to conferences/learned societies

Evans, N., Welham, S. J., Baierl, A., Antoniw, J. F., Papastamati, K., Van Den Bosch, F., Fitt, B. D. L., Gladders, P., Turner, J. A. and Elcock, S. 2005. Use of risk prediction models for integrated control of diseases of oilseed rape in the UK. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 31 October-2 November 2005 . pp. 649-654

Factors affecting co-existence of related pathogen species on arable crops

C2 - Non-edited contributions to conferences

West, J. S., Huang, Y-J., Van Den Bosch, F. and Fitt, B. D. L. 2005. Factors affecting co-existence of related pathogen species on arable crops. Abstracts 15th Biennial Australasian Plant Pathology Society Conference, Geelong, Australia, 26-29 September 2005 . pp. 92

Weekly weather generation for a nitrogen turnover model

A - Papers appearing in refereed journals

Dailey, A. G., Smith, J. U. and Whitmore, A. P. 2005. Weekly weather generation for a nitrogen turnover model. Nutrient Cycling in Agroecosystems. 73 (2-3), pp. 257-266. https://doi.org/10.1007/s10705-005-3031-3

Adverse effects of simulated harvesting of short-rotation willow and poplar coppice on vertical pressures and rut depths

A - Papers appearing in refereed journals

Watts, C. W., Clark, L. J., Chamen, W. C. T. and Whitmore, A. P. 2005. Adverse effects of simulated harvesting of short-rotation willow and poplar coppice on vertical pressures and rut depths. Soil & Tillage Research. 84 (2), pp. 192-199. https://doi.org/10.1016/j.still.2004.11.012

Sensing the physical and nutritional status of the root environment in the field: a review of progress and opportunities

A - Papers appearing in refereed journals

Clark, L. J., Gowing, D. J. G., Lark, R. M., Leeds-Harrison, P. B., Miller, A. J., Wells, D. M., Whalley, W. R. and Whitmore, A. P. 2005. Sensing the physical and nutritional status of the root environment in the field: a review of progress and opportunities. The Journal of Agricultural Science. 143, pp. 347-358. https://doi.org/10.1017/S0021859605005253

Biological and technical processes that mediate micro-aggregation of clays

A - Papers appearing in refereed journals

Watts, C. W., Whalley, W. R., Brookes, P. C., Devonshire, B. J. and Whitmore, A. P. 2005. Biological and technical processes that mediate micro-aggregation of clays. Soil Science. 170 (8), pp. 573-583. https://doi.org/10.1097/01.ss.0000178206.74040.0c

Ballooning dispersal using silk: world fauna, phylogenies, genetics and models

A - Papers appearing in refereed journals

Bell, J. R., Bohan, D. A., Shaw, E. M. and Weyman, G. S. 2005. Ballooning dispersal using silk: world fauna, phylogenies, genetics and models. Bulletin of Entomological Research. 95 (2), pp. 69-114. https://doi.org/10.1079/BER2004350

Small-scale fungicide spray heterogeneity and the coexistence of resistant and sensitive pathogen strains

A - Papers appearing in refereed journals

Parnell, S., Gilligan, C. A. and Van Den Bosch, F. 2005. Small-scale fungicide spray heterogeneity and the coexistence of resistant and sensitive pathogen strains. Phytopathology. 95 (6), pp. 632-639. https://doi.org/10.1094/PHYTO-95-0632

Which traits promote persistence of feral GM crops? Part 2: implications of metapopulation structure

A - Papers appearing in refereed journals

Claessen, D., Gilligan, C. A. and Van Den Bosch, F. 2005. Which traits promote persistence of feral GM crops? Part 2: implications of metapopulation structure. Oikos. 110 (1), pp. 30-42. https://doi.org/10.1111/j.0030-1299.2005.13668.x

Which traits promote persistence of feral GM crops? Part 1: implications of environmental stochasticity

A - Papers appearing in refereed journals

Claessen, D., Gilligan, C. A., Lutman, P. J. W. and Van Den Bosch, F. 2005. Which traits promote persistence of feral GM crops? Part 1: implications of environmental stochasticity. Oikos. 110 (1), pp. 20-29. https://doi.org/10.1111/j.0030-1299.2005.13667.x

Durability of resistance and optimum deployment strategies for resistant cultivars

C2 - Non-edited contributions to conferences

Pietravalle, S., Evans, N. and Van Den Bosch, F. 2005. Durability of resistance and optimum deployment strategies for resistant cultivars. Abstracts 9th International Workshop on Plant Disease Epidemiology, Rennes, 10-15 April 2005 . pp. 41

Wavelet analysis of the scale- and location-dependent correlation of modelled and measured nitrous oxide emissions from soil

A - Papers appearing in refereed journals

Milne, A. E., Lark, R. M., Addiscott, T. M., Goulding, K. W. T., Webster, C. P. and O'flaherty, S. 2005. Wavelet analysis of the scale- and location-dependent correlation of modelled and measured nitrous oxide emissions from soil. European Journal of Soil Science. 56 (1), pp. 3-17. https://doi.org/10.1111/j.1365-2389.2004.00650.x

Adaptation to the cost of resistance: a model of compensation, recombination and selection in a haploid organism

A - Papers appearing in refereed journals

Wijngaarden, P. J., Van Den Bosch, F., Jeger, M. J. and Hoekstra, R. F. 2005. Adaptation to the cost of resistance: a model of compensation, recombination and selection in a haploid organism. Proceedings of the Royal Society of London Series B Biological Sciences. 272, pp. 85-89.

Spatial and temporal dynamics of gene movements arising from deployment of transgenic crops

B - Book chapters etc edited externally

Gilligan, C. A., Claessen, D. and Van Den Bosch, F. 2005. Spatial and temporal dynamics of gene movements arising from deployment of transgenic crops. in: Wesseler, J. H. H. (ed.) Environmental costs and benefits of transgenic crops Springer, Heidelberg. pp. 143-161

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Second interim report for period 1 September 2003-31 August 2004 on EU contract QLK5-CT-2002-01813

D1 - Technical reports: non-confidential

Evans, N., Huang, Y-J., Pietravalle, S., Van Den Bosch, F., Fitt, B. D. L. and Papastamati, K. 2004. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). Second interim report for period 1 September 2003-31 August 2004 on EU contract QLK5-CT-2002-01813.

The influence of spray heterogeneity on the dynamics of fungicide resistance

C2 - Non-edited contributions to conferences

Parnell, S. R., Gilligan, C. A. and Van Den Bosch, F. 2004. The influence of spray heterogeneity on the dynamics of fungicide resistance. Abstracts Discovery, Development and Delivery in Plant Pathology: 7th Conference of the European Foundation for Plant Pathology and BSPP Presidential Meeting 2004, Aberdeen, 5-10 September 2004 . pp. 13-14

Durability of resistance: a modelling approach

C1 - Edited contributions to conferences/learned societies

Pietravalle, S., Van Den Bosch, F. and Evans, N. 2004. Durability of resistance: a modelling approach.

SECURE - possibilities for durable resistance to stem canker?

C1 - Edited contributions to conferences/learned societies

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Eckert, M., Huang, Y-J., Pietravalle, S., Karolewski, Z., Rouxel, T., Balesdent, M-H., Ross, S., Gout, L., Brun, H., Andrivon, D., Bousset, L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Stachowiak, A., Olechnowicz, J., Podlesna, A., Happstadius, I. and Renard, M. 2004. SECURE - possibilities for durable resistance to stem canker?

Development of a decision support system for phoma and light leaf spot in winter oilseed rape ('PASSWORD' Project) (HGCA Project Report No. 357)

D1 - Technical reports: non-confidential

Gladders, P., Dyer, C., Fitt, B. D. L., Evans, N., Van Den Bosch, F., Steed, J. M., Baierl, A., Turner, J., Walters, K., Northing, P., Sutherland, K., Campbell, S., Ellerton, D., Selley, A., Hall, B., Naylor, D. and Parker, C. 2004. Development of a decision support system for phoma and light leaf spot in winter oilseed rape ('PASSWORD' Project) (HGCA Project Report No. 357). Home Grown Cereals Authority (HGCA) London.

A model for the evolution of pathogen-induced leaf shedding

A - Papers appearing in refereed journals

Van Den Berg, F. and Van Den Bosch, F. 2004. A model for the evolution of pathogen-induced leaf shedding. Oikos. 107 (1), pp. 36-49. https://doi.org/10.1111/j.0030-1299.2004.13238.x

Transmission rates and adaptive evolution of pathogens in sympatric heterogeneous plant populations

A - Papers appearing in refereed journals

Gudelj, I., Van Den Bosch, F. and Gilligan, C. A. 2004. Transmission rates and adaptive evolution of pathogens in sympatric heterogeneous plant populations. Proceedings of the Royal Society B: Biological Sciences. 271 (1553), pp. 2187-2194. https://doi.org/10.1098/rspb.2004.2837

The effect of crop and pest management practices on the evolution within Bemisia tabaci

C2 - Non-edited contributions to conferences

Demon, I., Jeger, M. and Van Den Bosch, F. 2004. The effect of crop and pest management practices on the evolution within Bemisia tabaci. Abstracts 2nd European Whitefly Symposium, Cavtat, Croatia, 5-9 October 2004 . pp. 43

The effect of spatial distributions of mycoparasites on biocontrol efficacy: a modelling approach

A - Papers appearing in refereed journals

Jeger, M. J., Termorshuizen, A. J., Nagtzaam, M. P. M. and Van Den Bosch, F. 2004. The effect of spatial distributions of mycoparasites on biocontrol efficacy: a modelling approach. Biocontrol Science and Technology. 14, pp. 359-373.

Scale- and location-dependent correlation of nitrous oxide emissions with soil properties: an analysis using wavelets

A - Papers appearing in refereed journals

Lark, R. M., Milne, A. E., Addiscott, T. M., Goulding, K. W. T., Webster, C. P. and O'flaherty, S. 2004. Scale- and location-dependent correlation of nitrous oxide emissions with soil properties: an analysis using wavelets. European Journal of Soil Science. 55 (3), pp. 611-627. https://doi.org/10.1111/j.1365-2389.2004.00620.x

Analysing spatially intermittent variation of nitrous oxide emissions from soil with wavelets and the implications for sampling

A - Papers appearing in refereed journals

Lark, R. M., Milne, A. E., Addiscott, T. M., Goulding, K. W. T., Webster, C. P. and O'flaherty, S. 2004. Analysing spatially intermittent variation of nitrous oxide emissions from soil with wavelets and the implications for sampling. European Journal of Soil Science. 55 (3), pp. 601-610. https://doi.org/10.1111/j.1365-2389.2004.00629.x

Modelling leaf wetness duration during the rosette stage of oilseed rape

A - Papers appearing in refereed journals

Papastamati, K., McCartney, H. A. and Van Den Bosch, F. 2004. Modelling leaf wetness duration during the rosette stage of oilseed rape. Agricultural and Forest Meteorology. 123 (1-2), pp. 69-78. https://doi.org/10.1016/j.agrformet.2003.10.003

Evolution of sibling fungal plant pathogens in relation to host specialization

A - Papers appearing in refereed journals

Gudelj, I., Fitt, B. D. L. and Van Den Bosch, F. 2004. Evolution of sibling fungal plant pathogens in relation to host specialization. Phytopathology. 94 (7), pp. 789-795. https://doi.org/10.1094/PHYTO.2004.94.7.789

Effect of temperature on latent period of septoria leaf blotch on winter wheat under outdoor conditions

A - Papers appearing in refereed journals

Lovell, D. J., Hunter, T., Powers, S. J., Parker, S. R. and Van Den Bosch, F. 2004. Effect of temperature on latent period of septoria leaf blotch on winter wheat under outdoor conditions. Plant Pathology. 53 (2), pp. 170-181. https://doi.org/10.1111/j.1365-3059.2004.00983.x

Epidemiology of insect-transmitted plant viruses: modelling disease dynamics and control interventions

A - Papers appearing in refereed journals

Jeger, M. J., Holt, J., Van Den Bosch, F. and Madden, L. V. 2004. Epidemiology of insect-transmitted plant viruses: modelling disease dynamics and control interventions. Physiological Entomology. 29 (3), pp. 291-304. https://doi.org/10.1111/j.0307-6962.2004.00394.x

Providing a framework for improved management of weeds in arable systems - WMSS

C1 - Edited contributions to conferences/learned societies

Davies, D. H. K., Maskell, P., Collings, L. V., Ginsburg, D., Clarke, J. H., Milne, A. E., Benjamin, L. R., Mayes, A. and Lutman, P. J. W. 2004. Providing a framework for improved management of weeds in arable systems - WMSS. Proceedings Conference on Crop Protection in Northern Britain, Dundee, 24-25 February 2004 . pp. 195-200

Double-jump migration and diffusive instability

A - Papers appearing in refereed journals

Huang, Y., Diekmann, O. and Van Den Bosch, F. 2004. Double-jump migration and diffusive instability. Bulletin Of Mathematical Biology. 66, pp. 487-504.

Strategies optimales pour le deploiement de varietes resistantes: modelisation analytique de la durabilite de la resistance

C2 - Non-edited contributions to conferences

Pietravalle, S. and Van Den Bosch, F. 2004. Strategies optimales pour le deploiement de varietes resistantes: modelisation analytique de la durabilite de la resistance. Abstracts Journees Jean Chevaugeon 5e Rencontres de Phytopathologie/Mycologie, Aussois, 18-22 January 2004 .

StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). First interim annual report for period 1 September 2002-31 August 2003 on EU contract QLK5-CT-2002-01813

D1 - Technical reports: non-confidential

Evans, N., Huang, Y-J., Pietravalle, S., Van Den Bosch, F., Fitt, B. D. L. and Papastamati, K. 2003. StEm Canker of oilseed rape: molecular tools and mathematical modelling to deploy dUrable Resistance (SECURE). First interim annual report for period 1 September 2002-31 August 2003 on EU contract QLK5-CT-2002-01813.

A rational basis for the design of wheat canopy ideotypes

C1 - Edited contributions to conferences/learned societies

Parker, S. R., Berry, P. M., Paveley, N. D., Van Den Bosch, F. and Lovell, D. J. 2003. A rational basis for the design of wheat canopy ideotypes. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 10-12 November 2003 . pp. 1101-1106

Climate change and soil functions: consequences of inaction and possible mitigations through land management

C2 - Non-edited contributions to conferences

Powlson, D. S., Falloon, P., Coleman, K., Cox, P., Gaunt, J. L., Shield, I. F., Riche, A. B. and Whitmore, A. P. 2003. Climate change and soil functions: consequences of inaction and possible mitigations through land management. Abstracts ASA-CSSA-SSSA Annual Meeting. Changing Sciences for a Changing World: Building a Broader Vision, Denver, 2-6 November 2003 .

Co-existence between Leptosphaeria maculans and L. biglibosa in the UK

C2 - Non-edited contributions to conferences

Fitt, B. D. L., Huang, Y-J., Gudelj, I. and Van Den Bosch, F. 2003. Co-existence between Leptosphaeria maculans and L. biglibosa in the UK.

Climate change and soil functions: consequences of inaction and possible mitigations through land management

C2 - Non-edited contributions to conferences

Powlson, D. S., Falloon, P., Coleman, K., Cox, P., Gaunt, J. L., Shield, I. F. and Whitmore, A. P. 2003. Climate change and soil functions: consequences of inaction and possible mitigations through land management. Abstracts ASA-CSSA-SSSA Annual Meeting. Changing Sciences for a Changing World: Building a Broader Vision, Denver, 2-6 November 2003 .

In situ measurements of erosion shear stress and geotechnical shear strength of the intertidal sediments of the experimental managed realignment scheme at Tollesbury, Essex, UK

A - Papers appearing in refereed journals

Watts, C. W., Tolhurst, T. J., Black, K. S. and Whitmore, A. P. 2003. In situ measurements of erosion shear stress and geotechnical shear strength of the intertidal sediments of the experimental managed realignment scheme at Tollesbury, Essex, UK. Estuarine, Coastal and Shelf Science. 58, pp. 611-620. https://doi.org/10.1016/S0272-7714(03)00139-2

Modelling stem canker (Leptosphaeria maculans ) on winter oilseed rape (Brassica napus )

C2 - Non-edited contributions to conferences

Papastamati, K., Van Den Bosch, F. and Jeger, M. J. 2003. Modelling stem canker (Leptosphaeria maculans ) on winter oilseed rape (Brassica napus ).

A mechanistic model for stem canker (Leptosphaeria maculans ) on winter oilseed rape (Brassica napus )

C2 - Non-edited contributions to conferences

Papastamati, K., Jeger, M. and Van Den Bosch, F. 2003. A mechanistic model for stem canker (Leptosphaeria maculans ) on winter oilseed rape (Brassica napus ). Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 1160-1162

An environmental physics driven model for leaf wetness duration on winter oilseed rape

C1 - Edited contributions to conferences/learned societies

Papastamati, K., McCartney, H. A. and Van Den Bosch, F. 2003. An environmental physics driven model for leaf wetness duration on winter oilseed rape. Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 1163-1165

Effects of initial conditions on weed seedbank dynamics in crop rotations

C1 - Edited contributions to conferences/learned societies

Mertens, S. K., Gilligan, C. A. and Van Den Bosch, F. 2003. Effects of initial conditions on weed seedbank dynamics in crop rotations. Seedbanks: Determination, Dynamics and Management. Aspects of Applied Biology 69 . pp. 223-228

The evolution of pathogen-induced leaf shed

C2 - Non-edited contributions to conferences

Van Den Berg, F. and Van Den Bosch, F. 2003. The evolution of pathogen-induced leaf shed. Abstracts Alcala 2nd International Conference on Mathematical Ecology, Madrid, 5-9 September 2003 . pp. 10-Ber-a/b

Which traits promote persistence of feral GM crops?

C2 - Non-edited contributions to conferences

Claessen, D., Gilligan, C. A., Lutman, P. J. W. and Van Den Bosch, F. 2003. Which traits promote persistence of feral GM crops? Cambridge University Press (CUP).

Weed populations and crop rotations: exploring dynamics of a structured periodic system

C2 - Non-edited contributions to conferences

Mertens, S. K., Van Den Bosch, F. and Heesterbeek, J. A. P. 2003. Weed populations and crop rotations: exploring dynamics of a structured periodic system. Cambridge University Press (CUP).

Measures of durability of resistance

A - Papers appearing in refereed journals

Van Den Bosch, F. and Gilligan, C. A. 2003. Measures of durability of resistance. Phytopathology. 93 (5), pp. 616-625. https://doi.org/10.1094/PHYTO.2003.93.5.616

WMSS: improving the precision and prediction of weed management strategies in winter dominant rotations

C1 - Edited contributions to conferences/learned societies

Collings, L. V., Ginsburg, D., Clarke, J. H., Milne, A. E., Parsons, D. J., Wilkinson, D. J., Benjamin, L. R., Mayes, A., Lutman, P. J. W. and Davies, D. H. K. 2003. WMSS: improving the precision and prediction of weed management strategies in winter dominant rotations. Proceedings BCPC International Congress - Crop Science and Technology, Glasgow, 10-12 November 2003 . pp. 229-232

Modeling of relationships between weather and Septoria tritici epidemics on winter wheat: a critical approach

A - Papers appearing in refereed journals

Pietravalle, S., Shaw, M. W., Parker, S. R. and Van Den Bosch, F. 2003. Modeling of relationships between weather and Septoria tritici epidemics on winter wheat: a critical approach. Phytopathology. 93 (10), pp. 1329-1339. https://doi.org/10.1094/PHYTO.2003.93.10.1329

The dynamics of an eco-epidemic model with biological control

A - Papers appearing in refereed journals

Xiao, Y. and Van Den Bosch, F. 2003. The dynamics of an eco-epidemic model with biological control. Ecological Modelling. 168, pp. 203-214.

Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance

C1 - Edited contributions to conferences/learned societies

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Eckert, M., Huang, Y-J., Pietravalle, S., Karolewski, Z., Rouxel, T., Balesdent, M-H., Ross, S., Gout, L., Brun, H., Andrivon, D., Bousset, L., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Stachowiak, A., Olechnowicz, J., Podlesna, A., Happstadius, I., Meyer, J. and Renard, M. 2003. Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. Proceedings 11th International Rapeseed Congress, Copenhagen, 6-10 July 2003 . pp. 36-38

Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance

G - Articles in popular magazines and other technical publications

Evans, N., Fitt, B. D. L., Van Den Bosch, F., Rouxel, T., Balesdent, M-H., Brun, H., Andrivon, D., Gladders, P., Pinochet, X., Penaud, A., Jedryczka, M., Kachlicki, P., Happstadius, I., Meyer, J., Karolewski, Z. and Renard, M. 2003. Stem canker of oilseed rape: molecular tools and mathematical modelling to deploy durable resistance. GCIRC Bulletin. 19, pp. 40-42.

A rational basis for the design of wheat canopy ideotypes

C2 - Non-edited contributions to conferences

Berry, P. M., Parker, S. R., Van Den Bosch, F. and Paveley, N. D. 2002. A rational basis for the design of wheat canopy ideotypes. Abstracts AAB Meeting Genotype-Phenotype: Narrowing the Gap, Cirencester, 16-18 December 2002 .

Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ), in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors

C2 - Non-edited contributions to conferences

Papastamati, K., Van Den Bosch, F., Welham, S. J., Fitt, B. D. L., Evans, N. and Steed, J. M. 2002. Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ), in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors. Cambridge University Press (CUP).

Towards an early warning system for winter wheat disease severity

C1 - Edited contributions to conferences/learned societies

Pietravalle, S., Van Den Bosch, F., Shaw, M. W. and Parker, S. R. 2002. Towards an early warning system for winter wheat disease severity. Proceedings Brighton Crop Protection Conference - Pests and Diseases, 2002 . pp. 897-902

Weed populations and crop rotations: exploring dynamics of a structured periodic system

A - Papers appearing in refereed journals

Mertens, S. K., Van Den Bosch, F. and Heesterbeek, J. A. P. 2002. Weed populations and crop rotations: exploring dynamics of a structured periodic system. Ecological Applications. 12 (4), pp. 1125-1141. https://doi.org/10.2307/3061041

Dynamical behavior for a stage-structured SIR infectious disease model

A - Papers appearing in refereed journals

Xiao, Y., Chen, L. and Van Den Bosch, F. 2002. Dynamical behavior for a stage-structured SIR infectious disease model. Nonlinear Analysis-Real World Applications. 3, pp. 175-190.

Quasi-steady state approximation to a fungal growth model

A - Papers appearing in refereed journals

Lamour, A., Van Den Bosch, F., Termorshuizen, A. J. and Jeger, M. J. 2002. Quasi-steady state approximation to a fungal growth model. IMA Journal of Mathematics Applied in Medicine and Biology. 19, pp. 163-183.

Modelling plant virus epidemics in a plantation-nursery system

A - Papers appearing in refereed journals

Jeger, M. J., Van Den Bosch, F. and Dutmer, M. Y. 2002. Modelling plant virus epidemics in a plantation-nursery system. IMA Journal of Mathematics Applied in Medicine and Biology. 19, pp. 75-94.

Window Pane, la redecouverte d'une ancienne methode: quel avenir? Etude de l'exemple de la Septoriose (Mycosphaerella graminocola ) du ble d'hiver

C2 - Non-edited contributions to conferences

Pietravalle, S., Van Den Bosch, F. and Shaw, M. 2002. Window Pane, la redecouverte d'une ancienne methode: quel avenir? Etude de l'exemple de la Septoriose (Mycosphaerella graminocola ) du ble d'hiver. Abstracts Journees Jean Chevaugeon, 4iemes Rencontres de Phytopathologie/Mycologie, Aussois, 13-17 March 2002 .

Simulation of vertical spread of plant diseases in a crop canopy by stem extension and splash dispersal

A - Papers appearing in refereed journals

Pielaat, A., Van Den Bosch, F., Fitt, B. D. L. and Jeger, M. J. 2002. Simulation of vertical spread of plant diseases in a crop canopy by stem extension and splash dispersal. Ecological Modelling. 151, pp. 195-212.

Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ), in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors

A - Papers appearing in refereed journals

Papastamati, K., Van Den Bosch, F., Welham, S. J., Fitt, B. D. L., Evans, N. and Steed, J. M. 2002. Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ), in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors. Ecological Modelling. 148, pp. 169-189.

Time lags in metapopulation responses to landscape change

B - Book chapters etc edited externally

Nagelkerke, K. C. J., Verboom, J., Van Den Bosch, F. and Van De Wolfshaar, K. 2002. Time lags in metapopulation responses to landscape change. in: Gutzwiller, K. J. (ed.) Applying landscape ecology in biological conservation Springer, New York. pp. 330-354

Weed population dynamics and crop rotations: exploring effects of event sequence in a structured periodic system

C2 - Non-edited contributions to conferences

Mertens, S. K., Van Den Bosch, F. and Heesterbeek, J. A. P. 2002. Weed population dynamics and crop rotations: exploring effects of event sequence in a structured periodic system. Abstracts 87th Annual Meeting of the Ecological Society of America, Tucson, 4-9 August 2002 . pp. MER-1014-799580

Changes in populations of the eyespot fungi Tapesia yallundae and T. acuformis under different fungicide regimes in successive crops of winter wheat, 1984-2000

A - Papers appearing in refereed journals

Bierman, S. M., Fitt, B. D. L., Van Den Bosch, F., Bateman, G. L., Jenkyn, J. F. and Welham, S. J. 2002. Changes in populations of the eyespot fungi Tapesia yallundae and T. acuformis under different fungicide regimes in successive crops of winter wheat, 1984-2000. Plant Pathology. 51 (2), pp. 191-201. https://doi.org/10.1046/j.1365-3059.2002.00673.x

A population-dynamics approach to assess the threat of plant pathogens as biological weapons against annual crops

A - Papers appearing in refereed journals

Madden, L. V. and Van Den Bosch, F. 2002. A population-dynamics approach to assess the threat of plant pathogens as biological weapons against annual crops. Bioscience. 52, pp. 65-74.

Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ) in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors

C2 - Non-edited contributions to conferences

Papastamati, K., Van Den Bosch, F., Welham, S. J., Fitt, B. D. L., Evans, N. and Steed, J. M. 2001. Modelling the daily progress of light leaf spot epidemics on winter oilseed rape (Brassica napus ) in relation to Pyrenopeziza brassicae inoculum concentrations and weather factors. Abstracts 8th International Workshop on Plant Disease Epidemiology, Ouro Preto, Brazil, 6-11 May 2001 .

Theoretical epidemiology and modeling with practical applications

C2 - Non-edited contributions to conferences

Madden, L. V. and Van Den Bosch, F. 2001. Theoretical epidemiology and modeling with practical applications. Abstracts 8th International Workshop on Plant Disease Epidemiology, Ouro Preto, Brazil, 6-11 May 2001 .

Vegetation pattern formation in semi-arid grazing systems

A - Papers appearing in refereed journals

Hillerislambers, R., Rietkerk, M., Van Den Bosch, F., Prins, H. H. T. and De Kroon, H. 2001. Vegetation pattern formation in semi-arid grazing systems. Ecology. 82 (1), pp. 50-61. https://doi.org/10.1890/0012-9658(2001)082[0050:VPFISA]2.0.CO;2

Mathematical conservation ecology: a one-predator-two-prey system as a case study

A - Papers appearing in refereed journals

Grasman, J., Van Den Bosch, F. and Van Herwaarden, O. A. 2001. Mathematical conservation ecology: a one-predator-two-prey system as a case study. Bulletin Of Mathematical Biology. 63, pp. 259-269.

Aggregation of a soil with different cropping histories following the addition of organic materials

A - Papers appearing in refereed journals

Watts, C. W., Whalley, W. R., Longstaff, D. J., White, Robin P., Brookes, P. C. and Whitmore, A. P. 2001. Aggregation of a soil with different cropping histories following the addition of organic materials. Soil Use and Management. 17 (4), pp. 263-268. https://doi.org/10.1111/j.1475-2743.2001.tb00036.x

Epidemic dynamics and patterns of plant diseases

A - Papers appearing in refereed journals

Segarra, J., Jeger, M. J. and Van Den Bosch, F. 2001. Epidemic dynamics and patterns of plant diseases. Phytopathology. 91 (10), pp. 1001-1010. https://doi.org/10.1094/PHYTO.2001.91.10.1001

Modelling of rain splash trajectories and prediction of rain splash height

A - Papers appearing in refereed journals

Pietravalle, S., Van Den Bosch, F., Welham, S. J., Parker, S. R. and Lovell, D. J. 2001. Modelling of rain splash trajectories and prediction of rain splash height. Agricultural and Forest Meteorology. 109, pp. 171-185. https://doi.org/10.1016/S0168-1923(01)00267-2

Effect of temperature on epidemiological parameters of Puccinia lagenophorae

A - Papers appearing in refereed journals

Kolnaar, R. W. and Van Den Bosch, F. 2001. Effect of temperature on epidemiological parameters of Puccinia lagenophorae. Plant Pathology. 50 (3), pp. 363-370. https://doi.org/10.1046/j.1365-3059.2001.00533.x

Spread of organisms: can travelling and dispersive waves be distinguished?

A - Papers appearing in refereed journals

Frantzen, J. and Van Den Bosch, F. 2000. Spread of organisms: can travelling and dispersive waves be distinguished? Basic and Applied Ecology. 1, pp. 83-91.

A theoretical assessment of the effects of vector-virus transmission mechanism on plant virus epidemics

A - Papers appearing in refereed journals

Madden, L. V., Jeger, M. J. and Van Den Bosch, F. 2000. A theoretical assessment of the effects of vector-virus transmission mechanism on plant virus epidemics. Phytopathology. 90 (6), pp. 576-594. https://doi.org/10.1094/PHYTO.2000.90.6.576

Implementation of results from rain tower experiments into a simulation model for vertical spore distribution

C1 - Edited contributions to conferences/learned societies

Pielaat, A., Van Den Bosch, F., Marshall, D. C. A., Fitt, B. D. L., McCartney, H. A. and Jeger, M. J. 1999. Implementation of results from rain tower experiments into a simulation model for vertical spore distribution. Information Technology for Crop Protection. Aspects of Applied Biology 55 . pp. 15-20

Simulating trends in soil organic carbon in long-term experiments using the Verberne/MOTOR model

A - Papers appearing in refereed journals

Whitmore, A. P., Klein-Gunnewiek, H., Crocker, G. J., Klir, J., Korschens, M. and Poulton, P. R. 1997. Simulating trends in soil organic carbon in long-term experiments using the Verberne/MOTOR model. Geoderma. 81 (1-2), pp. 137-151. https://doi.org/10.1016/S0016-7061(97)00086-4

A comparison of the performance of nine soil organic matter models using datasets from seven long-term experiments

A - Papers appearing in refereed journals

Smith, P., Smith, J. U., Powlson, D. S., Mcgill, W. B., Arah, J. R. M., Chertov, O. G., Coleman, K., Franko, U., Frolking, S., Jenkinson, D. S., Jensen, L. S., Kelly, R. H., Klein-Gunnewiek, H., Komarov, A. S., Li, C., Molina, J. A. E., Mueller, T., Parton, W. J., Thornley, J. H. M. and Whitmore, A. P. 1997. A comparison of the performance of nine soil organic matter models using datasets from seven long-term experiments. Geoderma. 81 (1-2), pp. 153-225. https://doi.org/10.1016/S0016-7061(97)00087-6

Modelling the fate of nitrogen in crop and soil in the years following application of 15N-labelled fertilizer to winter wheat

A - Papers appearing in refereed journals

Bradbury, N. J., Whitmore, A. P., Hart, P. B. S. and Jenkinson, D. S. 1993. Modelling the fate of nitrogen in crop and soil in the years following application of 15N-labelled fertilizer to winter wheat. The Journal of Agricultural Science. 121, pp. 363-379.

Potential contribution of ploughed grassland to nitrate leaching

A - Papers appearing in refereed journals

Whitmore, A. P., Bradbury, N. J. and Johnson, P. A. 1992. Potential contribution of ploughed grassland to nitrate leaching. Agriculture, Ecosystems & Environment. 39 (3-4), pp. 221-233. https://doi.org/10.1016/0167-8809(92)90056-H

Farming, fertilizers and the nitrate problem

E - Books edited/written by staff member, alone/with others

Addiscott, T. M., Whitmore, A. P. and Powlson, D. S. 1991. Farming, fertilizers and the nitrate problem. CABI International, Wallingford, Oxon (CABI).

A model for calculating the nitrogen requirement of cereals

C2 - Non-edited contributions to conferences

Bradbury, N. J., Whitmore, A. P. and Jenkinson, D. S. 1991. A model for calculating the nitrogen requirement of cereals. Proceedings, 1st Congress of the European Society of Agronomy, Paris, 5-7 December, 1990. pp. Session 2 O 03

Simulation of solute leaching in soils of differing permeabilities

A - Papers appearing in refereed journals

Addiscott, T. M. and Whitmore, A. P. 1991. Simulation of solute leaching in soils of differing permeabilities. Soil Use and Management. 7 (2), pp. 94-102. https://doi.org/10.1111/j.1475-2743.1991.tb00856.x

A method for assessing the goodness of computer simulation of soil processes

A - Papers appearing in refereed journals

Whitmore, A. P. 1991. A method for assessing the goodness of computer simulation of soil processes. Journal of Soil Science. 42 (2), pp. 289-299. https://doi.org/10.1111/j.1365-2389.1991.tb00410.x

The Rothamsted soil and crop nitrogen service on Viewdata 1985-1989

A - Papers appearing in refereed journals

Whitmore, A. P., Bland, G. J. and Addiscott, T. M. 1991. The Rothamsted soil and crop nitrogen service on Viewdata 1985-1989. Soil Use and Management. 7 (1), pp. 14-21. https://doi.org/10.1111/j.1475-2743.1991.tb00840.x

Simulation of nitrogen in soil and winter wheat crops: modelling nitrogen turnover through organic matter

A - Papers appearing in refereed journals

Whitmore, A. P., Coleman, K., Bradbury, N. J. and Addiscott, T. M. 1991. Simulation of nitrogen in soil and winter wheat crops: modelling nitrogen turnover through organic matter. Fertilizer Research. 27, pp. 283-291. https://doi.org/10.1007/BF01051134

Simulation of nitrogen in soil and winter wheat crops: a management model that makes best use of limited information

A - Papers appearing in refereed journals

Addiscott, T. M., Bailey, N. J., Bland, G. J. and Whitmore, A. P. 1991. Simulation of nitrogen in soil and winter wheat crops: a management model that makes best use of limited information. Fertilizer Research. 27, pp. 305-312. https://doi.org/10.1007/BF01051136

Computer simulation of nitrogen dynamics in soil.

C1 - Edited contributions to conferences/learned societies

Whitmore, A. P. 1989. Computer simulation of nitrogen dynamics in soil. AFRC Meeting on Plant and Soil Nitrogen Metabolism, Lancaster, 1989, 24..

Computer simulation of the behaviour of nitrogen in the soil and cropin the Broadbalk continuous wheat experiment

B - Book chapters etc edited externally

Whitmore, A. P. and Parry, L.C. 1988. Computer simulation of the behaviour of nitrogen in the soil and cropin the Broadbalk continuous wheat experiment. in: Nitrogen efficiency in agricultural soils London Elsevier. pp. 418-432

A simple function for describing the growth and nitrogen uptake of winter cereals.

C1 - Edited contributions to conferences/learned societies

Whitmore, A. P. and Addiscott, T. M. 1988. A simple function for describing the growth and nitrogen uptake of winter cereals. Assessment of nitrogen fertilizer requirement. Proceedings 3rd Meeting NW European Study Group for the Assessment of Nitrogen Fertilizer Requirement, Tune, Denmark, 1988. Ed. N. E. Nielsen.. pp. 137-145

Nitrogen models and soil heterogeneity.

C1 - Edited contributions to conferences/learned societies

Addiscott, T. M. and Whitmore, A. P. 1988. Nitrogen models and soil heterogeneity. Assessment of nitrogen fertilizer requirement. Proceedings 3rd Meeting NW European Study Group for the Assessment of Nitrogen Fertilizer Requirement, Tune, Denmark, 1988. Ed. N. E. Nielsen.. pp. 88-95

A function for describing nitrogen uptake and dry matter production by winter barley crops.

A - Papers appearing in refereed journals

Whitmore, A. P. 1988. A function for describing nitrogen uptake and dry matter production by winter barley crops. Plant and Soil. 111, pp. 53-58. https://doi.org/10.1007/BF02182036

Computer simulation of the behaviour of nitrogen in soil and crop in the Broadbalk continuous wheat experiment

B - Book chapters etc edited externally

Whitmore, A. P. and Parry, L. C. 1988. Computer simulation of the behaviour of nitrogen in soil and crop in the Broadbalk continuous wheat experiment. in: Jenkinson, D. and Smith, K. A. (ed.) Nitrogen efficiency in agricultural soils London Elsevier. pp. 418-432

Nitrogen advice for cereals: present realities and future possibilities

A - Papers appearing in refereed journals

Sylvester-Bradley, R., Addiscott, T. M., Vaidyanathan, L. V., Murray, A. W. A. and Whitmore, A. P. 1987. Nitrogen advice for cereals: present realities and future possibilities. Proceedings of the Fertiliser Society. 263, pp. 1-36.

Applications of computer modelling to predict mineral nitrogen in soil and nitrogen in crops.

A - Papers appearing in refereed journals

Whitmore, A. P. and Addiscott, T. M. 1987. Applications of computer modelling to predict mineral nitrogen in soil and nitrogen in crops. Soil Use and Management. 3 (1), pp. 38-43. https://doi.org/10.1111/j.1475-2743.1987.tb00707.x

Evaluation of a nitrogen leaching/mineralization model for sugar beet.

A - Papers appearing in refereed journals

Whitmore, A. P., Milford, G. F. J. and Armstrong, M. J. 1987. Evaluation of a nitrogen leaching/mineralization model for sugar beet. Plant and Soil. 101 (1), pp. 61-65. https://doi.org/10.1007/BF02371031

A function for describing nitrogen uptake, dry matter production and rooting by wheat crops.

A - Papers appearing in refereed journals

Whitmore, A. P. and Addiscott, T. M. 1987. A function for describing nitrogen uptake, dry matter production and rooting by wheat crops. Plant and Soil. 101 (1), pp. 51-60. https://doi.org/10.1007/BF02371030

Computer simulation of changes in soil mineral nitrogen and crop nitrogen during autumn, winter and spring.

A - Papers appearing in refereed journals

Addiscott, T. M. and Whitmore, A. P. 1987. Computer simulation of changes in soil mineral nitrogen and crop nitrogen during autumn, winter and spring. The Journal of Agricultural Science. 109 (1), pp. 141-157. https://doi.org/10.1017/S0021859600081089

Application of simple leaching models in heterogeneous soils.

A - Papers appearing in refereed journals

Addiscott, T. M., Heys, P. J. and Whitmore, A. P. 1986. Application of simple leaching models in heterogeneous soils. Geoderma. 38 (1-4), pp. 185-194. https://doi.org/10.1016/0016-7061(86)90014-5

Putting nitrogen predictions on the screen. The soil and crop nitrogen viewdata service from Rothamsted and ADAS.

G - Articles in popular magazines and other technical publications

Addiscott, T. M. and Whitmore, A. P. 1986. Putting nitrogen predictions on the screen. The soil and crop nitrogen viewdata service from Rothamsted and ADAS. Soil and Water. 14, pp. 17-19.

Computer simulation of winter leaching losses of nitrate from soils cropped with winter wheat.

A - Papers appearing in refereed journals

Whitmore, A. P. and Addiscott, T. M. 1986. Computer simulation of winter leaching losses of nitrate from soils cropped with winter wheat. Soil Use and Management. 2 (1), pp. 26-30. https://doi.org/10.1111/j.1475-2743.1986.tb00674.x

Looking to the future

G - Articles in popular magazines and other technical publications

Addiscott, T. M. and Whitmore, A. P. 1986. Looking to the future. Fertiliser Review.

Spatial variation of soil-nitrogen and related factors

A - Papers appearing in refereed journals

Whitmore, A. P., Addiscott, T. M., Webster, R. and Thomas, V. H. 1983. Spatial variation of soil-nitrogen and related factors. Journal of the Science of Food and Agriculture - jsfa. 34 (3), pp. 268-269. https://doi.org/10.1002/jsfa.2740340310